Wall clock time and date at job start Tue Mar 31 2020 11:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00174 * 2 1 4 4 H 1.48494 * 109.47574 * 270.00280 * 3 2 1 5 5 H 1.48507 * 109.47061 * 29.99911 * 3 2 1 6 6 H 1.48502 * 109.47195 * 149.99792 * 3 2 1 7 7 C 1.37880 * 119.99740 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99795 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00166 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.53262 * 60.10298 * 9 7 2 11 11 C 1.53118 * 109.50641 * 300.00639 * 9 7 2 12 12 C 1.53113 * 109.16270 * 182.40509 * 11 9 7 13 13 C 1.53039 * 109.28101 * 57.65036 * 12 11 9 14 14 N 1.46846 * 109.52097 * 300.82237 * 13 12 11 15 15 C 1.38530 * 110.99669 * 185.83432 * 14 13 12 16 16 C 1.39692 * 120.48598 * 56.04878 * 15 14 13 17 17 C 1.38083 * 118.48990 * 180.02562 * 16 15 14 18 18 N 1.32509 * 119.29450 * 0.02562 * 17 16 15 19 19 C 1.32474 * 120.93465 * 359.97438 * 18 17 16 20 20 N 1.38397 * 119.17810 * 179.72294 * 19 18 17 21 21 C 1.46844 * 110.99638 * 124.21150 * 20 19 18 22 22 C 1.53046 * 109.52034 * 174.16095 * 21 20 19 23 23 C 1.53111 * 109.27728 * 59.17841 * 22 21 20 24 24 C 1.53127 * 109.16333 * 302.34526 * 23 22 21 25 25 C 1.46846 * 110.99779 * 0.02562 * 20 19 18 26 26 N 1.32474 * 121.64293 * 0.02562 * 19 18 17 27 27 C 1.46851 * 111.19683 * 61.74378 * 14 13 12 28 28 H 0.97001 * 119.99736 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.52418 * 62.49489 * 11 9 7 30 30 H 1.08997 * 109.52336 * 302.30746 * 11 9 7 31 31 H 1.09002 * 109.50176 * 297.71253 * 12 11 9 32 32 H 1.09001 * 109.50590 * 177.59400 * 12 11 9 33 33 H 1.08996 * 109.46095 * 180.80382 * 13 12 11 34 34 H 1.08996 * 109.44759 * 60.83306 * 13 12 11 35 35 H 1.08003 * 120.74772 * 0.02562 * 16 15 14 36 36 H 1.08002 * 120.34800 * 180.02562 * 17 16 15 37 37 H 1.09000 * 109.46405 * 294.17082 * 21 20 19 38 38 H 1.09001 * 109.46405 * 54.14626 * 21 20 19 39 39 H 1.09000 * 109.50171 * 299.23773 * 22 21 20 40 40 H 1.09003 * 109.53484 * 179.13734 * 22 21 20 41 41 H 1.09002 * 109.52496 * 182.43967 * 23 22 21 42 42 H 1.09004 * 109.52816 * 62.25052 * 23 22 21 43 43 H 1.08996 * 109.50048 * 297.71630 * 24 23 22 44 44 H 1.08994 * 109.53532 * 177.61701 * 24 23 22 45 45 H 1.08999 * 109.45933 * 305.85001 * 25 20 19 46 46 H 1.08994 * 109.46598 * 65.83840 * 25 20 19 47 47 H 1.08998 * 109.46080 * 58.26870 * 27 14 13 48 48 H 1.08996 * 109.45761 * 178.23892 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6250 -2.5586 -0.8909 11 6 0.3708 -2.5813 1.2496 12 6 -0.3449 -3.9347 1.2724 13 6 0.6952 -5.0569 1.2399 14 7 1.5110 -4.9348 0.0250 15 6 2.3762 -6.0092 -0.1020 16 6 1.8854 -7.3170 -0.1113 17 6 2.7847 -8.3571 -0.2395 18 7 4.0773 -8.0868 -0.3487 19 6 4.5150 -6.8365 -0.3368 20 7 5.8734 -6.5961 -0.4474 21 6 6.1591 -5.7006 -1.5755 22 6 7.6468 -5.3415 -1.5794 23 6 8.4759 -6.6232 -1.6984 24 6 8.1240 -7.5589 -0.5384 25 6 6.6224 -7.8537 -0.5654 26 7 3.6854 -5.8109 -0.2157 27 6 2.2448 -3.6629 0.0039 28 1 -0.4850 0.8401 0.0004 29 1 -0.3671 -1.7794 1.2290 30 1 0.9921 -2.4829 2.1397 31 1 -0.9960 -4.0167 0.4021 32 1 -0.9401 -4.0165 2.1819 33 1 0.1884 -6.0219 1.2415 34 1 1.3371 -4.9823 2.1175 35 1 0.8267 -7.5102 -0.0203 36 1 2.4380 -9.3799 -0.2507 37 1 5.9038 -6.2005 -2.5099 38 1 5.5663 -4.7912 -1.4765 39 1 7.8999 -4.8292 -0.6512 40 1 7.8621 -4.6890 -2.4256 41 1 9.5367 -6.3760 -1.6579 42 1 8.2516 -7.1158 -2.6445 43 1 8.3846 -7.0815 0.4061 44 1 8.6797 -8.4910 -0.6406 45 1 6.3662 -8.5084 0.2675 46 1 6.3651 -8.3430 -1.5047 47 1 2.8795 -3.5952 0.8874 48 1 2.8635 -3.6156 -0.8922 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596328107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:23 Heat of formation + Delta-G solvation = 47.025155 kcal Electronic energy + Delta-G solvation = -27184.307950 eV Core-core repulsion = 23659.438807 eV Total energy + Delta-G solvation = -3524.869143 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.40060 -40.46357 -39.21953 -36.13691 -34.87480 -34.47007 -32.80475 -32.02041 -31.76838 -30.76687 -27.14473 -26.21241 -26.05444 -24.38136 -23.88356 -23.10913 -22.55524 -20.78260 -20.54027 -19.19130 -18.48104 -18.17245 -17.24697 -16.57560 -16.52405 -16.18330 -15.80613 -15.71450 -15.43642 -15.30103 -14.94383 -14.80710 -14.43496 -14.34605 -14.27945 -14.22727 -14.07315 -13.49358 -13.21465 -12.89426 -12.75134 -12.57591 -12.27700 -12.07441 -11.96072 -11.86629 -11.81728 -11.70472 -11.49270 -11.45734 -11.41215 -11.22907 -11.03870 -10.73194 -10.41738 -10.18683 -9.74095 -9.20181 -8.11514 -6.24935 0.01567 0.22181 1.39775 1.40393 1.50893 2.11495 2.37378 2.49201 2.89816 3.15854 3.28295 3.64093 3.83962 3.88351 3.89447 3.98770 4.09100 4.11298 4.21335 4.28453 4.29414 4.37180 4.51061 4.55927 4.57413 4.58942 4.61704 4.77110 4.78755 4.86031 4.90196 4.92272 4.98854 5.02934 5.06931 5.16537 5.17263 5.23636 5.28352 5.40794 5.45290 5.58858 5.60606 5.70898 5.85513 5.97756 6.09789 6.17877 6.31163 6.39982 6.84096 7.24702 7.42603 8.93463 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.012850 B = 0.003976 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.407662 B = 7039.856368 C = 8991.436442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.020 3.980 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.045 0.955 9 C 0.052 3.948 10 H 0.000 1.000 11 C -0.108 4.108 12 C -0.110 4.110 13 C 0.072 3.928 14 N -0.478 5.478 15 C 0.362 3.638 16 C -0.272 4.272 17 C 0.186 3.814 18 N -0.583 5.583 19 C 0.498 3.502 20 N -0.472 5.472 21 C 0.071 3.929 22 C -0.114 4.114 23 C -0.118 4.118 24 C -0.115 4.115 25 C 0.076 3.924 26 N -0.597 5.597 27 C 0.105 3.895 28 H 0.262 0.738 29 H 0.066 0.934 30 H 0.023 0.977 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.035 0.965 35 H 0.173 0.827 36 H 0.212 0.788 37 H 0.040 0.960 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.096 0.904 45 H 0.081 0.919 46 H 0.048 0.952 47 H 0.021 0.979 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.625 -19.044 -0.595 21.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.180 4.180 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.063 0.937 9 C 0.033 3.967 10 H 0.019 0.981 11 C -0.146 4.146 12 C -0.147 4.147 13 C -0.053 4.053 14 N -0.194 5.194 15 C 0.121 3.879 16 C -0.298 4.298 17 C 0.022 3.978 18 N -0.306 5.306 19 C 0.140 3.860 20 N -0.192 5.192 21 C -0.055 4.055 22 C -0.152 4.152 23 C -0.156 4.156 24 C -0.153 4.153 25 C -0.050 4.050 26 N -0.322 5.322 27 C -0.021 4.021 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.131 0.869 34 H 0.053 0.947 35 H 0.190 0.810 36 H 0.229 0.771 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.115 0.885 45 H 0.099 0.901 46 H 0.066 0.934 47 H 0.039 0.961 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.284 -18.434 -0.639 21.118 hybrid contribution -0.501 1.100 -0.043 1.209 sum 9.783 -17.334 -0.682 19.916 Atomic orbital electron populations 1.70003 1.06955 1.27218 1.50896 1.25642 0.95698 1.02066 0.94554 0.85641 0.78725 0.79529 0.78284 1.20114 1.20406 1.19676 1.21402 0.92765 0.92107 1.51329 0.93665 1.18658 0.92780 0.90939 0.94312 0.98146 1.21514 0.99223 0.96825 0.97035 1.21640 0.97033 0.93656 1.02415 1.22312 0.94592 1.01525 0.86824 1.58952 1.21357 1.01810 1.37313 1.20429 0.86971 0.91991 0.88516 1.22468 1.04213 0.91141 1.12002 1.23511 0.86373 1.01227 0.86647 1.68431 1.18877 1.20768 1.22565 1.21061 0.90666 0.84500 0.89769 1.58393 1.00849 1.17561 1.42420 1.22124 0.99312 0.95380 0.88725 1.21637 0.91442 0.98966 1.03130 1.21618 1.00505 0.94874 0.98582 1.21692 0.93107 1.01064 0.99456 1.22055 0.93515 0.87475 1.01997 1.67931 1.04003 1.36746 1.23529 1.21747 0.94765 0.86497 0.99124 0.92860 0.91519 0.95783 0.91942 0.89418 0.86871 0.94651 0.80998 0.77114 0.94193 0.91754 0.91561 0.89598 0.89580 0.91454 0.91610 0.88522 0.90091 0.93384 0.96051 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.75 11.35 21.45 0.24 -52.50 16 2 C 0.02 1.11 5.30 84.65 0.45 1.55 16 3 Si 0.95 44.46 29.54 68.60 2.03 46.49 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.54 -30.80 8.56 25.60 0.22 -30.58 16 8 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 9 C 0.05 2.72 2.26 -11.49 -0.03 2.69 16 10 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 11 C -0.11 -5.10 5.02 30.67 0.15 -4.95 16 12 C -0.11 -3.93 6.09 30.64 0.19 -3.75 16 13 C 0.07 2.34 5.25 86.33 0.45 2.79 16 14 N -0.48 -18.33 4.68 -701.47 -3.28 -21.62 16 15 C 0.36 12.71 6.40 133.21 0.85 13.57 16 16 C -0.27 -6.98 9.26 22.58 0.21 -6.77 16 17 C 0.19 4.18 11.28 84.55 0.95 5.14 16 18 N -0.58 -16.44 8.67 -198.27 -1.72 -18.16 16 19 C 0.50 16.50 7.17 261.51 1.87 18.38 16 20 N -0.47 -13.86 4.72 -708.97 -3.34 -17.20 16 21 C 0.07 1.96 5.33 86.33 0.46 2.42 16 22 C -0.11 -2.36 6.09 30.65 0.19 -2.17 16 23 C -0.12 -1.85 6.00 30.67 0.18 -1.66 16 24 C -0.12 -1.90 6.10 30.65 0.19 -1.72 16 25 C 0.08 1.70 4.63 86.33 0.40 2.10 16 26 N -0.60 -22.68 8.07 -195.54 -1.58 -24.26 16 27 C 0.11 4.90 3.89 86.32 0.34 5.23 16 28 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.07 3.54 6.15 -2.39 -0.01 3.53 16 30 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.11 2.74 6.75 -2.39 -0.02 2.72 16 34 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.17 3.33 7.24 -2.91 -0.02 3.30 16 36 H 0.21 2.59 8.06 -2.91 -0.02 2.57 16 37 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 2.19 7.55 -2.39 -0.02 2.17 16 39 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.08 1.88 7.68 -2.39 -0.02 1.86 16 46 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 47 H 0.02 1.05 8.12 -2.39 -0.02 1.03 16 48 H 0.05 2.49 7.73 -2.39 -0.02 2.47 16 Total: -1.00 -68.46 368.12 0.35 -68.10 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.93 Total: 16.87 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 7.08 Total: 2.27 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -9.68 Total: -133.74 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -68.46 0.35 -68.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596328107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.126 kcal (2) G-P(sol) polarization free energy of solvation -68.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds