Wall clock time and date at job start Tue Mar 31 2020 11:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99921 * 2 1 4 4 H 1.48496 * 109.47187 * 240.00618 * 3 2 1 5 5 H 1.48501 * 109.46984 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.47038 * 120.00139 * 3 2 1 7 7 C 1.37874 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99799 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00333 * 359.97438 * 7 2 1 10 10 H 1.08991 * 109.50288 * 300.08596 * 9 7 2 11 11 C 1.53116 * 109.53029 * 60.18517 * 9 7 2 12 12 C 1.53114 * 109.16035 * 177.61597 * 11 9 7 13 13 C 1.53044 * 109.27777 * 302.34421 * 12 11 9 14 14 N 1.46838 * 109.52322 * 59.17841 * 13 12 11 15 15 C 1.38529 * 111.00058 * 174.16300 * 14 13 12 16 16 C 1.39683 * 120.48354 * 304.18738 * 15 14 13 17 17 C 1.38087 * 118.48649 * 180.02562 * 16 15 14 18 18 N 1.32512 * 119.29366 * 359.97438 * 17 16 15 19 19 C 1.32465 * 120.93686 * 0.02562 * 18 17 16 20 20 N 1.38397 * 119.18445 * 179.97438 * 19 18 17 21 21 C 1.46843 * 111.00433 * 124.23066 * 20 19 18 22 22 C 1.53036 * 109.52654 * 174.16485 * 21 20 19 23 23 C 1.53124 * 109.27685 * 59.17745 * 22 21 20 24 24 C 1.53120 * 109.16084 * 302.34622 * 23 22 21 25 25 C 1.46853 * 110.99479 * 0.02562 * 20 19 18 26 26 N 1.32474 * 121.64356 * 359.97438 * 19 18 17 27 27 C 1.46847 * 111.19956 * 298.25957 * 14 13 12 28 28 H 0.96996 * 120.00129 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.52521 * 297.51813 * 11 9 7 30 30 H 1.09006 * 109.52733 * 57.64255 * 11 9 7 31 31 H 1.09000 * 109.50767 * 62.28247 * 12 11 9 32 32 H 1.08997 * 109.50710 * 182.40365 * 12 11 9 33 33 H 1.09001 * 109.45763 * 299.16303 * 13 12 11 34 34 H 1.08998 * 109.46312 * 179.19684 * 13 12 11 35 35 H 1.07997 * 120.75594 * 359.97438 * 16 15 14 36 36 H 1.07997 * 120.35277 * 180.02562 * 17 16 15 37 37 H 1.09010 * 109.46108 * 294.18193 * 21 20 19 38 38 H 1.08996 * 109.46430 * 54.14450 * 21 20 19 39 39 H 1.08995 * 109.50109 * 299.23913 * 22 21 20 40 40 H 1.08998 * 109.50495 * 179.11641 * 22 21 20 41 41 H 1.09001 * 109.52096 * 182.44479 * 23 22 21 42 42 H 1.08994 * 109.52414 * 62.25012 * 23 22 21 43 43 H 1.09000 * 109.50251 * 297.71665 * 24 23 22 44 44 H 1.09004 * 109.53462 * 177.61671 * 24 23 22 45 45 H 1.08998 * 109.46159 * 305.85649 * 25 20 19 46 46 H 1.08998 * 109.46057 * 65.82295 * 25 20 19 47 47 H 1.08998 * 109.46668 * 181.75746 * 27 14 13 48 48 H 1.08999 * 109.46186 * 301.72852 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6235 -2.5570 0.8887 11 6 0.3733 -2.5835 -1.2523 12 6 -0.3423 -3.9370 -1.2740 13 6 0.6977 -5.0591 -1.2376 14 7 1.5113 -4.9348 -0.0215 15 6 2.3763 -6.0090 0.1090 16 6 1.8860 -7.3169 0.1148 17 6 2.7849 -8.3567 0.2479 18 7 4.0768 -8.0859 0.3648 19 6 4.5140 -6.8355 0.3561 20 7 5.8710 -6.5942 0.4812 21 6 6.3686 -5.7909 -0.6428 22 6 7.8336 -5.4217 -0.3986 23 6 8.6607 -6.7025 -0.2567 24 6 8.0919 -7.5437 0.8894 25 6 6.6195 -7.8513 0.6077 26 7 3.6847 -5.8101 0.2306 27 6 2.2450 -3.6629 -0.0011 28 1 -0.4850 0.8400 0.0004 29 1 -0.3647 -1.7815 -1.2344 30 1 0.9962 -2.4854 -2.1414 31 1 -0.9951 -4.0175 -0.4048 32 1 -0.9358 -4.0203 -2.1844 33 1 1.3414 -4.9862 -2.1142 34 1 0.1910 -6.0241 -1.2385 35 1 0.8279 -7.5106 0.0183 36 1 2.4388 -9.3797 0.2557 37 1 6.2880 -6.3670 -1.5647 38 1 5.7746 -4.8812 -0.7301 39 1 7.9132 -4.8339 0.5158 40 1 8.2071 -4.8388 -1.2405 41 1 9.6973 -6.4445 -0.0395 42 1 8.6128 -7.2718 -1.1849 43 1 8.1756 -6.9892 1.8241 44 1 8.6500 -8.4767 0.9685 45 1 6.2076 -8.4382 1.4287 46 1 6.5377 -8.4176 -0.3200 47 1 2.8620 -3.6139 0.8961 48 1 2.8814 -3.5966 -0.8835 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596328108.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:27 Heat of formation + Delta-G solvation = 62.226209 kcal Electronic energy + Delta-G solvation = -27203.469846 eV Core-core repulsion = 23679.259870 eV Total energy + Delta-G solvation = -3524.209976 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.19749 -39.22311 -37.94712 -34.53926 -33.84660 -32.82759 -31.35213 -30.92472 -30.24585 -29.43236 -25.43248 -24.87859 -24.74883 -23.22734 -22.65750 -21.71741 -21.15456 -19.85748 -18.84655 -17.87672 -17.17796 -16.41533 -15.85001 -15.40400 -15.08601 -14.81693 -14.59173 -14.49210 -14.09337 -14.00267 -13.89032 -13.48467 -13.35036 -13.18768 -12.88767 -12.56279 -12.43217 -12.28563 -11.90925 -11.39101 -11.06032 -10.96307 -10.91620 -10.75013 -10.70304 -10.67808 -10.60604 -10.48565 -10.22639 -10.11849 -9.91525 -9.53732 -9.19648 -9.02954 -8.73668 -8.49613 -8.31275 -7.91051 -5.99811 -4.05486 1.20852 1.39299 3.14642 3.32898 3.37182 3.40305 3.90647 3.98331 4.35524 4.46262 4.61764 4.73764 4.74697 4.92306 5.06224 5.12795 5.21723 5.30534 5.34846 5.42235 5.46252 5.49013 5.54215 5.59543 5.63840 5.73679 5.80642 5.81615 5.86681 5.96739 5.98221 6.05412 6.19153 6.27527 6.35704 6.44797 6.51189 6.64221 6.68565 6.81159 6.89801 7.05479 7.23028 7.31929 7.54818 7.62316 7.73314 8.00031 8.10269 8.40356 8.47226 8.97643 9.58981 11.06661 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.012967 B = 0.003949 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.808003 B = 7088.640462 C = 8912.459925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.051 3.949 10 H 0.034 0.966 11 C -0.114 4.114 12 C -0.119 4.119 13 C 0.070 3.930 14 N -0.470 5.470 15 C 0.391 3.609 16 C -0.282 4.282 17 C 0.179 3.821 18 N -0.585 5.585 19 C 0.514 3.486 20 N -0.459 5.459 21 C 0.068 3.932 22 C -0.118 4.118 23 C -0.123 4.123 24 C -0.121 4.121 25 C 0.073 3.927 26 N -0.561 5.561 27 C 0.078 3.922 28 H 0.260 0.740 29 H 0.095 0.905 30 H 0.033 0.967 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.143 0.857 36 H 0.163 0.837 37 H 0.039 0.961 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.048 0.952 47 H 0.074 0.926 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.359 -16.697 -2.749 19.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.032 3.968 10 H 0.052 0.948 11 C -0.152 4.152 12 C -0.157 4.157 13 C -0.055 4.055 14 N -0.185 5.185 15 C 0.148 3.852 16 C -0.309 4.309 17 C 0.015 3.985 18 N -0.308 5.308 19 C 0.156 3.844 20 N -0.179 5.179 21 C -0.059 4.059 22 C -0.156 4.156 23 C -0.161 4.161 24 C -0.159 4.159 25 C -0.054 4.054 26 N -0.286 5.286 27 C -0.047 4.047 28 H 0.070 0.930 29 H 0.113 0.887 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.161 0.839 36 H 0.180 0.820 37 H 0.058 0.942 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.105 0.895 46 H 0.067 0.933 47 H 0.093 0.907 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.919 -16.026 -1.865 18.939 hybrid contribution -0.226 0.363 -1.009 1.095 sum 9.693 -15.664 -2.874 18.643 Atomic orbital electron populations 1.69869 1.05854 1.26528 1.50616 1.24917 0.94834 0.98974 0.95016 0.86659 0.79602 0.83108 0.78650 1.20322 1.21326 1.20237 1.21048 0.92928 0.90313 1.50835 0.92636 1.18761 0.92606 0.90564 0.94844 0.94759 1.21721 1.00228 0.94576 0.98708 1.21748 0.96881 0.96067 1.01034 1.22228 0.95319 1.00267 0.87723 1.58891 1.21055 1.02896 1.35656 1.20203 0.87039 0.91094 0.86880 1.22176 1.02477 0.92881 1.13363 1.22681 0.87464 0.99399 0.88939 1.68304 1.17755 1.21609 1.23136 1.20760 0.90906 0.84160 0.88609 1.58338 0.98295 1.19654 1.41592 1.22176 0.96722 0.98032 0.88932 1.21636 0.93211 0.97718 1.03029 1.21628 0.99310 0.96539 0.98637 1.21684 0.94511 1.00259 0.99418 1.21981 0.92582 0.88511 1.02330 1.68030 1.03067 1.34930 1.22561 1.22342 0.95979 0.85167 1.01218 0.92961 0.88665 0.94769 0.91613 0.92490 0.94122 0.91090 0.83930 0.81984 0.94229 0.88479 0.90538 0.90822 0.91567 0.92190 0.90954 0.91046 0.89514 0.93329 0.90749 0.94299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.02 11.36 55.43 0.63 -24.39 16 2 C 0.06 1.75 5.31 -17.82 -0.09 1.66 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -13.98 8.56 -34.44 -0.29 -14.27 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.05 1.27 2.26 -91.69 -0.21 1.06 16 10 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.11 -2.60 5.03 -26.61 -0.13 -2.73 16 12 C -0.12 -2.17 6.09 -26.65 -0.16 -2.33 16 13 C 0.07 1.17 5.25 -3.84 -0.02 1.15 16 14 N -0.47 -8.92 4.68 -173.07 -0.81 -9.73 16 15 C 0.39 6.92 6.41 -154.84 -0.99 5.93 16 16 C -0.28 -4.01 9.26 -39.10 -0.36 -4.38 16 17 C 0.18 2.31 11.28 -17.31 -0.20 2.11 16 18 N -0.58 -8.76 8.67 -14.02 -0.12 -8.89 16 19 C 0.51 8.51 7.18 -322.88 -2.32 6.19 16 20 N -0.46 -6.67 4.72 -175.44 -0.83 -7.50 16 21 C 0.07 0.89 5.33 -3.84 -0.02 0.87 16 22 C -0.12 -1.23 6.09 -26.65 -0.16 -1.39 16 23 C -0.12 -1.08 6.00 -26.61 -0.16 -1.24 16 24 C -0.12 -1.12 6.09 -26.65 -0.16 -1.28 16 25 C 0.07 0.86 4.63 -3.83 -0.02 0.84 16 26 N -0.56 -10.37 8.06 -13.16 -0.11 -10.48 16 27 C 0.08 1.72 3.89 -3.83 -0.01 1.70 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.10 2.42 6.17 -51.93 -0.32 2.10 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.98 6.74 -51.93 -0.35 0.63 16 35 H 0.14 1.70 7.22 -52.49 -0.38 1.32 16 36 H 0.16 1.44 8.06 -52.49 -0.42 1.01 16 37 H 0.04 0.51 8.14 -51.92 -0.42 0.08 16 38 H 0.10 1.49 7.55 -51.93 -0.39 1.10 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 1.07 7.68 -51.93 -0.40 0.67 16 46 H 0.05 0.57 8.10 -51.93 -0.42 0.15 16 47 H 0.07 1.74 7.72 -51.93 -0.40 1.34 16 48 H 0.04 0.87 8.12 -51.93 -0.42 0.45 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -29.57 368.11 -14.15 -43.71 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -8.12 Total: 1.64 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -5.32 Total: -6.11 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -1.23 Total: -60.98 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.57 -14.15 -43.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596328108.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.941 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds