Wall clock time and date at job start Tue Mar 31 2020 11:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99921 * 2 1 4 4 H 1.48496 * 109.47187 * 240.00618 * 3 2 1 5 5 H 1.48501 * 109.46984 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.47038 * 120.00139 * 3 2 1 7 7 C 1.37874 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99799 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00333 * 359.97438 * 7 2 1 10 10 H 1.08991 * 109.50288 * 300.08596 * 9 7 2 11 11 C 1.53116 * 109.53029 * 60.18517 * 9 7 2 12 12 C 1.53114 * 109.16035 * 177.61597 * 11 9 7 13 13 C 1.53044 * 109.27777 * 302.34421 * 12 11 9 14 14 N 1.46838 * 109.52322 * 59.17841 * 13 12 11 15 15 C 1.38529 * 111.00058 * 174.16300 * 14 13 12 16 16 C 1.39683 * 120.48354 * 304.18738 * 15 14 13 17 17 C 1.38087 * 118.48649 * 180.02562 * 16 15 14 18 18 N 1.32512 * 119.29366 * 359.97438 * 17 16 15 19 19 C 1.32465 * 120.93686 * 0.02562 * 18 17 16 20 20 N 1.38397 * 119.18445 * 179.97438 * 19 18 17 21 21 C 1.46843 * 111.00433 * 124.23066 * 20 19 18 22 22 C 1.53036 * 109.52654 * 174.16485 * 21 20 19 23 23 C 1.53124 * 109.27685 * 59.17745 * 22 21 20 24 24 C 1.53120 * 109.16084 * 302.34622 * 23 22 21 25 25 C 1.46853 * 110.99479 * 0.02562 * 20 19 18 26 26 N 1.32474 * 121.64356 * 359.97438 * 19 18 17 27 27 C 1.46847 * 111.19956 * 298.25957 * 14 13 12 28 28 H 0.96996 * 120.00129 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.52521 * 297.51813 * 11 9 7 30 30 H 1.09006 * 109.52733 * 57.64255 * 11 9 7 31 31 H 1.09000 * 109.50767 * 62.28247 * 12 11 9 32 32 H 1.08997 * 109.50710 * 182.40365 * 12 11 9 33 33 H 1.09001 * 109.45763 * 299.16303 * 13 12 11 34 34 H 1.08998 * 109.46312 * 179.19684 * 13 12 11 35 35 H 1.07997 * 120.75594 * 359.97438 * 16 15 14 36 36 H 1.07997 * 120.35277 * 180.02562 * 17 16 15 37 37 H 1.09010 * 109.46108 * 294.18193 * 21 20 19 38 38 H 1.08996 * 109.46430 * 54.14450 * 21 20 19 39 39 H 1.08995 * 109.50109 * 299.23913 * 22 21 20 40 40 H 1.08998 * 109.50495 * 179.11641 * 22 21 20 41 41 H 1.09001 * 109.52096 * 182.44479 * 23 22 21 42 42 H 1.08994 * 109.52414 * 62.25012 * 23 22 21 43 43 H 1.09000 * 109.50251 * 297.71665 * 24 23 22 44 44 H 1.09004 * 109.53462 * 177.61671 * 24 23 22 45 45 H 1.08998 * 109.46159 * 305.85649 * 25 20 19 46 46 H 1.08998 * 109.46057 * 65.82295 * 25 20 19 47 47 H 1.08998 * 109.46668 * 181.75746 * 27 14 13 48 48 H 1.08999 * 109.46186 * 301.72852 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6235 -2.5570 0.8887 11 6 0.3733 -2.5835 -1.2523 12 6 -0.3423 -3.9370 -1.2740 13 6 0.6977 -5.0591 -1.2376 14 7 1.5113 -4.9348 -0.0215 15 6 2.3763 -6.0090 0.1090 16 6 1.8860 -7.3169 0.1148 17 6 2.7849 -8.3567 0.2479 18 7 4.0768 -8.0859 0.3648 19 6 4.5140 -6.8355 0.3561 20 7 5.8710 -6.5942 0.4812 21 6 6.3686 -5.7909 -0.6428 22 6 7.8336 -5.4217 -0.3986 23 6 8.6607 -6.7025 -0.2567 24 6 8.0919 -7.5437 0.8894 25 6 6.6195 -7.8513 0.6077 26 7 3.6847 -5.8101 0.2306 27 6 2.2450 -3.6629 -0.0011 28 1 -0.4850 0.8400 0.0004 29 1 -0.3647 -1.7815 -1.2344 30 1 0.9962 -2.4854 -2.1414 31 1 -0.9951 -4.0175 -0.4048 32 1 -0.9358 -4.0203 -2.1844 33 1 1.3414 -4.9862 -2.1142 34 1 0.1910 -6.0241 -1.2385 35 1 0.8279 -7.5106 0.0183 36 1 2.4388 -9.3797 0.2557 37 1 6.2880 -6.3670 -1.5647 38 1 5.7746 -4.8812 -0.7301 39 1 7.9132 -4.8339 0.5158 40 1 8.2071 -4.8388 -1.2405 41 1 9.6973 -6.4445 -0.0395 42 1 8.6128 -7.2718 -1.1849 43 1 8.1756 -6.9892 1.8241 44 1 8.6500 -8.4767 0.9685 45 1 6.2076 -8.4382 1.4287 46 1 6.5377 -8.4176 -0.3200 47 1 2.8620 -3.6139 0.8961 48 1 2.8814 -3.5966 -0.8835 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596328108.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:26 Heat of formation + Delta-G solvation = 47.127914 kcal Electronic energy + Delta-G solvation = -27204.124557 eV Core-core repulsion = 23679.259870 eV Total energy + Delta-G solvation = -3524.864687 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.39954 -40.46341 -39.21931 -36.13545 -34.87310 -34.46769 -32.80517 -32.02529 -31.76341 -30.76402 -27.14122 -26.21086 -26.05480 -24.38008 -23.89415 -23.09128 -22.55696 -20.80141 -20.52139 -19.19141 -18.47854 -18.16906 -17.22601 -16.57873 -16.56285 -16.21581 -15.88256 -15.54452 -15.35265 -15.32231 -15.10608 -14.72515 -14.49019 -14.33645 -14.25806 -14.17447 -14.08674 -13.52314 -13.20140 -12.87442 -12.75608 -12.59319 -12.30323 -12.05716 -11.96233 -11.86157 -11.82104 -11.69664 -11.50647 -11.45634 -11.41145 -11.20940 -11.01997 -10.75051 -10.41236 -10.18741 -9.74728 -9.18498 -8.11312 -6.24873 0.02502 0.22676 1.40230 1.41658 1.49348 2.05478 2.39713 2.62837 2.78857 3.16046 3.29381 3.63436 3.83800 3.87654 3.90853 3.98651 4.10332 4.11036 4.21023 4.28419 4.29136 4.37558 4.50577 4.55783 4.57574 4.59158 4.61714 4.76924 4.78299 4.86694 4.89898 4.92340 4.98756 5.02905 5.07188 5.16620 5.17697 5.24029 5.28540 5.40615 5.45361 5.59180 5.60652 5.71110 5.85474 5.98248 6.10112 6.18437 6.31285 6.40017 6.84095 7.25179 7.42649 8.93570 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.012967 B = 0.003949 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.808003 B = 7088.640462 C = 8912.459925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.020 3.980 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.045 0.955 9 C 0.052 3.948 10 H -0.002 1.002 11 C -0.107 4.107 12 C -0.110 4.110 13 C 0.073 3.927 14 N -0.479 5.479 15 C 0.363 3.637 16 C -0.273 4.273 17 C 0.186 3.814 18 N -0.584 5.584 19 C 0.498 3.502 20 N -0.473 5.473 21 C 0.072 3.928 22 C -0.115 4.115 23 C -0.118 4.118 24 C -0.116 4.116 25 C 0.076 3.924 26 N -0.597 5.597 27 C 0.105 3.895 28 H 0.262 0.738 29 H 0.065 0.935 30 H 0.025 0.975 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.037 0.963 34 H 0.113 0.887 35 H 0.172 0.828 36 H 0.212 0.788 37 H 0.041 0.959 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.049 0.951 47 H 0.047 0.953 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.032 -19.188 -3.476 21.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.180 4.180 3 Si 0.778 3.222 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.064 0.936 9 C 0.033 3.967 10 H 0.017 0.983 11 C -0.145 4.145 12 C -0.148 4.148 13 C -0.052 4.052 14 N -0.195 5.195 15 C 0.121 3.879 16 C -0.299 4.299 17 C 0.023 3.977 18 N -0.307 5.307 19 C 0.140 3.860 20 N -0.193 5.193 21 C -0.054 4.054 22 C -0.152 4.152 23 C -0.155 4.155 24 C -0.154 4.154 25 C -0.050 4.050 26 N -0.322 5.322 27 C -0.021 4.021 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.056 0.944 34 H 0.131 0.869 35 H 0.190 0.810 36 H 0.229 0.771 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.115 0.885 45 H 0.098 0.902 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 10.605 -18.538 -2.593 21.514 hybrid contribution -0.421 1.060 -0.749 1.365 sum 10.184 -17.478 -3.342 20.503 Atomic orbital electron populations 1.69996 1.06972 1.27299 1.50835 1.25645 0.95695 1.02076 0.94541 0.85699 0.78521 0.79225 0.78751 1.19607 1.20470 1.20038 1.21376 0.92776 0.92103 1.51433 0.93625 1.18657 0.92798 0.90957 0.94305 0.98340 1.21506 0.99199 0.96784 0.97019 1.21642 0.97061 0.93693 1.02391 1.22314 0.94634 1.01486 0.86787 1.58926 1.21450 1.01830 1.37282 1.20426 0.86944 0.91979 0.88530 1.22461 1.04184 0.91197 1.12081 1.23506 0.86370 1.01239 0.86623 1.68423 1.19011 1.20514 1.22761 1.21057 0.91541 0.84384 0.88989 1.58415 0.97956 1.21111 1.41827 1.22117 0.97920 0.96554 0.88856 1.21642 0.91653 0.98934 1.03004 1.21614 0.99788 0.95312 0.98821 1.21694 0.92983 1.01490 0.99207 1.22052 0.93726 0.87259 1.02000 1.67930 1.04074 1.36558 1.23678 1.21745 0.94766 0.86458 0.99147 0.92853 0.91608 0.95594 0.92081 0.89347 0.94417 0.86902 0.81013 0.77136 0.94028 0.91743 0.91669 0.89515 0.89621 0.91347 0.91725 0.88526 0.90242 0.93233 0.93425 0.95716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.89 11.36 21.45 0.24 -52.65 16 2 C 0.02 1.11 5.31 84.65 0.45 1.56 16 3 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.54 -30.86 8.56 25.60 0.22 -30.65 16 8 H 0.05 2.62 7.74 -2.91 -0.02 2.60 16 9 C 0.05 2.71 2.26 -11.49 -0.03 2.68 16 10 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 11 C -0.11 -5.03 5.03 30.67 0.15 -4.87 16 12 C -0.11 -3.92 6.09 30.65 0.19 -3.73 16 13 C 0.07 2.31 5.25 86.33 0.45 2.77 16 14 N -0.48 -18.35 4.68 -701.47 -3.28 -21.63 16 15 C 0.36 12.72 6.41 133.21 0.85 13.57 16 16 C -0.27 -7.01 9.26 22.58 0.21 -6.80 16 17 C 0.19 4.19 11.28 84.55 0.95 5.15 16 18 N -0.58 -16.47 8.67 -198.28 -1.72 -18.19 16 19 C 0.50 16.51 7.18 261.51 1.88 18.39 16 20 N -0.47 -13.88 4.72 -708.97 -3.34 -17.22 16 21 C 0.07 1.94 5.33 86.33 0.46 2.40 16 22 C -0.11 -2.33 6.09 30.65 0.19 -2.15 16 23 C -0.12 -1.81 6.00 30.68 0.18 -1.63 16 24 C -0.12 -1.92 6.09 30.65 0.19 -1.73 16 25 C 0.08 1.70 4.63 86.32 0.40 2.10 16 26 N -0.60 -22.68 8.06 -195.56 -1.58 -24.25 16 27 C 0.11 4.90 3.89 86.33 0.34 5.24 16 28 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 29 H 0.07 3.48 6.17 -2.39 -0.01 3.46 16 30 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.11 2.69 6.74 -2.39 -0.02 2.67 16 35 H 0.17 3.33 7.22 -2.91 -0.02 3.31 16 36 H 0.21 2.60 8.06 -2.91 -0.02 2.58 16 37 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.06 2.14 7.55 -2.39 -0.02 2.12 16 39 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 45 H 0.08 1.87 7.68 -2.39 -0.02 1.85 16 46 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 47 H 0.05 2.41 7.72 -2.39 -0.02 2.39 16 48 H 0.02 1.18 8.12 -2.39 -0.02 1.16 16 Total: -1.00 -68.72 368.11 0.36 -68.36 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.93 Total: 16.79 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 7.08 Total: 2.30 kcal Atomic # 7 Polarization: -124.26 SS G_CDS: -9.67 Total: -133.94 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -68.72 0.36 -68.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596328108.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.484 kcal (2) G-P(sol) polarization free energy of solvation -68.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds