Wall clock time and date at job start Tue Mar 31 2020 10:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00085 * 2 1 4 4 H 1.48497 * 109.47255 * 240.00194 * 3 2 1 5 5 H 1.48500 * 109.47130 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47287 * 119.99873 * 3 2 1 7 7 C 1.37873 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00046 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00277 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.50469 * 59.99702 * 9 7 2 11 11 C 1.53119 * 109.50255 * 299.91902 * 9 7 2 12 12 C 1.53115 * 109.16284 * 182.36459 * 11 9 7 13 13 C 1.53040 * 109.27691 * 57.65464 * 12 11 9 14 14 N 1.46843 * 109.52392 * 300.82256 * 13 12 11 15 15 C 1.46900 * 111.00190 * 185.84009 * 14 13 12 16 16 C 1.50704 * 109.47010 * 66.04310 * 15 14 13 17 17 C 1.38603 * 120.72014 * 269.72350 * 16 15 14 18 18 N 1.32283 * 119.19413 * 179.78832 * 17 16 15 19 19 C 1.32495 * 120.73794 * 0.47352 * 18 17 16 20 20 N 1.38404 * 119.21209 * 179.75155 * 19 18 17 21 21 C 1.48533 * 111.00489 * 242.62619 * 20 19 18 22 22 C 1.54932 * 103.22867 * 159.72410 * 21 20 19 23 23 C 1.54598 * 102.92393 * 322.58549 * 22 21 20 24 24 C 1.47905 * 111.00406 * 0.02562 * 20 19 18 25 25 N 1.32489 * 121.56802 * 359.77553 * 19 18 17 26 26 C 1.32274 * 120.74282 * 359.97438 * 25 19 18 27 27 C 1.46846 * 111.20060 * 61.74295 * 14 13 12 28 28 H 0.97001 * 120.00053 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.52152 * 302.27232 * 11 9 7 30 30 H 1.08999 * 109.52204 * 62.39287 * 11 9 7 31 31 H 1.09001 * 109.50414 * 177.59756 * 12 11 9 32 32 H 1.08999 * 109.50578 * 297.71448 * 12 11 9 33 33 H 1.08997 * 109.46185 * 60.83867 * 13 12 11 34 34 H 1.08996 * 109.46026 * 180.80323 * 13 12 11 35 35 H 1.08995 * 109.47103 * 186.04094 * 15 14 13 36 36 H 1.08998 * 109.46780 * 306.04650 * 15 14 13 37 37 H 1.08003 * 120.40406 * 359.97438 * 17 16 15 38 38 H 1.09004 * 110.66517 * 278.16452 * 21 20 19 39 39 H 1.08998 * 110.66340 * 41.28637 * 21 20 19 40 40 H 1.09005 * 110.72255 * 204.23088 * 22 21 20 41 41 H 1.08997 * 110.88009 * 81.02297 * 22 21 20 42 42 H 1.09004 * 110.30951 * 263.04191 * 23 22 21 43 43 H 1.08994 * 110.39090 * 140.91581 * 23 22 21 44 44 H 1.09000 * 109.91213 * 333.50621 * 24 20 19 45 45 H 1.09006 * 109.91754 * 94.60056 * 24 20 19 46 46 H 1.07989 * 120.40426 * 180.02562 * 26 25 19 47 47 H 1.08996 * 109.46322 * 178.24672 * 27 14 13 48 48 H 1.08991 * 109.46240 * 58.27106 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6244 -2.5569 -0.8918 11 6 0.3715 -2.5827 1.2489 12 6 -0.3449 -3.9358 1.2700 13 6 0.6945 -5.0585 1.2351 14 7 1.5098 -4.9349 0.0201 15 6 2.4265 -6.0746 -0.1170 16 6 1.6314 -7.3342 -0.3452 17 6 1.2127 -8.1108 0.7238 18 7 0.5127 -9.2084 0.4890 19 6 0.2196 -9.5723 -0.7509 20 7 -0.5102 -10.7295 -0.9605 21 6 0.2805 -11.7261 -1.7272 22 6 -0.4343 -13.0640 -1.4121 23 6 -0.8305 -12.9029 0.0735 24 6 -0.8474 -11.3833 0.3226 25 7 0.6090 -8.8552 -1.7946 26 6 1.3077 -7.7443 -1.6291 27 6 2.2442 -3.6635 0.0004 28 1 -0.4850 0.8400 0.0004 29 1 0.9935 -2.4860 2.1388 30 1 -0.3652 -1.7796 1.2304 31 1 -0.9397 -4.0185 2.1797 32 1 -0.9966 -4.0161 0.3999 33 1 1.3371 -4.9858 2.1126 34 1 0.1872 -6.0232 1.2356 35 1 3.0914 -5.9061 -0.9640 36 1 3.0168 -6.1775 0.7936 37 1 1.4525 -7.8216 1.7364 38 1 0.2399 -11.5103 -2.7949 39 1 1.3126 -11.7496 -1.3774 40 1 0.2472 -13.9050 -1.5404 41 1 -1.3193 -13.1881 -2.0361 42 1 -0.0928 -13.3834 0.7162 43 1 -1.8190 -13.3263 0.2510 44 1 -0.1063 -11.1226 1.0782 45 1 -1.8383 -11.0688 0.6505 46 1 1.6218 -7.1638 -2.4837 47 1 2.8624 -3.6150 -0.8960 48 1 2.8795 -3.5973 0.8836 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597175067.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:37 Heat of formation + Delta-G solvation = 65.447896 kcal Electronic energy + Delta-G solvation = -26385.159839 eV Core-core repulsion = 22861.089566 eV Total energy + Delta-G solvation = -3524.070273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.40394 -39.05283 -38.07343 -34.52430 -33.79333 -32.96751 -31.82134 -30.22730 -29.58850 -29.26126 -25.91421 -25.10722 -24.57397 -23.31434 -21.92487 -21.52761 -21.20792 -20.76293 -18.66851 -18.03227 -17.63228 -16.45893 -16.15527 -15.45135 -15.28515 -15.05263 -14.67174 -14.39323 -14.08862 -14.00684 -13.52777 -13.41994 -13.25630 -12.96444 -12.78575 -12.51537 -12.46761 -12.21728 -11.89216 -11.72563 -11.53695 -11.39556 -11.06312 -10.95349 -10.88723 -10.79626 -10.68837 -10.62233 -10.19844 -10.04350 -9.85612 -9.49460 -9.19103 -9.06788 -8.73493 -8.48356 -8.31319 -7.75036 -5.98311 -4.05008 0.88520 1.09462 3.09023 3.31329 3.36515 3.38331 3.63940 3.98636 4.23816 4.38849 4.47859 4.56142 4.58503 4.66384 4.80935 4.86168 4.93996 4.97463 5.11290 5.31593 5.44502 5.45293 5.46347 5.56794 5.59006 5.66401 5.71249 5.74447 5.76754 5.84166 5.96408 6.02808 6.17168 6.20928 6.31391 6.35791 6.46168 6.66881 6.67780 6.71948 6.92058 7.11426 7.18991 7.35436 7.58630 7.70479 7.75982 8.06056 8.08368 8.15925 8.45711 8.98859 9.59408 11.07575 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.036797 B = 0.002398 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.751652 B =11673.142549 C =11897.741354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.117 4.117 13 C 0.061 3.939 14 N -0.534 5.534 15 C 0.103 3.897 16 C -0.196 4.196 17 C 0.173 3.827 18 N -0.551 5.551 19 C 0.473 3.527 20 N -0.447 5.447 21 C 0.055 3.945 22 C -0.125 4.125 23 C -0.132 4.132 24 C 0.038 3.962 25 N -0.524 5.524 26 C 0.189 3.811 27 C 0.068 3.932 28 H 0.260 0.740 29 H 0.030 0.970 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.025 0.975 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.040 0.960 37 H 0.163 0.837 38 H 0.096 0.904 39 H 0.050 0.950 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.172 0.828 47 H 0.061 0.939 48 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.686 -23.717 0.475 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.053 0.947 11 C -0.149 4.149 12 C -0.154 4.154 13 C -0.067 4.067 14 N -0.259 5.259 15 C -0.026 4.026 16 C -0.201 4.201 17 C 0.006 3.994 18 N -0.270 5.270 19 C 0.117 3.883 20 N -0.167 5.167 21 C -0.071 4.071 22 C -0.163 4.163 23 C -0.171 4.171 24 C -0.089 4.089 25 N -0.241 5.241 26 C 0.022 3.978 27 C -0.058 4.058 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.180 0.820 38 H 0.114 0.886 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.189 0.811 47 H 0.080 0.920 48 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 0.188 -24.314 -0.374 24.318 hybrid contribution 1.962 1.728 1.321 2.929 sum 2.150 -22.587 0.947 22.708 Atomic orbital electron populations 1.69881 1.05848 1.26478 1.50435 1.24936 0.94827 0.98963 0.95108 0.86684 0.79606 0.83294 0.78538 1.20293 1.21331 1.20394 1.21091 0.92767 0.90629 1.50991 0.92867 1.18661 0.92593 0.90196 0.94889 0.94746 1.21659 1.00053 0.94669 0.98483 1.21663 0.97153 0.96426 1.00207 1.22084 0.95752 0.98797 0.90033 1.62046 1.23744 1.01765 1.38307 1.20820 0.92987 0.87522 1.01312 1.21510 1.03770 0.99483 0.95379 1.22955 0.89010 0.87825 0.99592 1.68238 1.16769 1.18495 1.23465 1.21121 0.88999 0.93565 0.84634 1.61308 1.35266 1.02514 1.17650 1.23204 0.94840 0.89459 0.99614 1.22536 1.00963 0.96285 0.96493 1.22452 1.02478 0.95506 0.96619 1.22941 1.03298 0.92488 0.90209 1.68044 1.13948 1.07882 1.34203 1.23039 0.88467 0.89527 0.96786 1.22341 0.96465 0.88051 0.98943 0.92968 0.95141 0.89072 0.93548 0.92197 0.95709 0.92713 0.89656 0.94148 0.81951 0.88570 0.93131 0.90419 0.90186 0.91123 0.90552 0.89778 0.89791 0.81082 0.92030 0.96079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.19 11.35 55.43 0.63 -24.56 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -13.86 8.56 -34.44 -0.29 -14.16 16 8 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 9 C 0.06 1.35 2.26 -91.69 -0.21 1.15 16 10 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.11 -2.58 5.03 -26.61 -0.13 -2.72 16 12 C -0.12 -2.29 6.09 -26.65 -0.16 -2.45 16 13 C 0.06 1.05 5.19 -3.83 -0.02 1.03 16 14 N -0.53 -9.27 4.65 -236.12 -1.10 -10.37 16 15 C 0.10 1.39 5.16 -4.97 -0.03 1.36 16 16 C -0.20 -2.55 4.90 -104.35 -0.51 -3.07 16 17 C 0.17 2.21 9.23 -17.22 -0.16 2.05 16 18 N -0.55 -7.57 8.15 -13.93 -0.11 -7.68 16 19 C 0.47 6.69 6.98 -322.81 -2.25 4.44 16 20 N -0.45 -5.47 5.35 -171.42 -0.92 -6.38 16 21 C 0.05 0.52 6.31 -1.90 -0.01 0.51 16 22 C -0.12 -0.86 7.06 -24.87 -0.18 -1.03 16 23 C -0.13 -0.94 6.93 -25.37 -0.18 -1.11 16 24 C 0.04 0.38 6.33 -2.75 -0.02 0.36 16 25 N -0.52 -7.62 10.21 -13.93 -0.14 -7.77 16 26 C 0.19 2.52 11.00 -17.22 -0.19 2.33 16 27 C 0.07 1.38 4.68 -3.83 -0.02 1.36 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.09 2.40 6.15 -51.93 -0.32 2.08 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.87 5.80 -51.93 -0.30 0.57 16 35 H 0.09 1.05 7.94 -51.93 -0.41 0.64 16 36 H 0.04 0.51 8.08 -51.93 -0.42 0.09 16 37 H 0.16 1.75 8.00 -52.48 -0.42 1.33 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.49 7.99 -51.93 -0.42 0.08 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.92 6.46 -51.93 -0.34 0.59 16 45 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.17 1.94 8.06 -52.49 -0.42 1.52 16 47 H 0.06 1.20 8.01 -51.93 -0.42 0.78 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 371.85 15.07 5.60 5.60 Total: -1.00 -29.89 371.85 -13.59 -43.48 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -8.08 Total: -0.03 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -4.45 Total: -8.31 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -1.64 Total: -56.76 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.89 -13.59 -43.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175067.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.928 kcal (2) G-P(sol) polarization free energy of solvation -29.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds