Wall clock time and date at job start Tue Mar 31 2020 10:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00085 * 2 1 4 4 H 1.48497 * 109.47255 * 240.00194 * 3 2 1 5 5 H 1.48500 * 109.47130 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47287 * 119.99873 * 3 2 1 7 7 C 1.37873 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00046 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00277 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.50469 * 59.99702 * 9 7 2 11 11 C 1.53119 * 109.50255 * 299.91902 * 9 7 2 12 12 C 1.53115 * 109.16284 * 182.36459 * 11 9 7 13 13 C 1.53040 * 109.27691 * 57.65464 * 12 11 9 14 14 N 1.46843 * 109.52392 * 300.82256 * 13 12 11 15 15 C 1.46900 * 111.00190 * 185.84009 * 14 13 12 16 16 C 1.50704 * 109.47010 * 66.04310 * 15 14 13 17 17 C 1.38603 * 120.72014 * 269.72350 * 16 15 14 18 18 N 1.32283 * 119.19413 * 179.78832 * 17 16 15 19 19 C 1.32495 * 120.73794 * 0.47352 * 18 17 16 20 20 N 1.38404 * 119.21209 * 179.75155 * 19 18 17 21 21 C 1.48533 * 111.00489 * 242.62619 * 20 19 18 22 22 C 1.54932 * 103.22867 * 159.72410 * 21 20 19 23 23 C 1.54598 * 102.92393 * 322.58549 * 22 21 20 24 24 C 1.47905 * 111.00406 * 0.02562 * 20 19 18 25 25 N 1.32489 * 121.56802 * 359.77553 * 19 18 17 26 26 C 1.32274 * 120.74282 * 359.97438 * 25 19 18 27 27 C 1.46846 * 111.20060 * 61.74295 * 14 13 12 28 28 H 0.97001 * 120.00053 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.52152 * 302.27232 * 11 9 7 30 30 H 1.08999 * 109.52204 * 62.39287 * 11 9 7 31 31 H 1.09001 * 109.50414 * 177.59756 * 12 11 9 32 32 H 1.08999 * 109.50578 * 297.71448 * 12 11 9 33 33 H 1.08997 * 109.46185 * 60.83867 * 13 12 11 34 34 H 1.08996 * 109.46026 * 180.80323 * 13 12 11 35 35 H 1.08995 * 109.47103 * 186.04094 * 15 14 13 36 36 H 1.08998 * 109.46780 * 306.04650 * 15 14 13 37 37 H 1.08003 * 120.40406 * 359.97438 * 17 16 15 38 38 H 1.09004 * 110.66517 * 278.16452 * 21 20 19 39 39 H 1.08998 * 110.66340 * 41.28637 * 21 20 19 40 40 H 1.09005 * 110.72255 * 204.23088 * 22 21 20 41 41 H 1.08997 * 110.88009 * 81.02297 * 22 21 20 42 42 H 1.09004 * 110.30951 * 263.04191 * 23 22 21 43 43 H 1.08994 * 110.39090 * 140.91581 * 23 22 21 44 44 H 1.09000 * 109.91213 * 333.50621 * 24 20 19 45 45 H 1.09006 * 109.91754 * 94.60056 * 24 20 19 46 46 H 1.07989 * 120.40426 * 180.02562 * 26 25 19 47 47 H 1.08996 * 109.46322 * 178.24672 * 27 14 13 48 48 H 1.08991 * 109.46240 * 58.27106 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6244 -2.5569 -0.8918 11 6 0.3715 -2.5827 1.2489 12 6 -0.3449 -3.9358 1.2700 13 6 0.6945 -5.0585 1.2351 14 7 1.5098 -4.9349 0.0201 15 6 2.4265 -6.0746 -0.1170 16 6 1.6314 -7.3342 -0.3452 17 6 1.2127 -8.1108 0.7238 18 7 0.5127 -9.2084 0.4890 19 6 0.2196 -9.5723 -0.7509 20 7 -0.5102 -10.7295 -0.9605 21 6 0.2805 -11.7261 -1.7272 22 6 -0.4343 -13.0640 -1.4121 23 6 -0.8305 -12.9029 0.0735 24 6 -0.8474 -11.3833 0.3226 25 7 0.6090 -8.8552 -1.7946 26 6 1.3077 -7.7443 -1.6291 27 6 2.2442 -3.6635 0.0004 28 1 -0.4850 0.8400 0.0004 29 1 0.9935 -2.4860 2.1388 30 1 -0.3652 -1.7796 1.2304 31 1 -0.9397 -4.0185 2.1797 32 1 -0.9966 -4.0161 0.3999 33 1 1.3371 -4.9858 2.1126 34 1 0.1872 -6.0232 1.2356 35 1 3.0914 -5.9061 -0.9640 36 1 3.0168 -6.1775 0.7936 37 1 1.4525 -7.8216 1.7364 38 1 0.2399 -11.5103 -2.7949 39 1 1.3126 -11.7496 -1.3774 40 1 0.2472 -13.9050 -1.5404 41 1 -1.3193 -13.1881 -2.0361 42 1 -0.0928 -13.3834 0.7162 43 1 -1.8190 -13.3263 0.2510 44 1 -0.1063 -11.1226 1.0782 45 1 -1.8383 -11.0688 0.6505 46 1 1.6218 -7.1638 -2.4837 47 1 2.8624 -3.6150 -0.8960 48 1 2.8795 -3.5973 0.8836 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597175067.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:36 Heat of formation + Delta-G solvation = 48.667186 kcal Electronic energy + Delta-G solvation = -26385.887505 eV Core-core repulsion = 22861.089566 eV Total energy + Delta-G solvation = -3524.797939 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.37882 -40.09559 -39.34476 -36.01852 -34.80216 -34.39742 -33.17595 -31.74535 -30.95261 -29.97638 -27.06957 -26.93619 -25.66883 -24.45858 -23.38376 -22.81937 -22.09106 -21.69286 -20.36583 -18.92044 -18.62279 -18.41649 -16.99508 -16.85438 -16.50603 -16.19346 -15.96548 -15.72465 -15.36283 -14.98348 -14.86654 -14.57434 -14.45763 -14.34963 -14.03320 -13.81266 -13.50537 -13.43174 -13.22466 -12.84439 -12.76169 -12.61833 -12.54061 -12.34650 -12.18395 -11.96078 -11.91924 -11.76905 -11.70481 -11.43216 -11.36470 -11.06708 -10.82451 -10.65658 -10.36338 -10.17318 -9.45195 -9.09812 -8.06166 -6.20383 -0.12721 0.09977 1.43231 1.44208 1.51658 2.21273 2.43706 2.61741 3.08399 3.21071 3.23588 3.54507 3.70052 3.77944 3.80823 3.85804 3.93161 4.09837 4.16894 4.24187 4.27016 4.42376 4.47957 4.57744 4.62888 4.65828 4.74229 4.77551 4.84556 4.89335 4.90304 4.95372 4.98607 5.00727 5.08827 5.11987 5.19401 5.24573 5.25592 5.37637 5.52749 5.56255 5.65036 5.70597 5.96305 6.12228 6.15960 6.22737 6.32114 6.46715 6.93303 7.08294 7.47792 8.98227 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.036797 B = 0.002398 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.751652 B =11673.142549 C =11897.741354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.533 4.533 8 H 0.056 0.944 9 C 0.052 3.948 10 H -0.007 1.007 11 C -0.103 4.103 12 C -0.111 4.111 13 C 0.069 3.931 14 N -0.547 5.547 15 C 0.109 3.891 16 C -0.199 4.199 17 C 0.173 3.827 18 N -0.560 5.560 19 C 0.464 3.536 20 N -0.463 5.463 21 C 0.053 3.947 22 C -0.116 4.116 23 C -0.125 4.125 24 C 0.036 3.964 25 N -0.545 5.545 26 C 0.183 3.817 27 C 0.084 3.916 28 H 0.259 0.741 29 H 0.026 0.974 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.185 0.815 38 H 0.090 0.910 39 H 0.046 0.954 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.186 0.814 47 H 0.065 0.935 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.875 -25.539 1.121 25.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.196 1.196 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.572 4.572 8 H 0.074 0.926 9 C 0.033 3.967 10 H 0.012 0.988 11 C -0.141 4.141 12 C -0.149 4.149 13 C -0.059 4.059 14 N -0.272 5.272 15 C -0.019 4.019 16 C -0.205 4.205 17 C 0.006 3.994 18 N -0.279 5.279 19 C 0.107 3.893 20 N -0.184 5.184 21 C -0.072 4.072 22 C -0.154 4.154 23 C -0.164 4.164 24 C -0.091 4.091 25 N -0.263 5.263 26 C 0.016 3.984 27 C -0.043 4.043 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.077 0.923 37 H 0.202 0.798 38 H 0.109 0.891 39 H 0.065 0.935 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.202 0.798 47 H 0.084 0.916 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 1.386 -26.166 0.269 26.204 hybrid contribution 1.543 2.260 1.089 2.945 sum 2.929 -23.906 1.358 24.123 Atomic orbital electron populations 1.70044 1.07277 1.27041 1.51359 1.25741 0.95608 1.02414 0.94930 0.85682 0.78369 0.79141 0.78870 1.19575 1.21334 1.19560 1.21510 0.93131 0.91998 1.50529 0.92592 1.18591 0.93062 0.91578 0.93482 0.98833 1.21456 0.99138 0.95802 0.97734 1.21569 0.97619 0.95377 1.00329 1.21995 0.95229 0.98187 0.90475 1.61914 1.24670 1.01896 1.38683 1.20830 0.92476 0.85857 1.02779 1.21429 1.04223 0.99449 0.95372 1.23349 0.88188 0.87347 1.00529 1.68329 1.17292 1.18982 1.23280 1.21465 0.88887 0.94152 0.84774 1.61362 1.35370 1.02794 1.18859 1.23275 0.94734 0.90259 0.98955 1.22548 1.01269 0.95341 0.96273 1.22451 1.03742 0.93240 0.96928 1.22994 1.02443 0.94473 0.89191 1.68078 1.14911 1.08596 1.34704 1.23349 0.88050 0.89351 0.97635 1.21982 0.95167 0.87939 0.99261 0.93199 0.95494 0.92700 0.91653 0.94033 0.94431 0.90971 0.88386 0.92292 0.79804 0.89124 0.93536 0.88217 0.89830 0.89884 0.89204 0.90755 0.90479 0.79761 0.91609 0.95801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.64 11.35 21.45 0.24 -53.40 16 2 C 0.01 0.64 5.30 84.65 0.45 1.09 16 3 Si 0.95 43.44 29.54 68.60 2.03 45.46 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.53 -29.00 8.56 25.60 0.22 -28.78 16 8 H 0.06 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.05 2.58 2.26 -11.49 -0.03 2.55 16 10 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 11 C -0.10 -4.91 5.03 30.67 0.15 -4.76 16 12 C -0.11 -4.32 6.09 30.65 0.19 -4.14 16 13 C 0.07 2.22 5.19 86.33 0.45 2.67 16 14 N -0.55 -18.13 4.65 -900.96 -4.19 -22.31 16 15 C 0.11 2.65 5.16 85.56 0.44 3.10 16 16 C -0.20 -4.80 4.90 -19.69 -0.10 -4.90 16 17 C 0.17 4.05 9.23 84.71 0.78 4.83 16 18 N -0.56 -14.67 8.15 -197.98 -1.61 -16.29 16 19 C 0.46 12.79 6.98 261.49 1.83 14.61 16 20 N -0.46 -11.00 5.35 -696.26 -3.73 -14.73 16 21 C 0.05 0.96 6.31 86.65 0.55 1.51 16 22 C -0.12 -1.34 7.06 31.80 0.22 -1.12 16 23 C -0.13 -1.50 6.93 31.47 0.22 -1.28 16 24 C 0.04 0.69 6.33 86.45 0.55 1.23 16 25 N -0.55 -15.56 10.21 -198.00 -2.02 -17.58 16 26 C 0.18 4.67 11.00 84.71 0.93 5.61 16 27 C 0.08 3.29 4.68 86.33 0.40 3.69 16 28 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 3.00 6.15 -2.39 -0.01 2.99 16 31 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 2.11 5.80 -2.39 -0.01 2.09 16 35 H 0.10 2.16 7.94 -2.39 -0.02 2.14 16 36 H 0.06 1.27 8.08 -2.39 -0.02 1.25 16 37 H 0.19 3.39 8.00 -2.91 -0.02 3.36 16 38 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 39 H 0.05 0.87 7.99 -2.39 -0.02 0.85 16 40 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 1.56 6.46 -2.39 -0.02 1.55 16 45 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 46 H 0.19 3.99 8.06 -2.92 -0.02 3.96 16 47 H 0.07 2.50 8.01 -2.39 -0.02 2.48 16 48 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -65.96 371.85 -1.09 -67.06 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.93 Total: 15.86 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 7.26 Total: -4.08 kcal Atomic # 7 Polarization: -113.00 SS G_CDS: -11.30 Total: -124.30 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -65.96 -1.09 -67.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175067.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.726 kcal (2) G-P(sol) polarization free energy of solvation -65.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds