Wall clock time and date at job start Tue Mar 31 2020 10:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99932 * 2 1 4 4 H 1.48500 * 109.47362 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46956 * 299.99997 * 3 2 1 6 6 H 1.48498 * 109.47155 * 59.99620 * 3 2 1 7 7 C 1.37883 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99526 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00199 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.53881 * 299.90513 * 9 7 2 11 11 C 1.53123 * 109.50296 * 60.00045 * 9 7 2 12 12 C 1.53120 * 109.21163 * 177.56339 * 11 9 7 13 13 C 1.53048 * 109.27450 * 302.43753 * 12 11 9 14 14 N 1.46848 * 109.57298 * 59.08726 * 13 12 11 15 15 C 1.46892 * 110.99938 * 174.18963 * 14 13 12 16 16 C 1.50707 * 109.47333 * 314.20763 * 15 14 13 17 17 C 1.38596 * 120.72375 * 269.72651 * 16 15 14 18 18 N 1.32280 * 119.19761 * 179.71413 * 17 16 15 19 19 C 1.32495 * 120.73835 * 0.56707 * 18 17 16 20 20 N 1.38404 * 119.21258 * 179.72383 * 19 18 17 21 21 C 1.48525 * 111.00168 * 242.57788 * 20 19 18 22 22 C 1.54943 * 103.22890 * 159.72602 * 21 20 19 23 23 C 1.54595 * 102.91832 * 322.58917 * 22 21 20 24 24 C 1.47899 * 111.00470 * 359.97438 * 20 19 18 25 25 N 1.32488 * 121.56260 * 359.70487 * 19 18 17 26 26 C 1.32265 * 120.74538 * 0.02562 * 25 19 18 27 27 C 1.46842 * 111.19688 * 298.28804 * 14 13 12 28 28 H 0.96992 * 120.00214 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.52319 * 297.50132 * 11 9 7 30 30 H 1.08995 * 109.52318 * 57.62814 * 11 9 7 31 31 H 1.09000 * 109.50719 * 62.32149 * 12 11 9 32 32 H 1.09003 * 109.50116 * 182.43702 * 12 11 9 33 33 H 1.08999 * 109.41208 * 299.06816 * 13 12 11 34 34 H 1.09000 * 109.46050 * 179.13236 * 13 12 11 35 35 H 1.08997 * 109.47524 * 74.20701 * 15 14 13 36 36 H 1.09003 * 109.47304 * 194.21052 * 15 14 13 37 37 H 1.07999 * 120.40035 * 359.97438 * 17 16 15 38 38 H 1.08998 * 110.67196 * 278.16242 * 21 20 19 39 39 H 1.08997 * 110.66715 * 41.29258 * 21 20 19 40 40 H 1.09000 * 110.72564 * 204.22906 * 22 21 20 41 41 H 1.09002 * 110.71896 * 80.94593 * 22 21 20 42 42 H 1.09000 * 110.31031 * 263.04056 * 23 22 21 43 43 H 1.08998 * 110.38818 * 140.91482 * 23 22 21 44 44 H 1.09003 * 109.91554 * 333.50361 * 24 20 19 45 45 H 1.09001 * 109.92105 * 94.60167 * 24 20 19 46 46 H 1.08006 * 120.40342 * 179.97438 * 26 25 19 47 47 H 1.09001 * 109.46203 * 301.72398 * 27 14 13 48 48 H 1.09006 * 109.45199 * 181.75359 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6256 -2.5582 0.8925 11 6 0.3700 -2.5819 -1.2479 12 6 -0.3456 -3.9354 -1.2711 13 6 0.6946 -5.0575 -1.2373 14 7 1.5113 -4.9348 -0.0230 15 6 2.4288 -6.0740 0.1116 16 6 1.6820 -7.3551 -0.1575 17 6 1.0625 -8.0435 0.8736 18 7 0.4103 -9.1619 0.6024 19 6 0.3553 -9.6306 -0.6356 20 7 -0.3310 -10.8068 -0.8828 21 6 0.5826 -11.8574 -1.4002 22 6 -0.1898 -13.1702 -1.1161 23 6 -0.8591 -12.8890 0.2488 24 6 -0.9104 -11.3543 0.3630 25 7 0.9412 -8.9997 -1.6426 26 6 1.6050 -7.8737 -1.4406 27 6 2.2449 -3.6629 -0.0029 28 1 -0.4850 0.8400 -0.0004 29 1 -0.3679 -1.7799 -1.2271 30 1 0.9907 -2.4827 -2.1384 31 1 -0.9969 -4.0177 -0.4010 32 1 -0.9407 -4.0168 -2.1807 33 1 1.3360 -4.9835 -2.1154 34 1 0.1878 -6.0225 -1.2381 35 1 3.2435 -5.9711 -0.6051 36 1 2.8350 -6.0958 1.1229 37 1 1.1080 -7.6690 1.8856 38 1 0.7467 -11.7316 -2.4704 39 1 1.5294 -11.8437 -0.8605 40 1 0.4968 -14.0136 -1.0427 41 1 -0.9417 -13.3493 -1.8848 42 1 -0.2604 -13.3086 1.0573 43 1 -1.8667 -13.3040 0.2703 44 1 -0.3237 -11.0259 1.2210 45 1 -1.9428 -11.0214 0.4700 46 1 2.0809 -7.3642 -2.2655 47 1 2.8791 -3.5955 -0.8869 48 1 2.8642 -3.6152 0.8929 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597175068.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:40 Heat of formation + Delta-G solvation = 67.326407 kcal Electronic energy + Delta-G solvation = -26461.083624 eV Core-core repulsion = 22937.094809 eV Total energy + Delta-G solvation = -3523.988815 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.46977 -39.12594 -38.05346 -34.56142 -33.82613 -32.94644 -31.82228 -30.28196 -29.52028 -29.26312 -25.98788 -25.05287 -24.61188 -23.40123 -21.92549 -21.59866 -21.09634 -20.76474 -18.66735 -18.06728 -17.63074 -16.47439 -16.18402 -15.53351 -15.24207 -15.07442 -14.72031 -14.42672 -14.07743 -13.86587 -13.55539 -13.41868 -13.29573 -13.04802 -12.80029 -12.52871 -12.45919 -12.16195 -11.90700 -11.73411 -11.54361 -11.50329 -11.06498 -10.98046 -10.90493 -10.79675 -10.70224 -10.59428 -10.24699 -9.98351 -9.83401 -9.49855 -9.21051 -9.07955 -8.71926 -8.50865 -8.31438 -7.72639 -5.98740 -4.05203 0.83684 1.06476 3.05927 3.28958 3.37258 3.40345 3.61007 3.97590 4.21848 4.38546 4.46389 4.56052 4.58133 4.62347 4.75183 4.83246 4.90036 4.96121 5.10133 5.31384 5.43680 5.44761 5.45230 5.54750 5.60868 5.64634 5.70047 5.75036 5.77423 5.85286 5.98185 6.03630 6.13358 6.21277 6.29620 6.36335 6.46953 6.63476 6.68645 6.72194 6.92513 7.08892 7.19110 7.35805 7.59095 7.70679 7.76286 8.04754 8.05954 8.15986 8.45780 8.99114 9.59328 11.07223 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.039751 B = 0.002389 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.215667 B =11715.644912 C =11820.284500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.117 4.117 13 C 0.062 3.938 14 N -0.533 5.533 15 C 0.103 3.897 16 C -0.202 4.202 17 C 0.187 3.813 18 N -0.550 5.550 19 C 0.474 3.526 20 N -0.447 5.447 21 C 0.055 3.945 22 C -0.125 4.125 23 C -0.132 4.132 24 C 0.038 3.962 25 N -0.524 5.524 26 C 0.177 3.823 27 C 0.068 3.932 28 H 0.259 0.741 29 H 0.091 0.909 30 H 0.030 0.970 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.024 0.976 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.171 0.829 38 H 0.095 0.905 39 H 0.050 0.950 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.166 0.834 47 H 0.021 0.979 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.640 -23.855 -0.712 23.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.036 3.964 10 H 0.053 0.947 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.066 4.066 14 N -0.257 5.257 15 C -0.026 4.026 16 C -0.207 4.207 17 C 0.020 3.980 18 N -0.269 5.269 19 C 0.117 3.883 20 N -0.168 5.168 21 C -0.071 4.071 22 C -0.163 4.163 23 C -0.171 4.171 24 C -0.089 4.089 25 N -0.241 5.241 26 C 0.008 3.992 27 C -0.059 4.059 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.188 0.812 38 H 0.114 0.886 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.183 0.817 47 H 0.040 0.960 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.247 -24.505 -0.876 24.522 hybrid contribution 1.850 1.791 -0.126 2.578 sum 2.097 -22.714 -1.002 22.833 Atomic orbital electron populations 1.69898 1.05850 1.26249 1.50635 1.24943 0.94826 0.98991 0.95128 0.86572 0.80102 0.83960 0.77546 1.19859 1.21115 1.21043 1.21168 0.92848 0.90601 1.50709 0.92751 1.18666 0.92578 0.90229 0.94894 0.94744 1.21658 1.00065 0.94655 0.98471 1.21670 0.97163 0.96434 1.00199 1.22105 0.95674 0.98717 0.90145 1.62206 1.23484 1.01809 1.38236 1.20894 0.93063 0.86697 1.01923 1.21521 1.03606 0.99894 0.95715 1.22984 0.87339 0.87619 1.00057 1.68282 1.21403 1.15776 1.21400 1.21132 0.89062 0.93615 0.84457 1.61297 1.27194 1.01249 1.27012 1.23207 0.93475 0.88728 1.01735 1.22542 0.99684 0.96399 0.97649 1.22451 1.01820 0.95219 0.97565 1.22945 1.01464 0.93484 0.91048 1.68011 1.11752 1.10044 1.34273 1.23053 0.90883 0.89227 0.95987 1.22352 0.96486 0.88068 0.98970 0.93086 0.89066 0.95137 0.92203 0.93571 0.95825 0.92753 0.94014 0.89702 0.81211 0.88626 0.93114 0.90382 0.90195 0.91085 0.90534 0.89690 0.89747 0.81690 0.96038 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 11.35 55.43 0.63 -24.54 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -13.84 8.56 -34.44 -0.29 -14.13 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.06 1.35 2.27 -91.69 -0.21 1.14 16 10 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.11 -2.60 5.02 -26.61 -0.13 -2.73 16 12 C -0.12 -2.32 6.10 -26.64 -0.16 -2.48 16 13 C 0.06 1.07 4.60 -3.83 -0.02 1.06 16 14 N -0.53 -9.29 4.80 -236.11 -1.13 -10.42 16 15 C 0.10 1.39 5.47 -4.98 -0.03 1.37 16 16 C -0.20 -2.61 4.14 -104.35 -0.43 -3.04 16 17 C 0.19 2.39 11.00 -17.23 -0.19 2.20 16 18 N -0.55 -7.51 8.15 -13.93 -0.11 -7.62 16 19 C 0.47 6.60 6.98 -322.82 -2.25 4.35 16 20 N -0.45 -5.39 5.35 -171.44 -0.92 -6.31 16 21 C 0.05 0.51 6.31 -1.90 -0.01 0.50 16 22 C -0.12 -0.85 7.06 -24.87 -0.18 -1.02 16 23 C -0.13 -0.93 6.93 -25.38 -0.18 -1.10 16 24 C 0.04 0.38 6.33 -2.76 -0.02 0.36 16 25 N -0.52 -7.46 10.21 -13.93 -0.14 -7.60 16 26 C 0.18 2.30 9.13 -17.23 -0.16 2.14 16 27 C 0.07 1.37 4.65 -3.84 -0.02 1.35 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.92 5.64 -51.93 -0.29 0.62 16 35 H 0.04 0.54 8.04 -51.93 -0.42 0.12 16 36 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 37 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.49 7.99 -51.93 -0.42 0.07 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.93 6.46 -51.93 -0.34 0.59 16 45 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.17 1.86 8.06 -52.48 -0.42 1.43 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 LS Contribution 370.95 15.07 5.59 5.59 Total: -1.00 -29.81 370.95 -13.56 -43.37 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -8.08 Total: -0.06 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -4.37 Total: -8.43 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -1.68 Total: -56.50 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.81 -13.56 -43.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175068.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.697 kcal (2) G-P(sol) polarization free energy of solvation -29.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds