Wall clock time and date at job start Tue Mar 31 2020 10:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99932 * 2 1 4 4 H 1.48500 * 109.47362 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46956 * 299.99997 * 3 2 1 6 6 H 1.48498 * 109.47155 * 59.99620 * 3 2 1 7 7 C 1.37883 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99526 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00199 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.53881 * 299.90513 * 9 7 2 11 11 C 1.53123 * 109.50296 * 60.00045 * 9 7 2 12 12 C 1.53120 * 109.21163 * 177.56339 * 11 9 7 13 13 C 1.53048 * 109.27450 * 302.43753 * 12 11 9 14 14 N 1.46848 * 109.57298 * 59.08726 * 13 12 11 15 15 C 1.46892 * 110.99938 * 174.18963 * 14 13 12 16 16 C 1.50707 * 109.47333 * 314.20763 * 15 14 13 17 17 C 1.38596 * 120.72375 * 269.72651 * 16 15 14 18 18 N 1.32280 * 119.19761 * 179.71413 * 17 16 15 19 19 C 1.32495 * 120.73835 * 0.56707 * 18 17 16 20 20 N 1.38404 * 119.21258 * 179.72383 * 19 18 17 21 21 C 1.48525 * 111.00168 * 242.57788 * 20 19 18 22 22 C 1.54943 * 103.22890 * 159.72602 * 21 20 19 23 23 C 1.54595 * 102.91832 * 322.58917 * 22 21 20 24 24 C 1.47899 * 111.00470 * 359.97438 * 20 19 18 25 25 N 1.32488 * 121.56260 * 359.70487 * 19 18 17 26 26 C 1.32265 * 120.74538 * 0.02562 * 25 19 18 27 27 C 1.46842 * 111.19688 * 298.28804 * 14 13 12 28 28 H 0.96992 * 120.00214 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.52319 * 297.50132 * 11 9 7 30 30 H 1.08995 * 109.52318 * 57.62814 * 11 9 7 31 31 H 1.09000 * 109.50719 * 62.32149 * 12 11 9 32 32 H 1.09003 * 109.50116 * 182.43702 * 12 11 9 33 33 H 1.08999 * 109.41208 * 299.06816 * 13 12 11 34 34 H 1.09000 * 109.46050 * 179.13236 * 13 12 11 35 35 H 1.08997 * 109.47524 * 74.20701 * 15 14 13 36 36 H 1.09003 * 109.47304 * 194.21052 * 15 14 13 37 37 H 1.07999 * 120.40035 * 359.97438 * 17 16 15 38 38 H 1.08998 * 110.67196 * 278.16242 * 21 20 19 39 39 H 1.08997 * 110.66715 * 41.29258 * 21 20 19 40 40 H 1.09000 * 110.72564 * 204.22906 * 22 21 20 41 41 H 1.09002 * 110.71896 * 80.94593 * 22 21 20 42 42 H 1.09000 * 110.31031 * 263.04056 * 23 22 21 43 43 H 1.08998 * 110.38818 * 140.91482 * 23 22 21 44 44 H 1.09003 * 109.91554 * 333.50361 * 24 20 19 45 45 H 1.09001 * 109.92105 * 94.60167 * 24 20 19 46 46 H 1.08006 * 120.40342 * 179.97438 * 26 25 19 47 47 H 1.09001 * 109.46203 * 301.72398 * 27 14 13 48 48 H 1.09006 * 109.45199 * 181.75359 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6256 -2.5582 0.8925 11 6 0.3700 -2.5819 -1.2479 12 6 -0.3456 -3.9354 -1.2711 13 6 0.6946 -5.0575 -1.2373 14 7 1.5113 -4.9348 -0.0230 15 6 2.4288 -6.0740 0.1116 16 6 1.6820 -7.3551 -0.1575 17 6 1.0625 -8.0435 0.8736 18 7 0.4103 -9.1619 0.6024 19 6 0.3553 -9.6306 -0.6356 20 7 -0.3310 -10.8068 -0.8828 21 6 0.5826 -11.8574 -1.4002 22 6 -0.1898 -13.1702 -1.1161 23 6 -0.8591 -12.8890 0.2488 24 6 -0.9104 -11.3543 0.3630 25 7 0.9412 -8.9997 -1.6426 26 6 1.6050 -7.8737 -1.4406 27 6 2.2449 -3.6629 -0.0029 28 1 -0.4850 0.8400 -0.0004 29 1 -0.3679 -1.7799 -1.2271 30 1 0.9907 -2.4827 -2.1384 31 1 -0.9969 -4.0177 -0.4010 32 1 -0.9407 -4.0168 -2.1807 33 1 1.3360 -4.9835 -2.1154 34 1 0.1878 -6.0225 -1.2381 35 1 3.2435 -5.9711 -0.6051 36 1 2.8350 -6.0958 1.1229 37 1 1.1080 -7.6690 1.8856 38 1 0.7467 -11.7316 -2.4704 39 1 1.5294 -11.8437 -0.8605 40 1 0.4968 -14.0136 -1.0427 41 1 -0.9417 -13.3493 -1.8848 42 1 -0.2604 -13.3086 1.0573 43 1 -1.8667 -13.3040 0.2703 44 1 -0.3237 -11.0259 1.2210 45 1 -1.9428 -11.0214 0.4700 46 1 2.0809 -7.3642 -2.2655 47 1 2.8791 -3.5955 -0.8869 48 1 2.8642 -3.6152 0.8929 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597175068.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:39 Heat of formation + Delta-G solvation = 50.534187 kcal Electronic energy + Delta-G solvation = -26461.811789 eV Core-core repulsion = 22937.094809 eV Total energy + Delta-G solvation = -3524.716980 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.44137 -40.17075 -39.32201 -36.05998 -34.82636 -34.37683 -33.19028 -31.78742 -30.89647 -29.98054 -27.16542 -26.90743 -25.65285 -24.54844 -23.44645 -22.76454 -22.02770 -21.73626 -20.36487 -18.94365 -18.62221 -18.42790 -17.08545 -16.85021 -16.51480 -16.18670 -16.01092 -15.75349 -15.25734 -14.96824 -14.85088 -14.68613 -14.51957 -14.35438 -14.03101 -13.76945 -13.52227 -13.40516 -13.24748 -12.92682 -12.83313 -12.63870 -12.54279 -12.35480 -12.18432 -11.97466 -11.87767 -11.82128 -11.70695 -11.43786 -11.37615 -11.00552 -10.86335 -10.64532 -10.37910 -10.21265 -9.46700 -9.08514 -8.06714 -6.20629 -0.16480 0.08018 1.41298 1.43450 1.54265 2.18935 2.43479 2.60344 3.07621 3.20466 3.21333 3.52673 3.66468 3.71776 3.80418 3.84290 3.90456 4.09038 4.14103 4.21227 4.26609 4.40632 4.47565 4.58065 4.62072 4.65247 4.72005 4.77787 4.85225 4.87275 4.89936 4.93541 4.97239 5.01182 5.08642 5.11646 5.18711 5.21431 5.25128 5.35922 5.51921 5.55437 5.65143 5.68124 5.95230 6.10850 6.14955 6.21631 6.29789 6.46184 6.93197 7.05845 7.47598 8.98140 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.039751 B = 0.002389 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.215667 B =11715.644912 C =11820.284500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.531 4.531 8 H 0.056 0.944 9 C 0.052 3.948 10 H -0.004 1.004 11 C -0.102 4.102 12 C -0.111 4.111 13 C 0.072 3.928 14 N -0.543 5.543 15 C 0.109 3.891 16 C -0.205 4.205 17 C 0.184 3.816 18 N -0.561 5.561 19 C 0.465 3.535 20 N -0.462 5.462 21 C 0.053 3.947 22 C -0.116 4.116 23 C -0.126 4.126 24 C 0.036 3.964 25 N -0.542 5.542 26 C 0.175 3.825 27 C 0.083 3.917 28 H 0.259 0.741 29 H 0.055 0.945 30 H 0.025 0.975 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.034 0.966 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.188 0.812 38 H 0.091 0.909 39 H 0.046 0.954 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.182 0.818 47 H 0.023 0.977 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.799 -25.599 -0.946 25.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.570 4.570 8 H 0.074 0.926 9 C 0.033 3.967 10 H 0.014 0.986 11 C -0.141 4.141 12 C -0.149 4.149 13 C -0.056 4.056 14 N -0.268 5.268 15 C -0.019 4.019 16 C -0.211 4.211 17 C 0.017 3.983 18 N -0.280 5.280 19 C 0.108 3.892 20 N -0.183 5.183 21 C -0.072 4.072 22 C -0.154 4.154 23 C -0.164 4.164 24 C -0.091 4.091 25 N -0.260 5.260 26 C 0.007 3.993 27 C -0.045 4.045 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.119 0.881 37 H 0.205 0.795 38 H 0.110 0.890 39 H 0.064 0.936 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.199 0.801 47 H 0.042 0.958 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.414 -26.279 -1.109 26.340 hybrid contribution 1.441 2.294 -0.042 2.710 sum 2.855 -23.984 -1.151 24.181 Atomic orbital electron populations 1.70049 1.07263 1.26921 1.51481 1.25741 0.95613 1.02414 0.94947 0.85570 0.79226 0.79822 0.77404 1.18867 1.20905 1.20843 1.21560 0.93135 0.91960 1.50311 0.92598 1.18592 0.93037 0.91574 0.93495 0.98600 1.21455 0.99161 0.95690 0.97769 1.21580 0.97619 0.95413 1.00318 1.21967 0.95151 0.97819 0.90649 1.62081 1.24390 1.01983 1.38340 1.20907 0.92552 0.85092 1.03361 1.21420 1.04093 0.99749 0.95805 1.23345 0.86675 0.87309 1.00954 1.68363 1.21967 1.16238 1.21408 1.21474 0.88893 0.94231 0.84559 1.61356 1.27558 1.01489 1.27881 1.23283 0.93340 0.89346 1.01275 1.22555 0.99820 0.95560 0.97477 1.22449 1.02961 0.92848 0.98120 1.22993 1.00574 0.95608 0.89960 1.68060 1.12589 1.10718 1.34599 1.23360 0.90390 0.88929 0.96571 1.22004 0.95211 0.87947 0.99303 0.93194 0.92603 0.95594 0.93711 0.91994 0.94812 0.91657 0.92568 0.88133 0.79540 0.89026 0.93554 0.88201 0.89791 0.89915 0.89203 0.90787 0.90481 0.80063 0.95848 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.48 11.35 21.45 0.24 -53.24 16 2 C 0.01 0.63 5.30 84.66 0.45 1.08 16 3 Si 0.95 43.45 29.54 68.60 2.03 45.47 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.53 -28.87 8.56 25.60 0.22 -28.66 16 8 H 0.06 2.95 7.74 -2.91 -0.02 2.92 16 9 C 0.05 2.58 2.27 -11.49 -0.03 2.56 16 10 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 11 C -0.10 -4.92 5.02 30.68 0.15 -4.76 16 12 C -0.11 -4.42 6.10 30.65 0.19 -4.23 16 13 C 0.07 2.40 4.60 86.33 0.40 2.80 16 14 N -0.54 -18.12 4.80 -900.91 -4.33 -22.44 16 15 C 0.11 2.67 5.47 85.56 0.47 3.14 16 16 C -0.20 -4.89 4.14 -19.69 -0.08 -4.97 16 17 C 0.18 4.42 11.00 84.71 0.93 5.35 16 18 N -0.56 -14.81 8.15 -198.00 -1.61 -16.42 16 19 C 0.46 12.57 6.98 261.49 1.83 14.40 16 20 N -0.46 -10.77 5.35 -696.31 -3.73 -14.50 16 21 C 0.05 0.93 6.31 86.65 0.55 1.48 16 22 C -0.12 -1.31 7.06 31.80 0.22 -1.08 16 23 C -0.13 -1.49 6.93 31.47 0.22 -1.28 16 24 C 0.04 0.68 6.33 86.44 0.55 1.23 16 25 N -0.54 -14.82 10.21 -197.99 -2.02 -16.84 16 26 C 0.18 4.24 9.13 84.72 0.77 5.01 16 27 C 0.08 3.26 4.65 86.33 0.40 3.66 16 28 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.06 3.07 6.15 -2.39 -0.01 3.05 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 2.08 5.64 -2.39 -0.01 2.06 16 35 H 0.06 1.26 8.04 -2.39 -0.02 1.24 16 36 H 0.10 2.18 8.10 -2.39 -0.02 2.16 16 37 H 0.19 3.68 8.06 -2.91 -0.02 3.66 16 38 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.05 0.85 7.99 -2.39 -0.02 0.83 16 40 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 1.57 6.46 -2.39 -0.02 1.56 16 45 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.18 3.64 8.06 -2.91 -0.02 3.62 16 47 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.07 2.55 8.12 -2.38 -0.02 2.53 16 Total: -1.00 -65.27 370.95 -1.26 -66.53 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.93 Total: 15.71 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 7.24 Total: -4.28 kcal Atomic # 7 Polarization: -111.99 SS G_CDS: -11.44 Total: -123.44 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -65.27 -1.26 -66.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175068.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.064 kcal (2) G-P(sol) polarization free energy of solvation -65.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds