Wall clock time and date at job start Tue Mar 31 2020 11:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 119.99704 * 2 1 4 4 N 1.46499 * 109.47145 * 125.44111 * 3 2 1 5 5 C 1.36746 * 127.13639 * 275.72457 * 4 3 2 6 6 C 1.50699 * 126.34481 * 359.97438 * 5 4 3 7 7 C 1.53784 * 113.61220 * 219.13625 * 6 5 4 8 8 C 1.53948 * 87.02032 * 220.04747 * 7 6 5 9 9 C 1.53777 * 113.61654 * 121.52957 * 6 5 4 10 10 N 1.30288 * 107.30572 * 180.02562 * 5 4 3 11 11 N 1.28532 * 110.05541 * 359.72806 * 10 5 4 12 12 C 1.31215 * 109.85845 * 0.45029 * 11 10 5 13 13 N 1.38573 * 126.47194 * 179.82012 * 12 11 10 14 14 C 1.46853 * 110.99902 * 106.45166 * 13 12 11 15 15 C 1.53038 * 109.52382 * 174.16040 * 14 13 12 16 16 C 1.53122 * 109.27957 * 59.17518 * 15 14 13 17 17 C 1.53109 * 109.16144 * 302.34826 * 16 15 14 18 18 H 1.09003 * 109.50868 * 297.70820 * 17 16 15 19 19 C 1.50707 * 109.50616 * 177.59102 * 17 16 15 20 20 H 1.07989 * 120.00375 * 240.19777 * 19 17 16 21 21 C 1.37878 * 119.99287 * 60.19200 * 19 17 16 22 22 N 1.31512 * 120.00462 * 0.02562 * 21 19 17 23 23 Si 1.86807 * 119.99736 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.46765 * 90.00134 * 23 21 19 25 25 H 1.48493 * 109.47205 * 210.00434 * 23 21 19 26 26 H 1.48505 * 109.46713 * 330.00160 * 23 21 19 27 27 C 1.46848 * 111.00287 * 342.23900 * 13 12 11 28 28 H 1.08010 * 119.99843 * 179.97438 * 1 2 3 29 29 H 1.07993 * 120.00470 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.00150 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47292 * 5.44039 * 3 2 1 32 32 H 1.09004 * 109.47133 * 245.43610 * 3 2 1 33 33 H 1.08997 * 112.84873 * 350.32738 * 6 5 4 34 34 H 1.09003 * 113.61372 * 334.56394 * 7 6 5 35 35 H 1.08996 * 113.61477 * 105.46635 * 7 6 5 36 36 H 1.09003 * 113.53845 * 270.80936 * 8 7 6 37 37 H 1.09000 * 113.74380 * 139.94381 * 8 7 6 38 38 H 1.08997 * 113.61467 * 254.52490 * 9 6 5 39 39 H 1.09001 * 113.61513 * 25.34651 * 9 6 5 40 40 H 1.08994 * 109.46014 * 294.17708 * 14 13 12 41 41 H 1.09001 * 109.46034 * 54.14190 * 14 13 12 42 42 H 1.09001 * 109.50358 * 299.23904 * 15 14 13 43 43 H 1.08999 * 109.53600 * 179.14052 * 15 14 13 44 44 H 1.08999 * 109.52390 * 182.43936 * 16 15 14 45 45 H 1.09003 * 109.51774 * 62.25033 * 16 15 14 46 46 H 0.97003 * 120.00330 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.46148 * 305.85487 * 27 13 12 48 48 H 1.09002 * 109.45899 * 65.83626 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0012 1.3277 1.1253 5 6 2.7312 1.6829 2.4179 6 6 1.3989 2.1308 2.9614 7 6 1.5042 3.2714 3.9874 8 6 0.4027 2.5488 4.7840 9 6 0.8738 1.2504 4.1077 10 7 3.8396 1.5633 3.0922 11 7 4.7829 1.1545 2.3208 12 6 4.3254 0.9991 1.1009 13 7 5.0488 0.5756 -0.0025 14 6 4.6950 -0.8024 -0.3665 15 6 5.4013 -1.1847 -1.6692 16 6 6.9155 -1.0600 -1.4787 17 6 7.2523 0.3717 -1.0531 18 1 6.9589 1.0645 -1.8418 19 6 8.7344 0.4878 -0.8060 20 1 9.0985 0.7734 0.1697 21 6 9.6255 0.2291 -1.8259 22 7 9.1821 -0.1183 -3.0142 23 14 11.4627 0.3723 -1.5196 24 1 11.9914 -0.9371 -1.0601 25 1 12.1450 0.7677 -2.7778 26 1 11.7121 1.4002 -0.4772 27 6 6.4923 0.7090 0.2318 28 1 -0.5400 -0.9354 -0.0004 29 1 -0.5400 0.9352 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3591 2.1313 0.0974 32 1 2.6151 1.4062 -0.9347 33 1 0.6626 2.3139 2.1790 34 1 2.4638 3.3075 4.5033 35 1 1.1965 4.2409 3.5957 36 1 -0.6066 2.8474 4.5005 37 1 0.5607 2.5616 5.8624 38 1 0.0577 0.5907 3.8130 39 1 1.6605 0.7318 4.6556 40 1 5.0074 -1.4796 0.4283 41 1 3.6161 -0.8763 -0.5031 42 1 5.0788 -0.5164 -2.4677 43 1 5.1509 -2.2125 -1.9316 44 1 7.4208 -1.2895 -2.4168 45 1 7.2440 -1.7562 -0.7071 46 1 9.8090 -0.2999 -3.7318 47 1 6.7188 1.7327 0.5297 48 1 6.7964 0.0244 1.0237 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597286251.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:12 Heat of formation + Delta-G solvation = 121.227593 kcal Electronic energy + Delta-G solvation = -27281.903282 eV Core-core repulsion = 23760.251798 eV Total energy + Delta-G solvation = -3521.651484 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.77756 -38.87491 -38.16872 -36.27936 -33.87999 -32.77176 -31.94617 -30.02194 -29.36607 -26.94550 -25.80852 -25.76408 -25.01259 -23.79089 -21.82263 -21.26973 -21.19224 -19.93393 -19.32133 -18.55317 -17.53226 -16.60853 -16.14959 -15.78803 -15.55756 -15.28137 -14.96665 -14.50608 -14.16616 -14.01326 -13.42020 -13.29426 -12.99472 -12.62856 -12.60482 -12.56822 -12.36793 -12.33753 -11.99165 -11.73979 -11.32541 -11.08255 -10.94165 -10.82737 -10.73131 -10.69145 -10.67813 -10.24388 -10.21414 -10.05121 -9.92398 -9.84664 -9.58288 -9.25212 -9.17754 -8.73947 -8.32736 -7.83846 -6.00081 -4.05481 1.65814 1.97184 2.60842 3.10147 3.32522 3.39020 3.43763 4.09052 4.24337 4.39449 4.43400 4.46476 4.48129 4.52217 4.69125 4.73694 4.90691 5.17851 5.23036 5.27580 5.31880 5.46303 5.47124 5.53389 5.60011 5.63835 5.71750 5.77404 5.80999 5.82091 5.93746 6.04823 6.13464 6.22285 6.27011 6.33000 6.36759 6.42711 6.51410 6.65249 6.81727 6.90527 7.04296 7.27329 7.38165 7.70936 7.74195 7.99327 8.09927 8.42459 8.97858 9.08052 9.59163 11.06381 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.020607 B = 0.003351 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.427426 B = 8353.600545 C = 9371.985472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.176 4.176 3 C 0.138 3.862 4 N -0.476 5.476 5 C 0.175 3.825 6 C -0.024 4.024 7 C -0.123 4.123 8 C -0.141 4.141 9 C -0.122 4.122 10 N -0.283 5.283 11 N -0.321 5.321 12 C 0.372 3.628 13 N -0.458 5.458 14 C 0.065 3.935 15 C -0.116 4.116 16 C -0.114 4.114 17 C 0.055 3.945 18 H 0.035 0.965 19 C -0.513 4.513 20 H 0.057 0.943 21 C 0.064 3.936 22 N -0.890 5.890 23 Si 0.892 3.108 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.273 1.273 27 C 0.084 3.916 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.117 0.883 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.039 0.961 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.095 0.905 45 H 0.035 0.965 46 H 0.260 0.740 47 H 0.068 0.932 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.919 1.619 6.796 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.195 4.195 3 C 0.015 3.985 4 N -0.170 5.170 5 C -0.093 4.093 6 C -0.045 4.045 7 C -0.161 4.161 8 C -0.178 4.178 9 C -0.161 4.161 10 N -0.122 5.122 11 N -0.165 5.165 12 C 0.016 3.984 13 N -0.183 5.183 14 C -0.062 4.062 15 C -0.154 4.154 16 C -0.152 4.152 17 C 0.036 3.964 18 H 0.053 0.947 19 C -0.551 4.551 20 H 0.075 0.925 21 C -0.137 4.137 22 N -0.529 5.529 23 Si 0.720 3.280 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.198 1.198 27 C -0.041 4.041 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.135 0.865 31 H 0.112 0.888 32 H 0.130 0.870 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.114 0.886 45 H 0.054 0.946 46 H 0.070 0.930 47 H 0.087 0.913 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -20.947 1.891 7.344 22.278 hybrid contribution 0.317 -0.493 -0.650 0.875 sum -20.631 1.397 6.693 21.734 Atomic orbital electron populations 1.23900 0.95363 1.02440 0.98579 1.23221 0.96354 0.98343 1.01544 1.20911 0.91697 0.96601 0.89295 1.46224 1.09179 1.51751 1.09860 1.24438 0.98489 1.05368 0.80961 1.20929 0.88719 0.98475 0.96376 1.22986 1.00486 0.96378 0.96241 1.22829 0.98470 0.96379 1.00133 1.22936 1.00738 0.96481 0.95904 1.73864 0.95942 1.16617 1.25808 1.74740 1.22850 1.21143 0.97811 1.22953 0.82315 1.01020 0.92130 1.58872 1.09355 1.22845 1.27223 1.22287 0.99145 0.85854 0.98923 1.21714 0.99124 0.99580 0.94979 1.21718 0.90754 0.99305 1.03420 1.18733 0.93532 0.93245 0.90844 0.94659 1.21098 0.90476 1.46412 0.97162 0.92458 1.24912 0.98790 0.95016 0.95023 1.69877 1.34237 1.46980 1.01790 0.86587 0.85370 0.78431 0.77605 1.20709 1.21278 1.19824 1.22383 0.79581 1.01405 1.00737 0.87684 0.88156 0.86545 0.88779 0.86960 0.88205 0.88493 0.91227 0.90163 0.90863 0.91304 0.89098 0.94251 0.92009 0.91764 0.92647 0.88622 0.94630 0.93024 0.91302 0.93855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 14.32 29.02 0.42 -0.73 16 2 C -0.18 -1.65 9.26 -36.02 -0.33 -1.98 16 3 C 0.14 1.48 5.87 -5.19 -0.03 1.45 16 4 N -0.48 -7.02 2.79 -115.37 -0.32 -7.35 16 5 C 0.17 2.57 7.11 -154.01 -1.09 1.47 16 6 C -0.02 -0.24 4.08 -90.96 -0.37 -0.62 16 7 C -0.12 -1.15 7.63 -25.83 -0.20 -1.34 16 8 C -0.14 -1.04 8.09 -25.83 -0.21 -1.25 16 9 C -0.12 -1.11 7.63 -25.92 -0.20 -1.30 16 10 N -0.28 -5.21 11.83 32.99 0.39 -4.82 16 11 N -0.32 -6.65 11.45 30.31 0.35 -6.30 16 12 C 0.37 6.91 6.90 -318.89 -2.20 4.71 16 13 N -0.46 -8.78 4.63 -174.55 -0.81 -9.59 16 14 C 0.06 1.11 5.38 -3.83 -0.02 1.09 16 15 C -0.12 -2.11 6.09 -26.65 -0.16 -2.27 16 16 C -0.11 -2.60 5.03 -26.61 -0.13 -2.73 16 17 C 0.06 1.37 2.26 -91.69 -0.21 1.16 16 18 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 19 C -0.51 -14.06 8.56 -34.44 -0.29 -14.35 16 20 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 21 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 22 N -0.89 -24.94 11.36 55.43 0.63 -24.31 16 23 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 27 C 0.08 1.89 4.10 -3.83 -0.02 1.87 16 28 H 0.10 0.63 8.06 -52.48 -0.42 0.21 16 29 H 0.10 0.54 7.84 -52.49 -0.41 0.13 16 30 H 0.12 1.22 6.36 -52.49 -0.33 0.89 16 31 H 0.09 0.77 7.14 -51.93 -0.37 0.40 16 32 H 0.11 1.29 8.10 -51.93 -0.42 0.87 16 33 H 0.10 0.80 7.32 -51.93 -0.38 0.42 16 34 H 0.10 1.11 7.81 -51.93 -0.41 0.70 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 1.00 8.09 -51.93 -0.42 0.58 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.89 5.10 -51.93 -0.26 0.63 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.10 2.43 6.17 -51.93 -0.32 2.11 16 45 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.07 1.62 8.10 -51.93 -0.42 1.20 16 48 H 0.04 1.02 8.11 -51.93 -0.42 0.59 16 LS Contribution 378.06 15.07 5.70 5.70 Total: -1.00 -30.79 378.06 -12.17 -42.96 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.94 Total: 0.56 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -5.15 Total: -13.16 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: 0.24 Total: -52.37 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.79 -12.17 -42.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597286251.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.188 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds