Wall clock time and date at job start Tue Mar 31 2020 11:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 119.99704 * 2 1 4 4 N 1.46499 * 109.47145 * 125.44111 * 3 2 1 5 5 C 1.36746 * 127.13639 * 275.72457 * 4 3 2 6 6 C 1.50699 * 126.34481 * 359.97438 * 5 4 3 7 7 C 1.53784 * 113.61220 * 219.13625 * 6 5 4 8 8 C 1.53948 * 87.02032 * 220.04747 * 7 6 5 9 9 C 1.53777 * 113.61654 * 121.52957 * 6 5 4 10 10 N 1.30288 * 107.30572 * 180.02562 * 5 4 3 11 11 N 1.28532 * 110.05541 * 359.72806 * 10 5 4 12 12 C 1.31215 * 109.85845 * 0.45029 * 11 10 5 13 13 N 1.38573 * 126.47194 * 179.82012 * 12 11 10 14 14 C 1.46853 * 110.99902 * 106.45166 * 13 12 11 15 15 C 1.53038 * 109.52382 * 174.16040 * 14 13 12 16 16 C 1.53122 * 109.27957 * 59.17518 * 15 14 13 17 17 C 1.53109 * 109.16144 * 302.34826 * 16 15 14 18 18 H 1.09003 * 109.50868 * 297.70820 * 17 16 15 19 19 C 1.50707 * 109.50616 * 177.59102 * 17 16 15 20 20 H 1.07989 * 120.00375 * 240.19777 * 19 17 16 21 21 C 1.37878 * 119.99287 * 60.19200 * 19 17 16 22 22 N 1.31512 * 120.00462 * 0.02562 * 21 19 17 23 23 Si 1.86807 * 119.99736 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.46765 * 90.00134 * 23 21 19 25 25 H 1.48493 * 109.47205 * 210.00434 * 23 21 19 26 26 H 1.48505 * 109.46713 * 330.00160 * 23 21 19 27 27 C 1.46848 * 111.00287 * 342.23900 * 13 12 11 28 28 H 1.08010 * 119.99843 * 179.97438 * 1 2 3 29 29 H 1.07993 * 120.00470 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.00150 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47292 * 5.44039 * 3 2 1 32 32 H 1.09004 * 109.47133 * 245.43610 * 3 2 1 33 33 H 1.08997 * 112.84873 * 350.32738 * 6 5 4 34 34 H 1.09003 * 113.61372 * 334.56394 * 7 6 5 35 35 H 1.08996 * 113.61477 * 105.46635 * 7 6 5 36 36 H 1.09003 * 113.53845 * 270.80936 * 8 7 6 37 37 H 1.09000 * 113.74380 * 139.94381 * 8 7 6 38 38 H 1.08997 * 113.61467 * 254.52490 * 9 6 5 39 39 H 1.09001 * 113.61513 * 25.34651 * 9 6 5 40 40 H 1.08994 * 109.46014 * 294.17708 * 14 13 12 41 41 H 1.09001 * 109.46034 * 54.14190 * 14 13 12 42 42 H 1.09001 * 109.50358 * 299.23904 * 15 14 13 43 43 H 1.08999 * 109.53600 * 179.14052 * 15 14 13 44 44 H 1.08999 * 109.52390 * 182.43936 * 16 15 14 45 45 H 1.09003 * 109.51774 * 62.25033 * 16 15 14 46 46 H 0.97003 * 120.00330 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.46148 * 305.85487 * 27 13 12 48 48 H 1.09002 * 109.45899 * 65.83626 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0012 1.3277 1.1253 5 6 2.7312 1.6829 2.4179 6 6 1.3989 2.1308 2.9614 7 6 1.5042 3.2714 3.9874 8 6 0.4027 2.5488 4.7840 9 6 0.8738 1.2504 4.1077 10 7 3.8396 1.5633 3.0922 11 7 4.7829 1.1545 2.3208 12 6 4.3254 0.9991 1.1009 13 7 5.0488 0.5756 -0.0025 14 6 4.6950 -0.8024 -0.3665 15 6 5.4013 -1.1847 -1.6692 16 6 6.9155 -1.0600 -1.4787 17 6 7.2523 0.3717 -1.0531 18 1 6.9589 1.0645 -1.8418 19 6 8.7344 0.4878 -0.8060 20 1 9.0985 0.7734 0.1697 21 6 9.6255 0.2291 -1.8259 22 7 9.1821 -0.1183 -3.0142 23 14 11.4627 0.3723 -1.5196 24 1 11.9914 -0.9371 -1.0601 25 1 12.1450 0.7677 -2.7778 26 1 11.7121 1.4002 -0.4772 27 6 6.4923 0.7090 0.2318 28 1 -0.5400 -0.9354 -0.0004 29 1 -0.5400 0.9352 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3591 2.1313 0.0974 32 1 2.6151 1.4062 -0.9347 33 1 0.6626 2.3139 2.1790 34 1 2.4638 3.3075 4.5033 35 1 1.1965 4.2409 3.5957 36 1 -0.6066 2.8474 4.5005 37 1 0.5607 2.5616 5.8624 38 1 0.0577 0.5907 3.8130 39 1 1.6605 0.7318 4.6556 40 1 5.0074 -1.4796 0.4283 41 1 3.6161 -0.8763 -0.5031 42 1 5.0788 -0.5164 -2.4677 43 1 5.1509 -2.2125 -1.9316 44 1 7.4208 -1.2895 -2.4168 45 1 7.2440 -1.7562 -0.7071 46 1 9.8090 -0.2999 -3.7318 47 1 6.7188 1.7327 0.5297 48 1 6.7964 0.0244 1.0237 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597286251.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:11 Heat of formation + Delta-G solvation = 106.541956 kcal Electronic energy + Delta-G solvation = -27282.540099 eV Core-core repulsion = 23760.251798 eV Total energy + Delta-G solvation = -3522.288301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.05487 -40.11602 -39.32144 -37.21893 -35.72118 -33.84776 -33.55867 -31.87037 -30.64719 -27.87807 -27.12356 -26.60437 -26.51569 -25.40788 -23.43864 -22.51827 -22.23878 -20.91052 -20.47978 -19.93579 -18.87579 -18.19012 -17.41999 -17.13865 -16.69760 -16.47949 -16.07774 -15.91500 -15.53934 -15.29326 -14.78673 -14.53900 -14.47338 -14.25031 -13.99246 -13.55959 -13.38517 -13.19810 -13.16219 -12.88000 -12.77447 -12.65895 -12.62206 -12.43320 -11.94005 -11.87002 -11.82650 -11.69168 -11.45654 -11.39442 -11.26609 -11.18794 -11.04787 -10.83612 -10.54878 -10.47367 -10.39667 -9.32508 -8.11990 -6.24999 0.70536 0.93698 1.40461 1.41193 1.51532 1.58380 1.77796 2.41352 2.74539 3.15642 3.31220 3.61501 3.70026 3.72015 3.75460 3.84429 3.95975 4.00571 4.03280 4.08349 4.22647 4.36461 4.39397 4.46557 4.55691 4.57826 4.73469 4.75128 4.81873 4.90986 4.91953 4.94353 4.94781 5.00776 5.05396 5.07653 5.15829 5.24040 5.25950 5.40496 5.56337 5.59084 5.61218 5.62112 5.67589 5.74641 5.95958 6.09034 6.28008 6.35456 6.83196 7.42418 7.75631 8.93097 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.020607 B = 0.003351 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.427426 B = 8353.600545 C = 9371.985472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.207 4.207 3 C 0.131 3.869 4 N -0.467 5.467 5 C 0.197 3.803 6 C -0.028 4.028 7 C -0.128 4.128 8 C -0.123 4.123 9 C -0.122 4.122 10 N -0.325 5.325 11 N -0.367 5.367 12 C 0.353 3.647 13 N -0.455 5.455 14 C 0.069 3.931 15 C -0.105 4.105 16 C -0.107 4.107 17 C 0.059 3.941 18 H 0.007 0.993 19 C -0.540 4.540 20 H 0.045 0.955 21 C 0.022 3.978 22 N -0.910 5.910 23 Si 0.952 3.048 24 H -0.275 1.275 25 H -0.278 1.278 26 H -0.274 1.274 27 C 0.106 3.894 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.100 0.900 31 H 0.128 0.872 32 H 0.101 0.899 33 H 0.135 0.865 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.027 0.973 41 H 0.097 0.903 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.023 0.977 46 H 0.263 0.737 47 H 0.047 0.953 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.705 1.756 6.617 26.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.225 4.225 3 C 0.011 3.989 4 N -0.160 5.160 5 C -0.072 4.072 6 C -0.048 4.048 7 C -0.166 4.166 8 C -0.161 4.161 9 C -0.160 4.160 10 N -0.164 5.164 11 N -0.211 5.211 12 C -0.005 4.005 13 N -0.180 5.180 14 C -0.057 4.057 15 C -0.143 4.143 16 C -0.145 4.145 17 C 0.040 3.960 18 H 0.026 0.974 19 C -0.579 4.579 20 H 0.063 0.937 21 C -0.178 4.178 22 N -0.549 5.549 23 Si 0.778 3.222 24 H -0.200 1.200 25 H -0.204 1.204 26 H -0.199 1.199 27 C -0.020 4.020 28 H 0.136 0.864 29 H 0.143 0.857 30 H 0.118 0.882 31 H 0.145 0.855 32 H 0.120 0.880 33 H 0.153 0.847 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.128 0.872 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.046 0.954 41 H 0.115 0.885 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.042 0.958 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -24.766 2.024 7.159 25.859 hybrid contribution 1.351 -0.502 -0.564 1.548 sum -23.415 1.522 6.595 24.373 Atomic orbital electron populations 1.24198 0.94289 1.04258 0.94041 1.22977 0.97159 0.96752 1.05656 1.21272 0.91421 0.98919 0.87324 1.46476 1.08137 1.50467 1.10967 1.25393 0.99170 1.02123 0.80483 1.21415 0.86831 0.99077 0.97506 1.22977 1.00080 0.97236 0.96351 1.22812 0.99034 0.94276 0.99940 1.22896 1.00511 0.97358 0.95255 1.73778 0.97075 1.18929 1.26603 1.74608 1.24853 1.22458 0.99183 1.22803 0.84051 1.02217 0.91439 1.58797 1.07321 1.24088 1.27746 1.22327 1.01038 0.84560 0.97756 1.21603 0.95476 1.01589 0.95591 1.21513 0.94158 0.97428 1.01390 1.18604 0.92686 0.93881 0.90861 0.97449 1.21400 0.92381 1.47153 0.96955 0.93660 1.25609 1.02816 0.94553 0.94795 1.69985 1.35549 1.47040 1.02283 0.85644 0.80431 0.78487 0.77632 1.20017 1.20374 1.19872 1.21876 0.82000 0.99437 0.98723 0.86391 0.85671 0.88237 0.85450 0.88046 0.84684 0.91482 0.89520 0.87216 0.90747 0.89133 0.91925 0.95422 0.88514 0.91544 0.89579 0.91166 0.95771 0.92776 0.93418 0.95740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 14.32 67.78 0.97 -0.19 16 2 C -0.21 -3.20 9.26 25.65 0.24 -2.97 16 3 C 0.13 2.48 5.87 85.63 0.50 2.99 16 4 N -0.47 -13.38 2.79 -518.92 -1.45 -14.83 16 5 C 0.20 5.62 7.11 137.64 0.98 6.60 16 6 C -0.03 -0.48 4.08 -11.01 -0.04 -0.53 16 7 C -0.13 -2.12 7.63 31.18 0.24 -1.88 16 8 C -0.12 -1.41 8.09 31.18 0.25 -1.15 16 9 C -0.12 -1.87 7.63 31.12 0.24 -1.63 16 10 N -0.33 -12.39 11.83 -49.54 -0.59 -12.98 16 11 N -0.37 -15.97 11.45 -58.01 -0.66 -16.64 16 12 C 0.35 13.48 6.90 260.12 1.79 15.27 16 13 N -0.46 -18.05 4.63 -706.15 -3.27 -21.32 16 14 C 0.07 2.39 5.38 86.32 0.46 2.85 16 15 C -0.10 -3.78 6.09 30.65 0.19 -3.60 16 16 C -0.11 -5.04 5.03 30.67 0.15 -4.89 16 17 C 0.06 3.06 2.26 -11.49 -0.03 3.03 16 18 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 19 C -0.54 -31.09 8.56 25.60 0.22 -30.87 16 20 H 0.05 2.64 7.74 -2.92 -0.02 2.61 16 21 C 0.02 1.23 5.30 84.66 0.45 1.67 16 22 N -0.91 -52.22 11.36 21.45 0.24 -51.97 16 23 Si 0.95 44.70 29.54 68.60 2.03 46.72 16 24 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 27 C 0.11 5.08 4.10 86.33 0.35 5.44 16 28 H 0.12 0.82 8.06 -2.91 -0.02 0.79 16 29 H 0.13 0.54 7.84 -2.91 -0.02 0.51 16 30 H 0.10 1.88 6.36 -2.91 -0.02 1.86 16 31 H 0.13 1.52 7.14 -2.39 -0.02 1.50 16 32 H 0.10 2.15 8.10 -2.38 -0.02 2.13 16 33 H 0.14 1.42 7.32 -2.39 -0.02 1.41 16 34 H 0.07 1.53 7.81 -2.39 -0.02 1.52 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 1.34 8.09 -2.39 -0.02 1.32 16 40 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.10 2.68 5.10 -2.39 -0.01 2.67 16 42 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 44 H 0.07 3.69 6.17 -2.39 -0.01 3.67 16 45 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 47 H 0.05 2.42 8.10 -2.39 -0.02 2.40 16 48 H 0.02 1.23 8.11 -2.39 -0.02 1.21 16 Total: -1.00 -72.64 378.06 4.20 -68.44 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.93 Total: 12.42 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 6.97 Total: -9.85 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -5.73 Total: -117.74 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -72.64 4.20 -68.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597286251.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.987 kcal (2) G-P(sol) polarization free energy of solvation -72.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds