Wall clock time and date at job start Tue Mar 31 2020 11:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 120.00096 * 2 1 4 4 N 1.46505 * 109.46952 * 126.60620 * 3 2 1 5 5 C 1.36742 * 127.13246 * 276.78589 * 4 3 2 6 6 C 1.50697 * 126.35102 * 0.05645 * 5 4 3 7 7 C 1.52998 * 109.47016 * 90.00174 * 6 5 4 8 8 C 1.52996 * 117.49821 * 243.74687 * 7 6 5 9 9 C 1.52999 * 117.49893 * 175.08574 * 7 6 5 10 10 N 1.30298 * 107.30089 * 180.02562 * 5 4 3 11 11 N 1.28531 * 110.05443 * 359.72737 * 10 5 4 12 12 C 1.31219 * 109.85872 * 0.45487 * 11 10 5 13 13 N 1.38579 * 126.47242 * 179.82124 * 12 11 10 14 14 C 1.46851 * 110.99518 * 111.32723 * 13 12 11 15 15 C 1.53042 * 109.51643 * 174.15998 * 14 13 12 16 16 C 1.53118 * 109.27778 * 59.18185 * 15 14 13 17 17 C 1.53114 * 109.16104 * 302.34014 * 16 15 14 18 18 H 1.09002 * 109.50499 * 297.67671 * 17 16 15 19 19 C 1.50699 * 109.50557 * 177.59561 * 17 16 15 20 20 H 1.07998 * 120.00087 * 274.66991 * 19 17 16 21 21 C 1.37886 * 119.99656 * 94.94057 * 19 17 16 22 22 N 1.31511 * 119.99331 * 185.77195 * 21 19 17 23 23 Si 1.86789 * 120.00092 * 5.77386 * 21 19 17 24 24 H 1.48502 * 109.47218 * 84.57419 * 23 21 19 25 25 H 1.48497 * 109.47428 * 204.57257 * 23 21 19 26 26 H 1.48501 * 109.47633 * 324.57613 * 23 21 19 27 27 C 1.46840 * 110.99507 * 347.07936 * 13 12 11 28 28 H 1.08005 * 120.00106 * 179.97438 * 1 2 3 29 29 H 1.08002 * 119.99853 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99853 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46693 * 6.61111 * 3 2 1 32 32 H 1.08994 * 109.47322 * 246.60858 * 3 2 1 33 33 H 1.09006 * 109.46933 * 209.99682 * 6 5 4 34 34 H 1.08996 * 109.47001 * 330.00292 * 6 5 4 35 35 H 1.09004 * 115.55130 * 29.41570 * 7 6 5 36 36 H 1.08992 * 117.50065 * 0.02562 * 8 7 6 37 37 H 1.09001 * 117.50137 * 145.02102 * 8 7 6 38 38 H 1.09001 * 117.49933 * 214.97924 * 9 7 6 39 39 H 1.08998 * 117.50206 * 359.97438 * 9 7 6 40 40 H 1.08997 * 109.46250 * 54.14889 * 14 13 12 41 41 H 1.08996 * 109.46388 * 294.17237 * 14 13 12 42 42 H 1.08997 * 109.50343 * 299.23793 * 15 14 13 43 43 H 1.09002 * 109.49950 * 179.11967 * 15 14 13 44 44 H 1.09006 * 109.52229 * 182.43677 * 16 15 14 45 45 H 1.08997 * 109.57772 * 62.28001 * 16 15 14 46 46 H 0.97001 * 119.99351 * 179.97438 * 22 21 19 47 47 H 1.08995 * 109.43741 * 65.80530 * 27 13 12 48 48 H 1.09002 * 109.49952 * 305.83353 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0210 1.3161 1.1088 5 6 2.7694 1.6389 2.4136 6 6 1.4407 2.0540 2.9907 7 6 0.6822 0.8139 3.4680 8 6 -0.6359 0.4788 2.7672 9 6 -0.6467 1.0344 4.1935 10 7 3.8913 1.5203 3.0654 11 7 4.8262 1.1420 2.2685 12 6 4.3489 1.0071 1.0537 13 7 5.0582 0.6184 -0.0716 14 6 4.6334 -0.7112 -0.5280 15 6 5.3297 -1.0447 -1.8494 16 6 6.8466 -1.0159 -1.6429 17 6 7.2567 0.3640 -1.1215 18 1 7.0090 1.1222 -1.8644 19 6 8.7406 0.3823 -0.8594 20 1 9.1264 0.0308 0.0861 21 6 9.6054 0.8530 -1.8247 22 7 10.9049 0.7644 -1.6429 23 14 8.9312 1.6165 -3.3904 24 1 8.6291 3.0507 -3.1515 25 1 9.9399 1.4970 -4.4737 26 1 7.6885 0.9091 -3.7910 27 6 6.5046 0.6577 0.1786 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3611 2.1301 0.1183 32 1 2.5985 1.4157 -0.9431 33 1 1.6045 2.7262 3.8330 34 1 0.8562 2.5654 2.2260 35 1 1.3032 -0.0192 3.7972 36 1 -0.9625 1.1415 1.9659 37 1 -0.8823 -0.5748 2.6357 38 1 -0.9002 0.3460 4.9998 39 1 -0.9804 2.0628 4.3312 40 1 3.5534 -0.7168 -0.6750 41 1 4.9017 -1.4555 0.2218 42 1 5.0510 -0.3087 -2.6035 43 1 5.0262 -2.0381 -2.1800 44 1 7.3472 -1.2104 -2.5915 45 1 7.1311 -1.7786 -0.9180 46 1 11.5132 1.0952 -2.3221 47 1 6.7641 -0.0924 0.9256 48 1 6.7838 1.6459 0.5444 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597287640.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:20 Heat of formation + Delta-G solvation = 127.412059 kcal Electronic energy + Delta-G solvation = -27391.156517 eV Core-core repulsion = 23869.773212 eV Total energy + Delta-G solvation = -3521.383305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.82421 -38.61865 -37.88606 -36.25258 -33.94217 -32.94385 -32.35373 -30.86115 -30.44125 -27.27907 -26.90333 -25.17975 -24.03546 -22.78874 -21.93654 -21.38519 -21.19414 -20.59814 -19.73384 -18.81268 -17.55880 -16.93358 -16.29690 -16.16244 -15.76471 -15.17867 -14.60259 -14.37371 -14.25819 -14.14256 -13.92025 -13.52881 -13.31906 -13.22595 -12.76731 -12.56328 -12.43755 -12.34140 -12.07972 -11.83900 -11.66585 -11.38894 -11.18589 -11.04864 -10.78536 -10.74766 -10.39902 -10.30812 -10.22401 -10.10952 -9.91214 -9.80041 -9.63786 -9.51506 -9.29889 -8.97831 -8.51578 -7.92796 -6.07839 -4.07631 1.62452 1.92953 2.54114 3.05531 3.30072 3.38007 3.39593 3.47081 3.98860 4.19090 4.40422 4.41555 4.42353 4.49614 4.56729 4.77863 4.78859 4.93462 5.08208 5.14124 5.18417 5.23819 5.30220 5.31529 5.38942 5.45849 5.56130 5.58349 5.64064 5.73356 5.77943 5.90198 5.95978 5.99850 6.08612 6.14335 6.19288 6.24131 6.29807 6.36942 6.65084 6.67635 6.73317 6.89123 7.10406 7.30340 7.44460 7.58142 7.77613 8.51762 8.98372 9.02673 9.54694 11.05303 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.023280 B = 0.003446 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.455991 B = 8122.758403 C = 8704.090424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.179 4.179 3 C 0.139 3.861 4 N -0.475 5.475 5 C 0.168 3.832 6 C 0.007 3.993 7 C -0.144 4.144 8 C -0.176 4.176 9 C -0.177 4.177 10 N -0.282 5.282 11 N -0.319 5.319 12 C 0.372 3.628 13 N -0.461 5.461 14 C 0.061 3.939 15 C -0.119 4.119 16 C -0.116 4.116 17 C 0.021 3.979 18 H 0.039 0.961 19 C -0.512 4.512 20 H 0.075 0.925 21 C 0.074 3.926 22 N -0.898 5.898 23 Si 0.878 3.122 24 H -0.276 1.276 25 H -0.291 1.291 26 H -0.264 1.264 27 C 0.089 3.911 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.043 0.957 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.264 0.736 47 H 0.047 0.953 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.104 -0.671 3.186 27.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.198 4.198 3 C 0.016 3.984 4 N -0.170 5.170 5 C -0.099 4.099 6 C -0.033 4.033 7 C -0.164 4.164 8 C -0.213 4.213 9 C -0.214 4.214 10 N -0.122 5.122 11 N -0.163 5.163 12 C 0.016 3.984 13 N -0.185 5.185 14 C -0.065 4.065 15 C -0.157 4.157 16 C -0.154 4.154 17 C 0.002 3.998 18 H 0.058 0.942 19 C -0.550 4.550 20 H 0.093 0.907 21 C -0.128 4.128 22 N -0.535 5.535 23 Si 0.705 3.295 24 H -0.202 1.202 25 H -0.217 1.217 26 H -0.188 1.188 27 C -0.037 4.037 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.133 0.867 31 H 0.112 0.888 32 H 0.128 0.872 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.066 0.934 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -25.971 -0.288 3.848 26.256 hybrid contribution -0.922 -0.119 -1.491 1.757 sum -26.892 -0.406 2.357 26.999 Atomic orbital electron populations 1.23881 0.95356 1.02279 0.97888 1.23113 0.96309 0.98073 1.02305 1.20897 0.91148 0.96795 0.89538 1.46170 1.08669 1.52724 1.09467 1.24409 0.98442 1.06106 0.80971 1.19465 0.87146 0.96346 1.00317 1.22182 0.89905 0.99674 1.04615 1.23171 1.00855 1.01853 0.95434 1.23007 1.00416 1.02412 0.95607 1.73980 0.95991 1.16557 1.25631 1.74758 1.23006 1.21480 0.97055 1.22924 0.81987 1.01210 0.92279 1.58909 1.08500 1.26927 1.24181 1.22293 0.99170 0.87088 0.97998 1.21714 0.98240 1.00439 0.95321 1.21936 0.91580 1.00671 1.01198 1.19215 0.95468 0.92986 0.92150 0.94245 1.20889 0.88114 1.42708 1.03277 0.90712 1.25040 0.94660 0.95164 0.97980 1.69910 1.01909 1.46420 1.35267 0.86852 0.78903 0.80374 0.83358 1.20177 1.21725 1.18835 1.22365 0.78877 1.02474 0.99958 0.87726 0.88185 0.86684 0.88841 0.87236 0.88100 0.90383 0.87571 0.88604 0.88930 0.88730 0.88626 0.91399 0.93898 0.91668 0.92025 0.92391 0.92691 0.92602 0.93427 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 11.38 29.01 0.33 -0.57 16 2 C -0.18 -1.45 9.10 -36.03 -0.33 -1.78 16 3 C 0.14 1.34 5.63 -5.19 -0.03 1.31 16 4 N -0.47 -6.54 2.79 -115.37 -0.32 -6.86 16 5 C 0.17 2.35 7.28 -154.01 -1.12 1.23 16 6 C 0.01 0.06 5.87 -27.89 -0.16 -0.10 16 7 C -0.14 -1.21 5.72 -90.62 -0.52 -1.73 16 8 C -0.18 -1.09 8.01 -26.69 -0.21 -1.31 16 9 C -0.18 -1.13 10.25 -26.69 -0.27 -1.41 16 10 N -0.28 -5.15 12.18 32.99 0.40 -4.75 16 11 N -0.32 -6.46 11.40 30.31 0.35 -6.12 16 12 C 0.37 6.60 6.98 -318.88 -2.23 4.37 16 13 N -0.46 -8.30 4.62 -174.55 -0.81 -9.10 16 14 C 0.06 0.94 5.34 -3.83 -0.02 0.92 16 15 C -0.12 -1.88 6.09 -26.65 -0.16 -2.04 16 16 C -0.12 -2.32 5.27 -26.61 -0.14 -2.46 16 17 C 0.02 0.49 1.94 -91.69 -0.18 0.31 16 18 H 0.04 0.93 5.27 -51.93 -0.27 0.66 16 19 C -0.51 -14.18 8.86 -34.44 -0.31 -14.48 16 20 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 21 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 22 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 23 Si 0.88 21.35 27.00 -169.99 -4.59 16.76 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.26 -6.05 6.80 56.52 0.38 -5.66 16 27 C 0.09 1.90 4.10 -3.84 -0.02 1.89 16 28 H 0.10 0.51 8.06 -52.48 -0.42 0.09 16 29 H 0.10 0.44 7.01 -52.49 -0.37 0.07 16 30 H 0.12 1.07 6.56 -52.49 -0.34 0.72 16 31 H 0.09 0.68 7.13 -51.93 -0.37 0.31 16 32 H 0.11 1.12 8.04 -51.93 -0.42 0.70 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 0.56 7.16 -51.93 -0.37 0.19 16 35 H 0.11 1.12 8.07 -51.93 -0.42 0.70 16 36 H 0.10 0.49 6.42 -51.93 -0.33 0.16 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.86 4.67 -51.93 -0.24 0.62 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.05 1.07 8.13 -51.93 -0.42 0.65 16 48 H 0.08 1.82 8.09 -51.93 -0.42 1.40 16 LS Contribution 374.50 15.07 5.64 5.64 Total: -1.00 -32.66 374.50 -11.80 -44.46 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -7.79 Total: 0.34 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -5.46 Total: -13.84 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.39 Total: -53.37 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.59 Total: 16.76 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.66 -11.80 -44.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597287640.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.875 kcal (2) G-P(sol) polarization free energy of solvation -32.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds