Wall clock time and date at job start Tue Mar 31 2020 11:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 120.00096 * 2 1 4 4 N 1.46505 * 109.46952 * 126.60620 * 3 2 1 5 5 C 1.36742 * 127.13246 * 276.78589 * 4 3 2 6 6 C 1.50697 * 126.35102 * 0.05645 * 5 4 3 7 7 C 1.52998 * 109.47016 * 90.00174 * 6 5 4 8 8 C 1.52996 * 117.49821 * 243.74687 * 7 6 5 9 9 C 1.52999 * 117.49893 * 175.08574 * 7 6 5 10 10 N 1.30298 * 107.30089 * 180.02562 * 5 4 3 11 11 N 1.28531 * 110.05443 * 359.72737 * 10 5 4 12 12 C 1.31219 * 109.85872 * 0.45487 * 11 10 5 13 13 N 1.38579 * 126.47242 * 179.82124 * 12 11 10 14 14 C 1.46851 * 110.99518 * 111.32723 * 13 12 11 15 15 C 1.53042 * 109.51643 * 174.15998 * 14 13 12 16 16 C 1.53118 * 109.27778 * 59.18185 * 15 14 13 17 17 C 1.53114 * 109.16104 * 302.34014 * 16 15 14 18 18 H 1.09002 * 109.50499 * 297.67671 * 17 16 15 19 19 C 1.50699 * 109.50557 * 177.59561 * 17 16 15 20 20 H 1.07998 * 120.00087 * 274.66991 * 19 17 16 21 21 C 1.37886 * 119.99656 * 94.94057 * 19 17 16 22 22 N 1.31511 * 119.99331 * 185.77195 * 21 19 17 23 23 Si 1.86789 * 120.00092 * 5.77386 * 21 19 17 24 24 H 1.48502 * 109.47218 * 84.57419 * 23 21 19 25 25 H 1.48497 * 109.47428 * 204.57257 * 23 21 19 26 26 H 1.48501 * 109.47633 * 324.57613 * 23 21 19 27 27 C 1.46840 * 110.99507 * 347.07936 * 13 12 11 28 28 H 1.08005 * 120.00106 * 179.97438 * 1 2 3 29 29 H 1.08002 * 119.99853 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99853 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46693 * 6.61111 * 3 2 1 32 32 H 1.08994 * 109.47322 * 246.60858 * 3 2 1 33 33 H 1.09006 * 109.46933 * 209.99682 * 6 5 4 34 34 H 1.08996 * 109.47001 * 330.00292 * 6 5 4 35 35 H 1.09004 * 115.55130 * 29.41570 * 7 6 5 36 36 H 1.08992 * 117.50065 * 0.02562 * 8 7 6 37 37 H 1.09001 * 117.50137 * 145.02102 * 8 7 6 38 38 H 1.09001 * 117.49933 * 214.97924 * 9 7 6 39 39 H 1.08998 * 117.50206 * 359.97438 * 9 7 6 40 40 H 1.08997 * 109.46250 * 54.14889 * 14 13 12 41 41 H 1.08996 * 109.46388 * 294.17237 * 14 13 12 42 42 H 1.08997 * 109.50343 * 299.23793 * 15 14 13 43 43 H 1.09002 * 109.49950 * 179.11967 * 15 14 13 44 44 H 1.09006 * 109.52229 * 182.43677 * 16 15 14 45 45 H 1.08997 * 109.57772 * 62.28001 * 16 15 14 46 46 H 0.97001 * 119.99351 * 179.97438 * 22 21 19 47 47 H 1.08995 * 109.43741 * 65.80530 * 27 13 12 48 48 H 1.09002 * 109.49952 * 305.83353 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0210 1.3161 1.1088 5 6 2.7694 1.6389 2.4136 6 6 1.4407 2.0540 2.9907 7 6 0.6822 0.8139 3.4680 8 6 -0.6359 0.4788 2.7672 9 6 -0.6467 1.0344 4.1935 10 7 3.8913 1.5203 3.0654 11 7 4.8262 1.1420 2.2685 12 6 4.3489 1.0071 1.0537 13 7 5.0582 0.6184 -0.0716 14 6 4.6334 -0.7112 -0.5280 15 6 5.3297 -1.0447 -1.8494 16 6 6.8466 -1.0159 -1.6429 17 6 7.2567 0.3640 -1.1215 18 1 7.0090 1.1222 -1.8644 19 6 8.7406 0.3823 -0.8594 20 1 9.1264 0.0308 0.0861 21 6 9.6054 0.8530 -1.8247 22 7 10.9049 0.7644 -1.6429 23 14 8.9312 1.6165 -3.3904 24 1 8.6291 3.0507 -3.1515 25 1 9.9399 1.4970 -4.4737 26 1 7.6885 0.9091 -3.7910 27 6 6.5046 0.6577 0.1786 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3611 2.1301 0.1183 32 1 2.5985 1.4157 -0.9431 33 1 1.6045 2.7262 3.8330 34 1 0.8562 2.5654 2.2260 35 1 1.3032 -0.0192 3.7972 36 1 -0.9625 1.1415 1.9659 37 1 -0.8823 -0.5748 2.6357 38 1 -0.9002 0.3460 4.9998 39 1 -0.9804 2.0628 4.3312 40 1 3.5534 -0.7168 -0.6750 41 1 4.9017 -1.4555 0.2218 42 1 5.0510 -0.3087 -2.6035 43 1 5.0262 -2.0381 -2.1800 44 1 7.3472 -1.2104 -2.5915 45 1 7.1311 -1.7786 -0.9180 46 1 11.5132 1.0952 -2.3221 47 1 6.7641 -0.0924 0.9256 48 1 6.7838 1.6459 0.5444 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597287640.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:19 Heat of formation + Delta-G solvation = 109.683958 kcal Electronic energy + Delta-G solvation = -27391.925265 eV Core-core repulsion = 23869.773212 eV Total energy + Delta-G solvation = -3522.152054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.04647 -40.10875 -38.51785 -37.10004 -35.64868 -34.13745 -33.78323 -32.19519 -31.90303 -28.38779 -27.70714 -27.13714 -25.51954 -23.38466 -23.25933 -22.46664 -22.23165 -21.53556 -20.48643 -20.45963 -19.17354 -18.42514 -17.46150 -17.27345 -16.69569 -16.22286 -16.04339 -15.73430 -15.35385 -15.26900 -14.80672 -14.75028 -14.58443 -14.50048 -14.29622 -14.00311 -13.77656 -13.15027 -13.01398 -12.94270 -12.73985 -12.60300 -12.49253 -12.39438 -12.10963 -11.90664 -11.84238 -11.62679 -11.42285 -11.34140 -11.23363 -11.06462 -10.99743 -10.82703 -10.67331 -10.62779 -10.31769 -9.33606 -8.29687 -6.35043 0.71900 0.98403 1.36431 1.38302 1.49698 1.61163 1.78897 2.35863 2.69162 2.92931 3.06645 3.37138 3.64772 3.74344 3.83760 3.89842 3.93158 3.97329 4.06781 4.12166 4.20399 4.26553 4.31456 4.35332 4.39315 4.53681 4.59075 4.66710 4.72997 4.77912 4.86333 4.87994 4.91954 4.94499 5.00681 5.05050 5.08357 5.11113 5.18943 5.31484 5.35386 5.48349 5.53812 5.60969 5.64293 5.66470 5.75844 5.81297 6.24589 6.31392 6.72113 7.30653 7.75997 8.87665 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.023280 B = 0.003446 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.455991 B = 8122.758403 C = 8704.090424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.207 4.207 3 C 0.131 3.869 4 N -0.464 5.464 5 C 0.194 3.806 6 C 0.010 3.990 7 C -0.164 4.164 8 C -0.160 4.160 9 C -0.168 4.168 10 N -0.334 5.334 11 N -0.371 5.371 12 C 0.355 3.645 13 N -0.453 5.453 14 C 0.061 3.939 15 C -0.108 4.108 16 C -0.114 4.114 17 C 0.025 3.975 18 H 0.043 0.957 19 C -0.520 4.520 20 H 0.024 0.976 21 C 0.013 3.987 22 N -0.950 5.950 23 Si 0.947 3.053 24 H -0.272 1.272 25 H -0.287 1.287 26 H -0.233 1.233 27 C 0.108 3.892 28 H 0.117 0.883 29 H 0.124 0.876 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.028 0.972 42 H 0.078 0.922 43 H 0.098 0.902 44 H 0.054 0.946 45 H 0.041 0.959 46 H 0.267 0.733 47 H 0.021 0.979 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.824 -0.139 0.865 32.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.226 4.226 3 C 0.011 3.989 4 N -0.158 5.158 5 C -0.075 4.075 6 C -0.029 4.029 7 C -0.183 4.183 8 C -0.197 4.197 9 C -0.205 4.205 10 N -0.172 5.172 11 N -0.215 5.215 12 C -0.003 4.003 13 N -0.177 5.177 14 C -0.065 4.065 15 C -0.146 4.146 16 C -0.153 4.153 17 C 0.005 3.995 18 H 0.061 0.939 19 C -0.558 4.558 20 H 0.042 0.958 21 C -0.184 4.184 22 N -0.590 5.590 23 Si 0.770 3.230 24 H -0.197 1.197 25 H -0.213 1.213 26 H -0.156 1.156 27 C -0.020 4.020 28 H 0.135 0.865 29 H 0.142 0.858 30 H 0.117 0.883 31 H 0.144 0.856 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.130 0.870 35 H 0.093 0.907 36 H 0.136 0.864 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.129 0.871 40 H 0.122 0.878 41 H 0.047 0.953 42 H 0.096 0.904 43 H 0.116 0.884 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.040 0.960 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -31.746 0.227 1.530 31.784 hybrid contribution 0.747 -0.322 -0.589 1.004 sum -30.999 -0.095 0.941 31.014 Atomic orbital electron populations 1.24175 0.94370 1.04030 0.93641 1.22864 0.97050 0.96501 1.06139 1.21310 0.90831 0.99066 0.87738 1.46400 1.07605 1.51346 1.10450 1.25316 0.98931 1.02559 0.80733 1.19729 0.84971 0.97036 1.01178 1.21944 0.90537 0.98514 1.07355 1.23293 0.97950 1.02567 0.95847 1.23099 0.98023 1.03397 0.96022 1.73874 0.97383 1.19329 1.26646 1.74616 1.25133 1.23072 0.98703 1.22809 0.83769 1.02144 0.91558 1.58852 1.06096 1.28471 1.24306 1.22440 1.01273 0.85371 0.97397 1.21663 0.94249 1.03041 0.95598 1.21792 0.95327 0.97845 1.00295 1.19122 0.92423 0.95100 0.92806 0.93898 1.21146 0.91222 1.42117 1.01358 0.95761 1.25980 0.94693 0.95630 1.02105 1.70073 1.03663 1.48230 1.36992 0.85747 0.79359 0.79532 0.78390 1.19695 1.21309 1.15625 1.21833 0.81807 0.99949 0.98364 0.86467 0.85794 0.88313 0.85611 0.87700 0.87897 0.86980 0.90661 0.86422 0.88658 0.88754 0.87107 0.87772 0.95325 0.90367 0.88383 0.92747 0.93994 0.92439 0.96012 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 11.38 67.78 0.77 0.03 16 2 C -0.21 -2.53 9.10 25.64 0.23 -2.30 16 3 C 0.13 2.05 5.63 85.63 0.48 2.54 16 4 N -0.46 -12.13 2.79 -518.91 -1.45 -13.58 16 5 C 0.19 5.25 7.28 137.64 1.00 6.26 16 6 C 0.01 0.16 5.87 29.85 0.18 0.34 16 7 C -0.16 -2.34 5.72 -10.80 -0.06 -2.40 16 8 C -0.16 -1.26 8.01 30.62 0.25 -1.02 16 9 C -0.17 -1.57 10.25 30.62 0.31 -1.26 16 10 N -0.33 -12.66 12.18 -49.54 -0.60 -13.26 16 11 N -0.37 -15.94 11.40 -58.01 -0.66 -16.60 16 12 C 0.36 12.82 6.98 260.11 1.82 14.64 16 13 N -0.45 -16.41 4.62 -706.16 -3.26 -19.67 16 14 C 0.06 1.81 5.34 86.33 0.46 2.27 16 15 C -0.11 -3.11 6.09 30.65 0.19 -2.92 16 16 C -0.11 -4.56 5.27 30.67 0.16 -4.40 16 17 C 0.02 1.18 1.94 -11.49 -0.02 1.15 16 18 H 0.04 2.00 5.27 -2.39 -0.01 1.98 16 19 C -0.52 -30.57 8.86 25.60 0.23 -30.34 16 20 H 0.02 1.61 8.06 -2.91 -0.02 1.59 16 21 C 0.01 0.77 5.47 84.66 0.46 1.23 16 22 N -0.95 -60.58 13.96 21.45 0.30 -60.29 16 23 Si 0.95 44.22 27.00 68.60 1.85 46.08 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 26 H -0.23 -9.70 6.80 99.48 0.68 -9.02 16 27 C 0.11 4.89 4.10 86.33 0.35 5.25 16 28 H 0.12 0.49 8.06 -2.91 -0.02 0.47 16 29 H 0.12 0.19 7.01 -2.91 -0.02 0.17 16 30 H 0.10 1.55 6.56 -2.91 -0.02 1.53 16 31 H 0.13 1.14 7.13 -2.39 -0.02 1.13 16 32 H 0.10 1.78 8.04 -2.39 -0.02 1.76 16 33 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.11 1.03 7.16 -2.39 -0.02 1.01 16 35 H 0.07 1.57 8.07 -2.38 -0.02 1.55 16 36 H 0.12 0.43 6.42 -2.39 -0.02 0.42 16 37 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.10 2.36 4.67 -2.39 -0.01 2.35 16 41 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 45 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.27 15.85 8.31 -92.71 -0.77 15.07 16 47 H 0.02 1.07 8.13 -2.39 -0.02 1.05 16 48 H 0.05 2.54 8.09 -2.39 -0.02 2.52 16 Total: -1.00 -79.78 374.50 3.90 -75.88 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.91 Total: 12.38 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: 6.81 Total: -10.94 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -5.67 Total: -123.40 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.85 Total: 46.08 kcal Total: -79.78 3.90 -75.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597287640.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.563 kcal (2) G-P(sol) polarization free energy of solvation -79.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds