Wall clock time and date at job start Tue Mar 31 2020 11:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00099 * 2 1 4 4 C 1.50704 * 120.00056 * 179.97438 * 2 1 3 5 5 N 1.46500 * 109.46572 * 95.59831 * 4 2 1 6 6 C 1.36733 * 127.14044 * 268.46813 * 5 4 2 7 7 C 1.50704 * 126.34751 * 359.97438 * 6 5 4 8 8 C 1.52990 * 117.50046 * 188.61993 * 7 6 5 9 9 C 1.52996 * 117.49713 * 119.99441 * 7 6 5 10 10 N 1.30292 * 107.30577 * 180.24397 * 6 5 4 11 11 N 1.28526 * 110.05469 * 359.56150 * 10 6 5 12 12 C 1.31217 * 109.85999 * 0.44967 * 11 10 6 13 13 N 1.38576 * 126.47277 * 179.69248 * 12 11 10 14 14 C 1.46855 * 111.00072 * 254.80115 * 13 12 11 15 15 C 1.53038 * 109.52298 * 185.83866 * 14 13 12 16 16 C 1.53112 * 109.27889 * 300.82387 * 15 14 13 17 17 C 1.53122 * 109.16229 * 57.65481 * 16 15 14 18 18 H 1.09000 * 109.50105 * 62.32499 * 17 16 15 19 19 C 1.50701 * 109.50379 * 182.40295 * 17 16 15 20 20 H 1.08000 * 120.00098 * 119.99877 * 19 17 16 21 21 C 1.37879 * 120.00171 * 299.99872 * 19 17 16 22 22 N 1.31509 * 120.00479 * 179.97438 * 21 19 17 23 23 Si 1.86807 * 119.99863 * 0.02562 * 21 19 17 24 24 H 1.48496 * 109.47256 * 89.99729 * 23 21 19 25 25 H 1.48496 * 109.47124 * 210.00123 * 23 21 19 26 26 H 1.48500 * 109.47010 * 330.00049 * 23 21 19 27 27 C 1.46847 * 111.00357 * 19.01393 * 13 12 11 28 28 H 1.08001 * 119.99861 * 355.11178 * 1 2 3 29 29 H 1.07994 * 120.00038 * 175.11831 * 1 2 3 30 30 H 1.08998 * 109.47100 * 269.99787 * 3 2 1 31 31 H 1.09003 * 109.47144 * 30.00215 * 3 2 1 32 32 H 1.08999 * 109.47419 * 149.99492 * 3 2 1 33 33 H 1.09001 * 109.46846 * 335.60355 * 4 2 1 34 34 H 1.08994 * 109.47432 * 215.59833 * 4 2 1 35 35 H 1.09003 * 115.56204 * 334.31338 * 7 6 5 36 36 H 1.08998 * 117.50305 * 0.02562 * 8 7 6 37 37 H 1.09000 * 117.49802 * 145.02164 * 8 7 6 38 38 H 1.09003 * 117.50207 * 214.97885 * 9 7 6 39 39 H 1.08996 * 117.50326 * 0.02562 * 9 7 6 40 40 H 1.08995 * 109.45954 * 305.86139 * 14 13 12 41 41 H 1.09003 * 109.45603 * 65.83549 * 14 13 12 42 42 H 1.09000 * 109.49975 * 60.76728 * 15 14 13 43 43 H 1.08994 * 109.50029 * 180.88176 * 15 14 13 44 44 H 1.09002 * 109.52007 * 177.55936 * 16 15 14 45 45 H 1.08995 * 109.52637 * 297.68441 * 16 15 14 46 46 H 0.96999 * 120.00626 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.46169 * 294.17625 * 27 13 12 48 48 H 1.08995 * 109.45750 * 54.14188 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4243 -1.6612 -1.3739 6 6 1.7014 -2.4283 -2.2449 7 6 0.3684 -3.0756 -1.9706 8 6 -0.1690 -4.0562 -3.0148 9 6 -0.8084 -2.6746 -2.8622 10 7 2.3814 -2.5007 -3.3539 11 7 3.4720 -1.8291 -3.2469 12 6 3.5514 -1.2956 -2.0508 13 7 4.5850 -0.5101 -1.5661 14 6 5.4227 -1.2645 -0.6250 15 6 6.4614 -0.3293 -0.0017 16 6 7.3257 0.2770 -1.1105 17 6 6.4241 1.0162 -2.1032 18 1 5.9165 1.8352 -1.5936 19 6 7.2607 1.5660 -3.2297 20 1 7.0696 1.2546 -4.2460 21 6 8.2700 2.4666 -2.9629 22 7 9.0004 2.9460 -3.9458 23 14 8.6011 3.0047 -1.2049 24 1 9.5924 2.0889 -0.5853 25 1 9.1379 4.3892 -1.2038 26 1 7.3362 2.9635 -0.4281 27 6 5.3867 0.0420 -2.6657 28 1 -0.5400 0.9319 0.0797 29 1 -0.5400 -0.9319 -0.0796 30 1 2.2452 1.6197 -1.0276 31 1 1.4744 2.0648 0.5139 32 1 3.0159 1.1748 0.5139 33 1 1.4346 -2.0875 0.4254 34 1 2.9688 -1.2018 0.5987 35 1 0.1561 -3.2895 -0.9230 36 1 0.4417 -4.2335 -3.9000 37 1 -0.7348 -4.9152 -2.6543 38 1 -1.7950 -2.6248 -2.4014 39 1 -0.6185 -1.9430 -3.6475 40 1 4.7963 -1.6869 0.1606 41 1 5.9312 -2.0693 -1.1561 42 1 5.9537 0.4681 0.5412 43 1 7.0929 -0.8929 0.6850 44 1 8.0387 0.9771 -0.6749 45 1 7.8645 -0.5169 -1.6277 46 1 9.7108 3.5793 -3.7581 47 1 5.8952 -0.7690 -3.1871 48 1 4.7341 0.5685 -3.3620 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597305144.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:38 Heat of formation + Delta-G solvation = 133.250583 kcal Electronic energy + Delta-G solvation = -27703.895356 eV Core-core repulsion = 24182.765228 eV Total energy + Delta-G solvation = -3521.130128 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.85846 -38.69335 -37.30384 -36.91987 -34.05690 -33.31163 -32.18242 -30.46297 -29.01910 -27.59997 -27.05660 -25.16798 -24.23507 -23.99956 -22.59721 -21.61659 -20.93647 -20.27582 -18.97128 -18.78062 -17.40265 -16.86318 -16.22415 -16.08830 -15.66054 -14.98215 -14.78572 -14.65808 -14.21884 -14.19160 -13.84136 -13.35293 -13.16512 -12.97868 -12.68651 -12.55033 -12.35262 -12.14551 -11.96306 -11.76088 -11.62686 -11.37940 -11.26901 -11.17943 -11.11152 -10.81592 -10.67371 -10.30370 -10.20978 -10.10944 -9.97635 -9.79754 -9.42854 -9.27365 -9.22711 -8.94739 -8.54072 -7.95936 -6.07319 -4.07195 1.60863 1.87066 2.55790 2.95121 3.25224 3.36043 3.38693 3.69817 3.96476 4.18395 4.29473 4.39730 4.43702 4.58197 4.62518 4.76190 4.91182 4.99634 5.13305 5.21494 5.26923 5.35661 5.40865 5.44430 5.53535 5.62728 5.62999 5.66395 5.72584 5.77556 5.92795 5.95491 5.98689 6.02597 6.06813 6.11633 6.22698 6.29296 6.35050 6.53855 6.57361 6.60291 6.69429 6.81695 7.05215 7.15277 7.50740 7.57161 7.76262 8.50884 8.97066 8.98616 9.53820 11.05872 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.019042 B = 0.003898 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.084327 B = 7181.784293 C = 7753.332682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.139 4.139 3 C -0.114 4.114 4 C 0.148 3.852 5 N -0.471 5.471 6 C 0.195 3.805 7 C -0.080 4.080 8 C -0.150 4.150 9 C -0.158 4.158 10 N -0.283 5.283 11 N -0.317 5.317 12 C 0.373 3.627 13 N -0.459 5.459 14 C 0.067 3.933 15 C -0.118 4.118 16 C -0.126 4.126 17 C 0.022 3.978 18 H 0.036 0.964 19 C -0.514 4.514 20 H 0.076 0.924 21 C 0.072 3.928 22 N -0.899 5.899 23 Si 0.887 3.113 24 H -0.279 1.279 25 H -0.298 1.298 26 H -0.264 1.264 27 C 0.094 3.906 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.062 0.938 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.061 0.939 46 H 0.264 0.736 47 H 0.050 0.950 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.916 -10.657 12.537 25.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.140 4.140 3 C -0.171 4.171 4 C 0.025 3.975 5 N -0.165 5.165 6 C -0.071 4.071 7 C -0.101 4.101 8 C -0.188 4.188 9 C -0.196 4.196 10 N -0.123 5.123 11 N -0.161 5.161 12 C 0.017 3.983 13 N -0.184 5.184 14 C -0.060 4.060 15 C -0.156 4.156 16 C -0.163 4.163 17 C 0.003 3.997 18 H 0.054 0.946 19 C -0.552 4.552 20 H 0.094 0.906 21 C -0.130 4.130 22 N -0.537 5.537 23 Si 0.717 3.283 24 H -0.207 1.207 25 H -0.226 1.226 26 H -0.189 1.189 27 C -0.031 4.031 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.120 0.880 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.521 -10.501 11.334 24.120 hybrid contribution 0.359 0.225 1.960 2.005 sum -18.162 -10.277 13.293 24.742 Atomic orbital electron populations 1.23792 0.94984 1.02282 0.99799 1.21897 0.95465 0.95610 1.00995 1.20811 1.00024 0.93114 1.03116 1.20902 1.01215 0.95282 0.80057 1.46155 1.16285 1.40510 1.13565 1.23509 0.96907 0.98897 0.87828 1.19956 0.87657 1.04846 0.97633 1.23011 1.02421 0.92959 1.00435 1.23052 0.95554 0.99175 1.01838 1.73914 1.01542 1.17452 1.19363 1.74748 1.13810 1.11928 1.15594 1.22770 0.89673 0.96526 0.89311 1.58888 1.10445 1.29665 1.19376 1.22147 0.94272 0.95360 0.94200 1.21677 0.96680 0.98573 0.98630 1.22090 0.98308 0.99871 0.96072 1.19208 0.92233 0.93252 0.95025 0.94574 1.20932 1.15243 1.25057 0.93963 0.90604 1.24966 0.95593 0.95569 0.96834 1.69891 1.20935 1.31348 1.31527 0.86853 0.78834 0.76826 0.85780 1.20658 1.22572 1.18896 1.22138 0.94177 0.97630 0.89193 0.87788 0.88375 0.90818 0.92005 0.91145 0.88799 0.87992 0.86472 0.87166 0.88056 0.88049 0.88163 0.91966 0.93578 0.91500 0.91901 0.93096 0.92012 0.92622 0.93139 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 13.88 29.02 0.40 -1.04 16 2 C -0.14 -1.41 5.63 -101.06 -0.57 -1.98 16 3 C -0.11 -1.30 10.03 36.01 0.36 -0.94 16 4 C 0.15 1.51 6.16 -5.19 -0.03 1.48 16 5 N -0.47 -6.57 2.79 -115.37 -0.32 -6.89 16 6 C 0.20 2.78 7.59 -154.02 -1.17 1.61 16 7 C -0.08 -0.78 5.99 -91.78 -0.55 -1.33 16 8 C -0.15 -1.30 10.15 -26.74 -0.27 -1.57 16 9 C -0.16 -1.33 10.23 -26.73 -0.27 -1.60 16 10 N -0.28 -5.09 11.79 32.99 0.39 -4.70 16 11 N -0.32 -6.32 11.46 30.31 0.35 -5.98 16 12 C 0.37 6.50 6.89 -318.87 -2.20 4.31 16 13 N -0.46 -8.00 4.67 -174.55 -0.82 -8.81 16 14 C 0.07 1.03 5.31 -3.83 -0.02 1.01 16 15 C -0.12 -1.87 6.09 -26.65 -0.16 -2.03 16 16 C -0.13 -2.58 4.73 -26.61 -0.13 -2.70 16 17 C 0.02 0.51 1.85 -91.69 -0.17 0.34 16 18 H 0.04 0.85 7.21 -51.93 -0.37 0.48 16 19 C -0.51 -14.25 9.15 -34.44 -0.31 -14.56 16 20 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 21 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 22 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 23 Si 0.89 21.48 24.35 -169.99 -4.14 17.34 16 24 H -0.28 -6.57 6.89 56.52 0.39 -6.18 16 25 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.26 -6.05 6.53 56.52 0.37 -5.68 16 27 C 0.09 1.97 4.11 -3.84 -0.02 1.96 16 28 H 0.10 0.81 8.02 -52.49 -0.42 0.38 16 29 H 0.10 0.69 8.02 -52.49 -0.42 0.27 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.60 8.04 -51.93 -0.42 0.18 16 32 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 33 H 0.09 0.70 7.25 -51.93 -0.38 0.33 16 34 H 0.10 1.01 6.33 -51.93 -0.33 0.68 16 35 H 0.12 0.84 7.51 -51.93 -0.39 0.45 16 36 H 0.11 1.17 7.92 -51.93 -0.41 0.75 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.79 6.40 -51.93 -0.33 0.46 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.05 1.10 3.34 -51.93 -0.17 0.93 16 45 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.05 1.13 8.10 -51.93 -0.42 0.71 16 48 H 0.08 1.70 8.10 -51.93 -0.42 1.28 16 LS Contribution 378.53 15.07 5.70 5.70 Total: -1.00 -32.45 378.53 -11.15 -43.60 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.89 Total: 1.47 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -5.20 Total: -15.10 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.37 Total: -53.01 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.14 Total: 17.34 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.45 -11.15 -43.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597305144.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.852 kcal (2) G-P(sol) polarization free energy of solvation -32.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds