Wall clock time and date at job start Tue Mar 31 2020 10:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 120.00040 * 2 1 4 4 H 1.48500 * 109.47144 * 240.00231 * 3 2 1 5 5 H 1.48502 * 109.46799 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46894 * 119.99988 * 3 2 1 7 7 C 1.37878 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99871 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99840 * 0.02562 * 7 2 1 10 10 C 1.53113 * 109.52293 * 299.67839 * 9 7 2 11 11 C 1.53033 * 109.27990 * 182.44589 * 10 9 7 12 12 N 1.46847 * 109.52417 * 59.17837 * 11 10 9 13 13 C 1.38576 * 110.99695 * 174.15979 * 12 11 10 14 14 N 1.31224 * 126.47513 * 35.75516 * 13 12 11 15 15 N 1.28527 * 109.86075 * 179.81850 * 14 13 12 16 16 C 1.30297 * 110.05483 * 0.45016 * 15 14 13 17 17 C 1.50697 * 126.34806 * 179.76550 * 16 15 14 18 18 C 1.53004 * 117.50093 * 8.70505 * 17 16 15 19 19 C 1.52999 * 117.49749 * 300.04430 * 17 16 15 20 20 N 1.36460 * 126.47569 * 216.05956 * 13 12 11 21 21 C 1.46502 * 127.13085 * 359.97438 * 20 13 12 22 22 C 1.52999 * 109.46765 * 93.68227 * 21 20 13 23 23 C 1.52999 * 117.49419 * 243.61664 * 22 21 20 24 24 C 1.53001 * 60.00374 * 252.51538 * 23 22 21 25 25 C 1.46845 * 111.19921 * 298.25907 * 12 11 10 26 26 C 1.53038 * 109.52123 * 61.74101 * 25 12 11 27 27 H 0.96991 * 119.99694 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.57612 * 59.84230 * 9 7 2 29 29 H 1.09000 * 109.50171 * 62.49945 * 10 9 7 30 30 H 1.09006 * 109.50356 * 302.38695 * 10 9 7 31 31 H 1.09003 * 109.46087 * 299.16491 * 11 10 9 32 32 H 1.09003 * 109.46342 * 179.19647 * 11 10 9 33 33 H 1.08995 * 115.54966 * 154.37784 * 17 16 15 34 34 H 1.09001 * 117.49662 * 359.97438 * 18 17 16 35 35 H 1.08989 * 117.50310 * 145.02297 * 18 17 16 36 36 H 1.09005 * 117.50242 * 214.98039 * 19 17 16 37 37 H 1.09001 * 117.49919 * 359.97438 * 19 17 16 38 38 H 1.09002 * 109.46445 * 213.68225 * 21 20 13 39 39 H 1.08997 * 109.47526 * 333.68060 * 21 20 13 40 40 H 1.08993 * 115.55200 * 29.32814 * 22 21 20 41 41 H 1.09001 * 117.50319 * 359.97438 * 23 22 21 42 42 H 1.09004 * 117.49851 * 145.02938 * 23 22 21 43 43 H 1.09005 * 117.49890 * 252.51809 * 24 23 22 44 44 H 1.09002 * 117.50249 * 107.48909 * 24 23 22 45 45 H 1.08993 * 109.46019 * 181.75953 * 25 12 11 46 46 H 1.09002 * 109.46205 * 301.72713 * 25 12 11 47 47 H 1.09000 * 109.50217 * 60.76101 * 26 25 12 48 48 H 1.08998 * 109.50324 * 180.87923 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 0.3759 -2.5858 1.2517 11 6 -0.3397 -3.9383 1.2758 12 7 0.6541 -5.0194 1.2751 13 6 0.0444 -6.2544 1.4282 14 7 -1.1181 -6.6165 0.9389 15 7 -1.3730 -7.8313 1.2722 16 6 -0.4007 -8.3094 1.9960 17 6 -0.3233 -9.6942 2.5852 18 6 -1.3855 -10.7067 2.1522 19 6 -1.4262 -10.1094 3.5610 20 7 0.5368 -7.3219 2.1212 21 6 1.8068 -7.3948 2.8478 22 6 1.5750 -7.0360 4.3169 23 6 2.2666 -5.7818 4.8552 24 6 2.7631 -7.1677 5.2721 25 6 1.4752 -4.9851 0.0582 26 6 2.2451 -3.6638 -0.0021 27 1 -0.4849 0.8400 0.0004 28 1 0.6219 -2.5568 -0.8900 29 1 -0.3621 -1.7838 1.2364 30 1 1.0010 -2.4890 2.1394 31 1 -0.9752 -4.0287 0.3948 32 1 -0.9527 -4.0089 2.1744 33 1 0.6826 -10.0695 2.7733 34 1 -2.1406 -10.3709 1.4414 35 1 -1.0787 -11.7480 2.0557 36 1 -1.1460 -10.7582 4.3909 37 1 -2.2075 -9.3807 3.7771 38 1 2.2067 -8.4065 2.7795 39 1 2.5168 -6.6932 2.4100 40 1 0.5858 -7.2730 4.7084 41 1 2.8869 -5.2127 4.1629 42 1 1.7322 -5.1933 5.6011 43 1 2.5552 -7.4910 6.2922 44 1 3.7096 -7.5101 4.8539 45 1 2.1805 -5.8160 0.0725 46 1 0.8312 -5.0705 -0.8170 47 1 2.8995 -3.5840 0.8658 48 1 2.8425 -3.6320 -0.9133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597398784.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:25 Heat of formation + Delta-G solvation = 131.583801 kcal Electronic energy + Delta-G solvation = -27267.400343 eV Core-core repulsion = 23746.197938 eV Total energy + Delta-G solvation = -3521.202405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.82401 -38.40295 -37.86116 -37.21224 -34.35407 -33.86904 -31.51045 -29.95496 -28.96919 -27.71260 -25.70723 -24.13254 -22.72640 -22.54952 -22.50648 -22.19902 -21.46218 -20.53472 -19.94791 -18.53575 -17.49855 -16.55047 -16.26224 -16.05880 -15.77290 -14.98585 -14.67388 -14.56266 -14.42511 -14.02842 -13.59680 -13.26522 -12.81609 -12.62519 -12.46448 -12.36592 -12.11786 -11.75637 -11.67632 -11.63902 -11.37798 -11.18064 -11.03615 -10.87915 -10.80672 -10.69135 -10.60599 -10.38933 -10.30288 -10.16523 -10.14487 -9.92429 -9.52582 -9.09312 -8.97752 -8.72397 -8.32393 -8.04633 -5.98936 -4.05009 1.81979 2.31684 2.94733 3.31707 3.37093 3.38939 3.54535 3.70373 4.06394 4.12795 4.40601 4.43572 4.52018 4.62424 4.65253 4.77005 4.79365 4.95939 5.01350 5.27728 5.30780 5.32054 5.40870 5.42316 5.44669 5.61358 5.68078 5.77058 5.80666 5.88543 5.92867 5.95856 6.01554 6.02512 6.08311 6.21123 6.26941 6.48324 6.50225 6.71229 6.76743 6.91771 7.05023 7.34944 7.40617 7.65772 7.75576 7.98651 8.09871 8.43335 8.96224 8.98133 9.59670 11.07341 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018972 B = 0.003433 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.472742 B = 8154.994655 C = 9002.588844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.103 4.103 11 C 0.074 3.926 12 N -0.459 5.459 13 C 0.370 3.630 14 N -0.318 5.318 15 N -0.287 5.287 16 C 0.195 3.805 17 C -0.079 4.079 18 C -0.151 4.151 19 C -0.159 4.159 20 N -0.465 5.465 21 C 0.147 3.853 22 C -0.172 4.172 23 C -0.162 4.162 24 C -0.172 4.172 25 C 0.069 3.931 26 C -0.104 4.104 27 H 0.261 0.739 28 H 0.025 0.975 29 H 0.100 0.900 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.055 0.945 46 H 0.042 0.958 47 H 0.058 0.942 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.597 -19.711 9.622 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.142 4.142 11 C -0.052 4.052 12 N -0.185 5.185 13 C 0.014 3.986 14 N -0.162 5.162 15 N -0.127 5.127 16 C -0.072 4.072 17 C -0.100 4.100 18 C -0.188 4.188 19 C -0.198 4.198 20 N -0.158 5.158 21 C 0.024 3.976 22 C -0.191 4.191 23 C -0.199 4.199 24 C -0.210 4.210 25 C -0.058 4.058 26 C -0.142 4.142 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.118 0.882 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.138 0.862 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.073 0.927 46 H 0.060 0.940 47 H 0.077 0.923 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.464 -19.376 9.241 21.608 hybrid contribution 1.268 0.833 0.185 1.529 sum 3.732 -18.543 9.426 21.133 Atomic orbital electron populations 1.69852 1.05845 1.26570 1.50568 1.24966 0.94832 0.99007 0.95110 0.86694 0.79618 0.83338 0.78532 1.20370 1.21351 1.20343 1.21108 0.92789 0.90502 1.50712 0.92754 1.18704 0.92627 0.91644 0.94153 1.21745 1.00428 0.92450 0.99531 1.22309 0.91967 0.90328 1.00570 1.58931 1.23749 0.96835 1.38996 1.22786 0.91623 0.89056 0.95153 1.74711 1.13571 1.05870 1.22040 1.73909 1.21983 1.03545 1.13235 1.23555 0.88262 0.92435 1.02920 1.19974 0.96855 0.87904 1.05278 1.23022 1.00474 0.97121 0.98232 1.23063 0.99957 1.03316 0.93415 1.46150 1.18234 1.11564 1.39878 1.21361 0.82900 1.03339 0.90025 1.22486 0.98250 1.05047 0.93299 1.23065 1.02958 0.90417 1.03439 1.22968 0.97410 1.01260 0.99339 1.22253 0.95248 0.99898 0.88415 1.21718 0.98704 0.92988 1.00777 0.92908 0.95659 0.88205 0.93663 0.93494 0.92330 0.86237 0.87208 0.88022 0.88020 0.88249 0.89153 0.87973 0.87563 0.87779 0.88611 0.88577 0.88564 0.92665 0.93971 0.92278 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.01 11.37 55.43 0.63 -24.38 16 2 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 3 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.51 -13.65 8.56 -34.44 -0.29 -13.94 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.05 1.14 2.16 -91.65 -0.20 0.94 16 10 C -0.10 -2.38 5.12 -26.66 -0.14 -2.51 16 11 C 0.07 1.53 5.09 -3.84 -0.02 1.51 16 12 N -0.46 -8.42 4.67 -174.55 -0.81 -9.24 16 13 C 0.37 6.63 6.72 -318.86 -2.14 4.49 16 14 N -0.32 -6.35 11.69 30.32 0.35 -6.00 16 15 N -0.29 -5.15 11.79 32.99 0.39 -4.76 16 16 C 0.20 2.81 7.59 -154.02 -1.17 1.64 16 17 C -0.08 -0.79 6.00 -91.77 -0.55 -1.34 16 18 C -0.15 -1.31 10.15 -26.69 -0.27 -1.58 16 19 C -0.16 -1.35 10.24 -26.69 -0.27 -1.62 16 20 N -0.47 -6.71 2.81 -114.08 -0.32 -7.04 16 21 C 0.15 1.58 6.27 -4.04 -0.03 1.56 16 22 C -0.17 -1.74 6.01 -90.62 -0.54 -2.29 16 23 C -0.16 -1.68 10.18 -26.73 -0.27 -1.96 16 24 C -0.17 -1.37 10.25 -26.73 -0.27 -1.64 16 25 C 0.07 1.24 5.40 -3.83 -0.02 1.22 16 26 C -0.10 -2.06 5.32 -26.65 -0.14 -2.20 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.10 2.58 6.17 -51.93 -0.32 2.26 16 30 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 1.04 8.06 -51.93 -0.42 0.62 16 32 H 0.06 1.19 8.10 -51.93 -0.42 0.76 16 33 H 0.12 0.91 7.63 -51.93 -0.40 0.51 16 34 H 0.11 1.16 7.92 -51.93 -0.41 0.75 16 35 H 0.10 0.64 8.14 -51.94 -0.42 0.22 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 0.73 7.57 -51.93 -0.39 0.34 16 39 H 0.10 1.15 7.87 -51.93 -0.41 0.75 16 40 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.10 1.17 8.03 -51.93 -0.42 0.75 16 42 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 46 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 386.76 15.07 5.83 5.83 Total: -1.00 -30.25 386.76 -13.60 -43.85 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -8.22 Total: 1.94 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -6.43 Total: -16.14 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 0.24 Total: -51.41 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.25 -13.60 -43.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597398784.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.433 kcal (2) G-P(sol) polarization free energy of solvation -30.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds