Wall clock time and date at job start Tue Mar 31 2020 10:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 120.00040 * 2 1 4 4 H 1.48500 * 109.47144 * 240.00231 * 3 2 1 5 5 H 1.48502 * 109.46799 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46894 * 119.99988 * 3 2 1 7 7 C 1.37878 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99871 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99840 * 0.02562 * 7 2 1 10 10 C 1.53113 * 109.52293 * 299.67839 * 9 7 2 11 11 C 1.53033 * 109.27990 * 182.44589 * 10 9 7 12 12 N 1.46847 * 109.52417 * 59.17837 * 11 10 9 13 13 C 1.38576 * 110.99695 * 174.15979 * 12 11 10 14 14 N 1.31224 * 126.47513 * 35.75516 * 13 12 11 15 15 N 1.28527 * 109.86075 * 179.81850 * 14 13 12 16 16 C 1.30297 * 110.05483 * 0.45016 * 15 14 13 17 17 C 1.50697 * 126.34806 * 179.76550 * 16 15 14 18 18 C 1.53004 * 117.50093 * 8.70505 * 17 16 15 19 19 C 1.52999 * 117.49749 * 300.04430 * 17 16 15 20 20 N 1.36460 * 126.47569 * 216.05956 * 13 12 11 21 21 C 1.46502 * 127.13085 * 359.97438 * 20 13 12 22 22 C 1.52999 * 109.46765 * 93.68227 * 21 20 13 23 23 C 1.52999 * 117.49419 * 243.61664 * 22 21 20 24 24 C 1.53001 * 60.00374 * 252.51538 * 23 22 21 25 25 C 1.46845 * 111.19921 * 298.25907 * 12 11 10 26 26 C 1.53038 * 109.52123 * 61.74101 * 25 12 11 27 27 H 0.96991 * 119.99694 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.57612 * 59.84230 * 9 7 2 29 29 H 1.09000 * 109.50171 * 62.49945 * 10 9 7 30 30 H 1.09006 * 109.50356 * 302.38695 * 10 9 7 31 31 H 1.09003 * 109.46087 * 299.16491 * 11 10 9 32 32 H 1.09003 * 109.46342 * 179.19647 * 11 10 9 33 33 H 1.08995 * 115.54966 * 154.37784 * 17 16 15 34 34 H 1.09001 * 117.49662 * 359.97438 * 18 17 16 35 35 H 1.08989 * 117.50310 * 145.02297 * 18 17 16 36 36 H 1.09005 * 117.50242 * 214.98039 * 19 17 16 37 37 H 1.09001 * 117.49919 * 359.97438 * 19 17 16 38 38 H 1.09002 * 109.46445 * 213.68225 * 21 20 13 39 39 H 1.08997 * 109.47526 * 333.68060 * 21 20 13 40 40 H 1.08993 * 115.55200 * 29.32814 * 22 21 20 41 41 H 1.09001 * 117.50319 * 359.97438 * 23 22 21 42 42 H 1.09004 * 117.49851 * 145.02938 * 23 22 21 43 43 H 1.09005 * 117.49890 * 252.51809 * 24 23 22 44 44 H 1.09002 * 117.50249 * 107.48909 * 24 23 22 45 45 H 1.08993 * 109.46019 * 181.75953 * 25 12 11 46 46 H 1.09002 * 109.46205 * 301.72713 * 25 12 11 47 47 H 1.09000 * 109.50217 * 60.76101 * 26 25 12 48 48 H 1.08998 * 109.50324 * 180.87923 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 0.3759 -2.5858 1.2517 11 6 -0.3397 -3.9383 1.2758 12 7 0.6541 -5.0194 1.2751 13 6 0.0444 -6.2544 1.4282 14 7 -1.1181 -6.6165 0.9389 15 7 -1.3730 -7.8313 1.2722 16 6 -0.4007 -8.3094 1.9960 17 6 -0.3233 -9.6942 2.5852 18 6 -1.3855 -10.7067 2.1522 19 6 -1.4262 -10.1094 3.5610 20 7 0.5368 -7.3219 2.1212 21 6 1.8068 -7.3948 2.8478 22 6 1.5750 -7.0360 4.3169 23 6 2.2666 -5.7818 4.8552 24 6 2.7631 -7.1677 5.2721 25 6 1.4752 -4.9851 0.0582 26 6 2.2451 -3.6638 -0.0021 27 1 -0.4849 0.8400 0.0004 28 1 0.6219 -2.5568 -0.8900 29 1 -0.3621 -1.7838 1.2364 30 1 1.0010 -2.4890 2.1394 31 1 -0.9752 -4.0287 0.3948 32 1 -0.9527 -4.0089 2.1744 33 1 0.6826 -10.0695 2.7733 34 1 -2.1406 -10.3709 1.4414 35 1 -1.0787 -11.7480 2.0557 36 1 -1.1460 -10.7582 4.3909 37 1 -2.2075 -9.3807 3.7771 38 1 2.2067 -8.4065 2.7795 39 1 2.5168 -6.6932 2.4100 40 1 0.5858 -7.2730 4.7084 41 1 2.8869 -5.2127 4.1629 42 1 1.7322 -5.1933 5.6011 43 1 2.5552 -7.4910 6.2922 44 1 3.7096 -7.5101 4.8539 45 1 2.1805 -5.8160 0.0725 46 1 0.8312 -5.0705 -0.8170 47 1 2.8995 -3.5840 0.8658 48 1 2.8425 -3.6320 -0.9133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597398784.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:25 Heat of formation + Delta-G solvation = 118.442141 kcal Electronic energy + Delta-G solvation = -27267.970208 eV Core-core repulsion = 23746.197938 eV Total energy + Delta-G solvation = -3521.772270 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.07535 -39.98905 -38.66554 -38.02051 -35.89288 -35.25522 -33.35402 -31.68061 -30.36028 -28.71561 -27.54488 -25.18058 -24.37682 -23.86693 -23.25602 -23.21595 -22.49650 -21.78028 -21.01710 -20.22454 -18.63587 -18.41008 -17.50079 -17.32107 -16.82488 -16.51612 -15.88699 -15.71140 -15.41456 -15.23140 -15.04711 -14.66541 -14.41303 -14.23429 -14.13071 -13.37211 -13.22366 -12.99550 -12.90854 -12.76068 -12.66800 -12.48986 -12.36343 -12.35182 -12.21451 -12.01325 -11.98342 -11.69134 -11.52970 -11.44218 -11.31541 -11.00955 -10.96838 -10.90775 -10.76301 -10.40187 -10.24009 -9.49689 -8.06711 -6.20412 0.62736 1.17208 1.44149 1.44895 1.52480 1.67660 2.45206 2.63424 2.86531 2.95344 3.20938 3.23869 3.54248 3.74062 3.84487 3.86375 3.95272 4.01228 4.08489 4.09741 4.10959 4.19388 4.24396 4.40119 4.46025 4.49347 4.54329 4.64951 4.72335 4.81117 4.82697 4.84161 4.93383 4.96936 4.98926 5.04755 5.15137 5.19007 5.20142 5.20820 5.27447 5.31026 5.47494 5.58412 5.65665 5.72869 5.98155 6.12285 6.27028 6.37892 6.90997 7.47932 7.67662 8.98208 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018972 B = 0.003433 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.472742 B = 8154.994655 C = 9002.588844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.012 3.988 3 Si 0.953 3.047 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.044 3.956 10 C -0.088 4.088 11 C 0.092 3.908 12 N -0.447 5.447 13 C 0.352 3.648 14 N -0.360 5.360 15 N -0.328 5.328 16 C 0.215 3.785 17 C -0.092 4.092 18 C -0.147 4.147 19 C -0.147 4.147 20 N -0.457 5.457 21 C 0.141 3.859 22 C -0.177 4.177 23 C -0.187 4.187 24 C -0.137 4.137 25 C 0.076 3.924 26 C -0.092 4.092 27 H 0.260 0.740 28 H -0.012 1.012 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.023 0.977 32 H 0.058 0.942 33 H 0.156 0.844 34 H 0.083 0.917 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.076 0.924 38 H 0.128 0.872 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.088 0.912 46 H 0.023 0.977 47 H 0.067 0.933 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.248 -22.466 11.345 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.567 4.567 8 H 0.077 0.923 9 C 0.025 3.975 10 C -0.127 4.127 11 C -0.035 4.035 12 N -0.173 5.173 13 C -0.006 4.006 14 N -0.203 5.203 15 N -0.167 5.167 16 C -0.053 4.053 17 C -0.113 4.113 18 C -0.185 4.185 19 C -0.185 4.185 20 N -0.149 5.149 21 C 0.019 3.981 22 C -0.196 4.196 23 C -0.224 4.224 24 C -0.174 4.174 25 C -0.051 4.051 26 C -0.130 4.130 27 H 0.069 0.931 28 H 0.006 0.994 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.173 0.827 34 H 0.102 0.898 35 H 0.152 0.848 36 H 0.154 0.846 37 H 0.094 0.906 38 H 0.146 0.854 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.129 0.871 44 H 0.134 0.866 45 H 0.106 0.894 46 H 0.042 0.958 47 H 0.086 0.914 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.137 -22.150 10.974 25.248 hybrid contribution 0.399 1.608 -0.323 1.688 sum 5.535 -20.542 10.651 23.792 Atomic orbital electron populations 1.70016 1.07290 1.27151 1.51411 1.25761 0.95589 1.02448 0.94884 0.85683 0.78362 0.79149 0.78877 1.19694 1.21428 1.19412 1.21495 0.93173 0.91672 1.50359 0.92344 1.18668 0.93098 0.92960 0.92776 1.21454 0.99427 0.92843 0.98970 1.21926 0.91896 0.90256 0.99446 1.58855 1.22724 0.96767 1.38955 1.22622 0.91872 0.89514 0.96574 1.74590 1.14959 1.07275 1.23508 1.73835 1.24083 1.03164 1.15661 1.24470 0.86718 0.93720 1.00355 1.20383 0.99187 0.85476 1.06208 1.23095 0.99216 0.98347 0.97799 1.23121 0.98300 1.02814 0.94289 1.46325 1.19251 1.10185 1.39157 1.21736 0.81061 1.05532 0.89727 1.22387 0.98704 1.05139 0.93408 1.23059 1.03955 0.91534 1.03823 1.23067 0.96917 0.97989 0.99435 1.22184 0.95229 0.99999 0.87684 1.21543 0.97794 0.92035 1.01608 0.93130 0.99414 0.91457 0.93839 0.95814 0.92339 0.82695 0.89803 0.84770 0.84610 0.90578 0.85375 0.88310 0.88818 0.88892 0.89571 0.87128 0.86557 0.89363 0.95844 0.91396 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.61 11.37 21.45 0.24 -53.37 16 2 C 0.01 0.64 5.31 84.65 0.45 1.09 16 3 Si 0.95 43.38 29.54 68.60 2.03 45.40 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.53 -28.64 8.56 25.60 0.22 -28.42 16 8 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.04 2.17 2.16 -11.46 -0.02 2.15 16 10 C -0.09 -4.28 5.12 30.64 0.16 -4.12 16 11 C 0.09 3.99 5.09 86.32 0.44 4.43 16 12 N -0.45 -16.65 4.67 -706.16 -3.30 -19.95 16 13 C 0.35 12.69 6.72 260.11 1.75 14.44 16 14 N -0.36 -14.86 11.69 -58.00 -0.68 -15.53 16 15 N -0.33 -11.97 11.79 -49.54 -0.58 -12.55 16 16 C 0.22 5.92 7.59 137.64 1.04 6.96 16 17 C -0.09 -1.51 6.00 -11.54 -0.07 -1.58 16 18 C -0.15 -2.15 10.15 30.62 0.31 -1.84 16 19 C -0.15 -2.04 10.24 30.62 0.31 -1.73 16 20 N -0.46 -12.52 2.81 -514.85 -1.45 -13.96 16 21 C 0.14 2.60 6.27 86.38 0.54 3.14 16 22 C -0.18 -3.15 6.01 -10.79 -0.06 -3.22 16 23 C -0.19 -3.62 10.18 30.59 0.31 -3.31 16 24 C -0.14 -1.66 10.25 30.60 0.31 -1.35 16 25 C 0.08 2.72 5.40 86.33 0.47 3.19 16 26 C -0.09 -3.64 5.32 30.65 0.16 -3.48 16 27 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 28 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 29 H 0.07 3.70 6.17 -2.39 -0.01 3.69 16 30 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.02 1.12 8.06 -2.39 -0.02 1.11 16 32 H 0.06 2.50 8.10 -2.39 -0.02 2.48 16 33 H 0.16 1.48 7.63 -2.39 -0.02 1.47 16 34 H 0.08 1.71 7.92 -2.39 -0.02 1.69 16 35 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.14 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.13 1.42 7.57 -2.39 -0.02 1.40 16 39 H 0.10 1.94 7.87 -2.39 -0.02 1.92 16 40 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.09 2.00 8.03 -2.39 -0.02 1.98 16 42 H 0.09 1.79 8.14 -2.38 -0.02 1.78 16 43 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.09 2.62 8.10 -2.39 -0.02 2.60 16 46 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 48 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -70.18 386.76 3.51 -66.67 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.93 Total: 16.94 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 6.32 Total: -13.65 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -5.76 Total: -115.36 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -70.18 3.51 -66.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597398784.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.111 kcal (2) G-P(sol) polarization free energy of solvation -70.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds