Wall clock time and date at job start Tue Mar 31 2020 10:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99795 * 2 1 4 4 H 1.48505 * 109.46802 * 267.26901 * 3 2 1 5 5 H 1.48499 * 109.47554 * 27.27103 * 3 2 1 6 6 H 1.48499 * 109.47514 * 147.27587 * 3 2 1 7 7 C 1.37870 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00005 * 5.94156 * 7 2 1 9 9 C 1.50704 * 120.00335 * 185.65953 * 7 2 1 10 10 H 1.08999 * 109.49856 * 335.38292 * 9 7 2 11 11 C 1.53123 * 109.49950 * 95.45831 * 9 7 2 12 12 C 1.53122 * 109.15880 * 177.59901 * 11 9 7 13 13 C 1.53039 * 109.27731 * 302.34861 * 12 11 9 14 14 N 1.46843 * 109.52377 * 59.17690 * 13 12 11 15 15 C 1.38580 * 110.99698 * 174.16115 * 14 13 12 16 16 N 1.31222 * 126.47332 * 103.23369 * 15 14 13 17 17 N 1.28527 * 109.85945 * 179.82098 * 16 15 14 18 18 C 1.30292 * 110.05621 * 0.45207 * 17 16 15 19 19 C 1.50698 * 126.34948 * 179.69779 * 18 17 16 20 20 C 1.53003 * 117.49990 * 8.77967 * 19 18 17 21 21 C 1.52998 * 117.49469 * 300.12255 * 19 18 17 22 22 N 1.36455 * 126.47514 * 283.53959 * 15 14 13 23 23 C 1.46503 * 127.13338 * 0.02562 * 22 15 14 24 24 C 1.53006 * 109.46749 * 269.32170 * 23 22 15 25 25 C 1.53002 * 117.49793 * 244.29544 * 24 23 22 26 26 C 1.53004 * 117.49406 * 175.63470 * 24 23 22 27 27 C 1.46849 * 111.23614 * 298.27546 * 14 13 12 28 28 H 0.96995 * 120.00166 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.52204 * 297.50026 * 11 9 7 30 30 H 1.09000 * 109.52446 * 57.63110 * 11 9 7 31 31 H 1.09001 * 109.50249 * 62.28266 * 12 11 9 32 32 H 1.08993 * 109.50471 * 182.40076 * 12 11 9 33 33 H 1.09000 * 109.45909 * 179.19692 * 13 12 11 34 34 H 1.09002 * 109.45699 * 299.16010 * 13 12 11 35 35 H 1.09002 * 115.55033 * 154.45517 * 19 18 17 36 36 H 1.08997 * 117.49646 * 0.02562 * 20 19 18 37 37 H 1.08997 * 117.49943 * 145.02600 * 20 19 18 38 38 H 1.09004 * 117.50146 * 214.98287 * 21 19 18 39 39 H 1.08998 * 117.50442 * 359.97438 * 21 19 18 40 40 H 1.08997 * 109.47364 * 29.32487 * 23 22 15 41 41 H 1.09003 * 109.46939 * 149.33054 * 23 22 15 42 42 H 1.09000 * 115.54907 * 29.96714 * 24 23 22 43 43 H 1.09002 * 117.49700 * 359.97438 * 25 24 23 44 44 H 1.08999 * 117.49480 * 145.02929 * 25 24 23 45 45 H 1.09001 * 117.49515 * 214.98176 * 26 24 23 46 46 H 1.08993 * 117.50069 * 359.97438 * 26 24 23 47 47 H 1.08996 * 109.43095 * 301.69437 * 27 14 13 48 48 H 1.09000 * 109.49631 * 181.71761 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5543 2.0130 -1.3986 5 1 1.4189 2.6687 0.6415 6 1 3.5167 1.4577 0.7568 7 6 2.0046 -1.1940 0.0005 8 1 1.4689 -2.1269 -0.0959 9 6 3.5061 -1.1971 0.1292 10 1 3.9032 -0.2440 -0.2200 11 6 3.8929 -1.4056 1.5961 12 6 5.4187 -1.4675 1.7095 13 6 5.9460 -2.5964 0.8209 14 7 5.5503 -2.3505 -0.5716 15 6 6.1212 -3.2836 -1.4223 16 7 5.5190 -4.3150 -1.9659 17 7 6.3471 -4.9659 -2.7024 18 6 7.5195 -4.3988 -2.6650 19 6 8.7587 -4.8610 -3.3875 20 6 8.6013 -5.9882 -4.4101 21 6 9.2820 -6.2625 -3.0668 22 7 7.4174 -3.3069 -1.8483 23 6 8.4793 -2.3589 -1.5019 24 6 8.5017 -1.2219 -2.5256 25 6 9.7509 -1.0811 -3.3977 26 6 9.4788 -0.0703 -2.2808 27 6 4.0888 -2.3333 -0.7142 28 1 -0.4850 0.8400 -0.0004 29 1 3.5167 -0.5752 2.1935 30 1 3.4617 -2.3391 1.9574 31 1 5.8465 -0.5190 1.3849 32 1 5.6991 -1.6583 2.7453 33 1 7.0332 -2.6340 0.8884 34 1 5.5285 -3.5464 1.1548 35 1 9.4944 -4.0859 -3.6020 36 1 7.6014 -6.3951 -4.5606 37 1 9.2337 -5.9549 -5.2972 38 1 10.3620 -6.4096 -3.0707 39 1 8.7303 -6.8501 -2.3330 40 1 8.2920 -1.9503 -0.5090 41 1 9.4408 -2.8723 -1.5082 42 1 7.5409 -0.9790 -2.9795 43 1 10.5569 -1.7982 -3.2420 44 1 9.6119 -0.7450 -4.4253 45 1 9.1609 0.9303 -2.5740 46 1 10.1052 -0.1224 -1.3904 47 1 3.6801 -3.2847 -0.3739 48 1 3.8273 -2.1795 -1.7611 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597400716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:04 Heat of formation + Delta-G solvation = 132.935156 kcal Electronic energy + Delta-G solvation = -27376.069902 eV Core-core repulsion = 23854.926096 eV Total energy + Delta-G solvation = -3521.143806 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.83517 -38.61322 -37.98534 -37.22629 -34.41426 -33.65462 -32.21362 -30.43175 -28.98721 -27.75683 -25.22350 -24.07104 -24.02331 -22.71870 -22.60218 -21.79696 -21.32997 -20.49133 -20.09477 -18.74840 -17.56216 -16.98844 -16.33390 -15.98453 -15.86442 -15.19378 -14.76943 -14.52460 -14.25586 -14.14068 -13.86394 -13.42469 -13.24423 -12.79805 -12.56201 -12.47226 -12.27461 -12.15038 -11.86474 -11.76038 -11.43349 -11.22772 -11.14201 -11.06085 -10.83083 -10.79570 -10.77229 -10.46244 -10.32770 -10.24468 -10.01423 -9.86346 -9.63315 -9.46861 -9.19292 -8.93419 -8.51473 -7.95770 -6.07953 -4.07786 1.82169 2.29260 2.96348 3.29315 3.37559 3.39455 3.42405 3.70517 3.96753 4.12820 4.32856 4.40998 4.42068 4.55397 4.64404 4.68893 4.74989 4.82052 4.99374 5.10785 5.17836 5.20685 5.29646 5.32020 5.39546 5.41875 5.55964 5.58580 5.65598 5.70310 5.76772 5.81183 5.89348 5.95480 6.00782 6.04548 6.12317 6.21258 6.27789 6.38834 6.64989 6.67797 6.73868 6.88870 7.11065 7.31131 7.45043 7.59444 7.77876 8.51793 8.98007 8.99909 9.54643 11.05175 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015219 B = 0.003977 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.304109 B = 7038.361339 C = 7788.828408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.074 3.926 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.262 1.262 7 C -0.512 4.512 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.040 0.960 11 C -0.115 4.115 12 C -0.119 4.119 13 C 0.068 3.932 14 N -0.463 5.463 15 C 0.371 3.629 16 N -0.316 5.316 17 N -0.284 5.284 18 C 0.197 3.803 19 C -0.080 4.080 20 C -0.149 4.149 21 C -0.162 4.162 22 N -0.472 5.472 23 C 0.146 3.854 24 C -0.169 4.169 25 C -0.178 4.178 26 C -0.165 4.165 27 C 0.089 3.911 28 H 0.264 0.736 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.099 0.901 46 H 0.097 0.903 47 H 0.048 0.952 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.939 -4.693 -3.562 25.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.128 4.128 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.187 1.187 7 C -0.550 4.550 8 H 0.093 0.907 9 C 0.001 3.999 10 H 0.058 0.942 11 C -0.153 4.153 12 C -0.157 4.157 13 C -0.059 4.059 14 N -0.188 5.188 15 C 0.015 3.985 16 N -0.160 5.160 17 N -0.124 5.124 18 C -0.070 4.070 19 C -0.100 4.100 20 C -0.187 4.187 21 C -0.200 4.200 22 N -0.167 5.167 23 C 0.023 3.977 24 C -0.188 4.188 25 C -0.215 4.215 26 C -0.203 4.203 27 C -0.037 4.037 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.109 0.891 42 H 0.132 0.868 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.067 0.933 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 23.801 -5.068 -4.003 24.661 hybrid contribution 1.065 1.401 0.498 1.829 sum 24.866 -3.667 -3.505 25.378 Atomic orbital electron populations 1.69909 1.06333 1.26996 1.50293 1.25034 0.94652 0.98902 0.94214 0.86860 0.80296 0.83695 0.78746 1.20277 1.21677 1.18694 1.20897 0.88748 0.94815 1.50517 0.90728 1.19230 0.96284 0.93913 0.90433 0.94159 1.21924 0.91463 1.01456 1.00462 1.21712 0.99014 0.97617 0.97334 1.22136 0.98884 0.99033 0.85824 1.58965 1.14372 1.40741 1.04689 1.22825 0.82251 0.93493 0.99930 1.74751 1.24504 1.03799 1.12953 1.73913 0.97567 1.23768 1.17111 1.23518 0.97076 0.88723 0.97692 1.19987 0.93558 0.92896 1.03588 1.23012 1.03454 0.99507 0.92695 1.23076 1.00632 0.96255 1.00049 1.46090 1.10184 1.23187 1.37214 1.21369 0.89009 0.88152 0.99155 1.22589 0.96368 0.98255 1.01614 1.23105 0.98740 1.02905 0.96731 1.22953 1.02006 0.94932 1.00391 1.22363 0.78718 1.00488 1.02109 0.92616 0.92426 0.92675 0.91669 0.92016 0.92136 0.93720 0.86220 0.87155 0.88024 0.88083 0.88242 0.88103 0.89099 0.86813 0.88672 0.88531 0.88209 0.88440 0.93346 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 21.31 27.09 -169.99 -4.61 16.71 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.01 6.67 56.52 0.38 -5.64 16 7 C -0.51 -14.18 8.86 -34.44 -0.31 -14.48 16 8 H 0.07 2.27 8.06 -52.48 -0.42 1.85 16 9 C 0.02 0.48 1.94 -91.69 -0.18 0.31 16 10 H 0.04 0.95 5.19 -51.93 -0.27 0.68 16 11 C -0.11 -2.31 5.27 -26.60 -0.14 -2.45 16 12 C -0.12 -1.89 6.09 -26.65 -0.16 -2.05 16 13 C 0.07 1.07 5.30 -3.84 -0.02 1.05 16 14 N -0.46 -8.37 4.67 -174.55 -0.81 -9.19 16 15 C 0.37 6.64 6.87 -318.87 -2.19 4.45 16 16 N -0.32 -6.41 11.47 30.32 0.35 -6.06 16 17 N -0.28 -5.17 11.79 32.99 0.39 -4.78 16 18 C 0.20 2.85 7.59 -154.02 -1.17 1.68 16 19 C -0.08 -0.79 5.88 -91.77 -0.54 -1.33 16 20 C -0.15 -1.32 10.15 -26.69 -0.27 -1.59 16 21 C -0.16 -1.34 10.24 -26.70 -0.27 -1.61 16 22 N -0.47 -6.74 2.81 -114.08 -0.32 -7.06 16 23 C 0.15 1.51 6.28 -4.04 -0.03 1.48 16 24 C -0.17 -1.71 6.01 -90.61 -0.54 -2.25 16 25 C -0.18 -1.34 10.18 -26.69 -0.27 -1.61 16 26 C -0.17 -1.31 10.26 -26.69 -0.27 -1.58 16 27 C 0.09 1.91 4.18 -3.83 -0.02 1.89 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.79 6.64 -51.93 -0.34 0.45 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.12 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.11 1.20 7.92 -51.93 -0.41 0.78 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.10 1.03 6.58 -51.93 -0.34 0.69 16 41 H 0.09 0.70 7.68 -51.93 -0.40 0.30 16 42 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.09 0.57 8.03 -51.93 -0.42 0.15 16 44 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.05 1.09 8.09 -51.93 -0.42 0.67 16 48 H 0.07 1.74 8.10 -51.93 -0.42 1.32 16 LS Contribution 383.68 15.07 5.78 5.78 Total: -1.00 -32.47 383.68 -13.03 -45.50 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -8.10 Total: 1.74 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -6.48 Total: -16.10 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.38 Total: -53.63 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.61 Total: 16.71 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.47 -13.03 -45.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597400716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.436 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds