Wall clock time and date at job start Tue Mar 31 2020 10:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99795 * 2 1 4 4 H 1.48505 * 109.46802 * 267.26901 * 3 2 1 5 5 H 1.48499 * 109.47554 * 27.27103 * 3 2 1 6 6 H 1.48499 * 109.47514 * 147.27587 * 3 2 1 7 7 C 1.37870 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00005 * 5.94156 * 7 2 1 9 9 C 1.50704 * 120.00335 * 185.65953 * 7 2 1 10 10 H 1.08999 * 109.49856 * 335.38292 * 9 7 2 11 11 C 1.53123 * 109.49950 * 95.45831 * 9 7 2 12 12 C 1.53122 * 109.15880 * 177.59901 * 11 9 7 13 13 C 1.53039 * 109.27731 * 302.34861 * 12 11 9 14 14 N 1.46843 * 109.52377 * 59.17690 * 13 12 11 15 15 C 1.38580 * 110.99698 * 174.16115 * 14 13 12 16 16 N 1.31222 * 126.47332 * 103.23369 * 15 14 13 17 17 N 1.28527 * 109.85945 * 179.82098 * 16 15 14 18 18 C 1.30292 * 110.05621 * 0.45207 * 17 16 15 19 19 C 1.50698 * 126.34948 * 179.69779 * 18 17 16 20 20 C 1.53003 * 117.49990 * 8.77967 * 19 18 17 21 21 C 1.52998 * 117.49469 * 300.12255 * 19 18 17 22 22 N 1.36455 * 126.47514 * 283.53959 * 15 14 13 23 23 C 1.46503 * 127.13338 * 0.02562 * 22 15 14 24 24 C 1.53006 * 109.46749 * 269.32170 * 23 22 15 25 25 C 1.53002 * 117.49793 * 244.29544 * 24 23 22 26 26 C 1.53004 * 117.49406 * 175.63470 * 24 23 22 27 27 C 1.46849 * 111.23614 * 298.27546 * 14 13 12 28 28 H 0.96995 * 120.00166 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.52204 * 297.50026 * 11 9 7 30 30 H 1.09000 * 109.52446 * 57.63110 * 11 9 7 31 31 H 1.09001 * 109.50249 * 62.28266 * 12 11 9 32 32 H 1.08993 * 109.50471 * 182.40076 * 12 11 9 33 33 H 1.09000 * 109.45909 * 179.19692 * 13 12 11 34 34 H 1.09002 * 109.45699 * 299.16010 * 13 12 11 35 35 H 1.09002 * 115.55033 * 154.45517 * 19 18 17 36 36 H 1.08997 * 117.49646 * 0.02562 * 20 19 18 37 37 H 1.08997 * 117.49943 * 145.02600 * 20 19 18 38 38 H 1.09004 * 117.50146 * 214.98287 * 21 19 18 39 39 H 1.08998 * 117.50442 * 359.97438 * 21 19 18 40 40 H 1.08997 * 109.47364 * 29.32487 * 23 22 15 41 41 H 1.09003 * 109.46939 * 149.33054 * 23 22 15 42 42 H 1.09000 * 115.54907 * 29.96714 * 24 23 22 43 43 H 1.09002 * 117.49700 * 359.97438 * 25 24 23 44 44 H 1.08999 * 117.49480 * 145.02929 * 25 24 23 45 45 H 1.09001 * 117.49515 * 214.98176 * 26 24 23 46 46 H 1.08993 * 117.50069 * 359.97438 * 26 24 23 47 47 H 1.08996 * 109.43095 * 301.69437 * 27 14 13 48 48 H 1.09000 * 109.49631 * 181.71761 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5543 2.0130 -1.3986 5 1 1.4189 2.6687 0.6415 6 1 3.5167 1.4577 0.7568 7 6 2.0046 -1.1940 0.0005 8 1 1.4689 -2.1269 -0.0959 9 6 3.5061 -1.1971 0.1292 10 1 3.9032 -0.2440 -0.2200 11 6 3.8929 -1.4056 1.5961 12 6 5.4187 -1.4675 1.7095 13 6 5.9460 -2.5964 0.8209 14 7 5.5503 -2.3505 -0.5716 15 6 6.1212 -3.2836 -1.4223 16 7 5.5190 -4.3150 -1.9659 17 7 6.3471 -4.9659 -2.7024 18 6 7.5195 -4.3988 -2.6650 19 6 8.7587 -4.8610 -3.3875 20 6 8.6013 -5.9882 -4.4101 21 6 9.2820 -6.2625 -3.0668 22 7 7.4174 -3.3069 -1.8483 23 6 8.4793 -2.3589 -1.5019 24 6 8.5017 -1.2219 -2.5256 25 6 9.7509 -1.0811 -3.3977 26 6 9.4788 -0.0703 -2.2808 27 6 4.0888 -2.3333 -0.7142 28 1 -0.4850 0.8400 -0.0004 29 1 3.5167 -0.5752 2.1935 30 1 3.4617 -2.3391 1.9574 31 1 5.8465 -0.5190 1.3849 32 1 5.6991 -1.6583 2.7453 33 1 7.0332 -2.6340 0.8884 34 1 5.5285 -3.5464 1.1548 35 1 9.4944 -4.0859 -3.6020 36 1 7.6014 -6.3951 -4.5606 37 1 9.2337 -5.9549 -5.2972 38 1 10.3620 -6.4096 -3.0707 39 1 8.7303 -6.8501 -2.3330 40 1 8.2920 -1.9503 -0.5090 41 1 9.4408 -2.8723 -1.5082 42 1 7.5409 -0.9790 -2.9795 43 1 10.5569 -1.7982 -3.2420 44 1 9.6119 -0.7450 -4.4253 45 1 9.1609 0.9303 -2.5740 46 1 10.1052 -0.1224 -1.3904 47 1 3.6801 -3.2847 -0.3739 48 1 3.8273 -2.1795 -1.7611 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597400716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:03 Heat of formation + Delta-G solvation = 116.051259 kcal Electronic energy + Delta-G solvation = -27376.802043 eV Core-core repulsion = 23854.926096 eV Total energy + Delta-G solvation = -3521.875947 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.07312 -40.11219 -38.70430 -38.01470 -35.78116 -35.15555 -33.99284 -32.18577 -30.27153 -28.67067 -27.15989 -25.56371 -25.08097 -23.35029 -23.25893 -23.14049 -22.48808 -21.64800 -21.12897 -20.36286 -19.15256 -18.44898 -17.60436 -17.23524 -16.74556 -16.23706 -16.12483 -15.82267 -15.50114 -15.23707 -15.18178 -14.81573 -14.58634 -14.38703 -14.18698 -13.83383 -13.23038 -13.03037 -12.97628 -12.91132 -12.68606 -12.57205 -12.37095 -12.34228 -12.01448 -11.89458 -11.84025 -11.69374 -11.59080 -11.42207 -11.39227 -11.24005 -11.06945 -10.99948 -10.87492 -10.67615 -10.39411 -9.36059 -8.30404 -6.35749 0.65716 1.16824 1.35336 1.36727 1.48690 1.70989 2.34825 2.62253 2.81752 2.94631 3.06001 3.25306 3.60941 3.64030 3.76545 3.82169 3.95238 3.97053 3.97764 4.06439 4.09733 4.14524 4.24508 4.27606 4.37383 4.41430 4.51815 4.61775 4.69164 4.77217 4.78663 4.81281 4.90571 4.92141 4.95421 4.99221 5.00893 5.08015 5.13568 5.18730 5.21401 5.25761 5.31002 5.48780 5.52970 5.64830 5.66112 5.80309 6.22973 6.30751 6.71459 7.30037 7.71554 8.86950 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015219 B = 0.003977 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.304109 B = 7038.361339 C = 7788.828408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.014 3.986 3 Si 0.945 3.055 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.232 1.232 7 C -0.520 4.520 8 H 0.024 0.976 9 C 0.025 3.975 10 H 0.043 0.957 11 C -0.114 4.114 12 C -0.107 4.107 13 C 0.066 3.934 14 N -0.455 5.455 15 C 0.355 3.645 16 N -0.368 5.368 17 N -0.331 5.331 18 C 0.216 3.784 19 C -0.092 4.092 20 C -0.151 4.151 21 C -0.142 4.142 22 N -0.463 5.463 23 C 0.142 3.858 24 C -0.193 4.193 25 C -0.161 4.161 26 C -0.155 4.155 27 C 0.108 3.892 28 H 0.267 0.733 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.032 0.968 35 H 0.154 0.846 36 H 0.081 0.919 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.129 0.871 42 H 0.073 0.927 43 H 0.123 0.877 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.119 0.881 47 H 0.023 0.977 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.934 -3.463 -3.033 31.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.183 4.183 3 Si 0.768 3.232 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.155 1.155 7 C -0.559 4.559 8 H 0.042 0.958 9 C 0.005 3.995 10 H 0.061 0.939 11 C -0.152 4.152 12 C -0.144 4.144 13 C -0.060 4.060 14 N -0.179 5.179 15 C -0.002 4.002 16 N -0.211 5.211 17 N -0.169 5.169 18 C -0.052 4.052 19 C -0.113 4.113 20 C -0.189 4.189 21 C -0.180 4.180 22 N -0.157 5.157 23 C 0.021 3.979 24 C -0.212 4.212 25 C -0.198 4.198 26 C -0.193 4.193 27 C -0.019 4.019 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.050 0.950 35 H 0.171 0.829 36 H 0.099 0.901 37 H 0.151 0.849 38 H 0.157 0.843 39 H 0.097 0.903 40 H 0.123 0.877 41 H 0.146 0.854 42 H 0.091 0.909 43 H 0.141 0.859 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.137 0.863 47 H 0.042 0.958 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 29.838 -3.852 -3.466 30.285 hybrid contribution -0.810 0.875 0.240 1.216 sum 29.028 -2.977 -3.226 29.358 Atomic orbital electron populations 1.70070 1.08437 1.28207 1.52225 1.25959 0.95453 1.03123 0.93758 0.85764 0.79958 0.78213 0.79232 1.19938 1.21159 1.15522 1.21156 0.91540 0.93049 1.50114 0.95756 1.19135 0.93011 0.94333 0.92996 0.93930 1.21781 0.95288 1.00677 0.97445 1.21653 0.94940 0.98216 0.99618 1.22301 1.01115 0.98462 0.84139 1.58908 1.11593 1.41118 1.06315 1.22723 0.83892 0.93333 1.00299 1.74616 1.26602 1.05520 1.14399 1.73818 0.99176 1.25279 1.18654 1.24443 0.97423 0.87471 0.95861 1.20372 0.92300 0.94538 1.04065 1.23081 1.02825 0.98731 0.94276 1.23149 1.02384 0.93873 0.98638 1.46270 1.09492 1.23537 1.36357 1.21764 0.89101 0.87758 0.99304 1.22389 0.95729 0.99863 1.03240 1.23233 0.97398 1.02788 0.96356 1.23055 1.00707 0.94083 1.01440 1.21832 0.81635 0.98658 0.99805 0.92439 0.92779 0.93931 0.90449 0.88275 0.88266 0.95002 0.82891 0.90073 0.84926 0.84304 0.90273 0.87685 0.85356 0.90905 0.85906 0.88841 0.88807 0.86277 0.95848 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 2 C 0.01 0.84 5.47 84.65 0.46 1.30 16 3 Si 0.95 44.30 27.09 68.60 1.86 46.16 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.23 -9.70 6.67 99.48 0.66 -9.04 16 7 C -0.52 -30.61 8.86 25.60 0.23 -30.39 16 8 H 0.02 1.62 8.06 -2.91 -0.02 1.59 16 9 C 0.02 1.17 1.94 -11.49 -0.02 1.15 16 10 H 0.04 1.99 5.19 -2.39 -0.01 1.98 16 11 C -0.11 -4.52 5.27 30.68 0.16 -4.36 16 12 C -0.11 -3.06 6.09 30.65 0.19 -2.87 16 13 C 0.07 1.95 5.30 86.33 0.46 2.40 16 14 N -0.45 -16.52 4.67 -706.16 -3.30 -19.82 16 15 C 0.36 12.92 6.87 260.11 1.79 14.71 16 16 N -0.37 -15.76 11.47 -58.00 -0.67 -16.43 16 17 N -0.33 -12.50 11.79 -49.54 -0.58 -13.08 16 18 C 0.22 6.05 7.59 137.64 1.04 7.09 16 19 C -0.09 -1.53 5.88 -11.54 -0.07 -1.60 16 20 C -0.15 -2.33 10.15 30.62 0.31 -2.02 16 21 C -0.14 -1.86 10.24 30.62 0.31 -1.54 16 22 N -0.46 -12.56 2.81 -514.83 -1.45 -14.01 16 23 C 0.14 2.40 6.28 86.38 0.54 2.95 16 24 C -0.19 -3.38 6.01 -10.79 -0.06 -3.44 16 25 C -0.16 -1.75 10.18 30.62 0.31 -1.44 16 26 C -0.16 -1.87 10.26 30.62 0.31 -1.55 16 27 C 0.11 4.92 4.18 86.32 0.36 5.28 16 28 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 29 H 0.05 2.17 8.14 -2.39 -0.02 2.16 16 30 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.10 2.21 6.64 -2.39 -0.02 2.19 16 34 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.15 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.08 1.76 7.92 -2.39 -0.02 1.74 16 37 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.14 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.11 1.70 6.58 -2.39 -0.02 1.68 16 41 H 0.13 1.23 7.68 -2.39 -0.02 1.22 16 42 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.12 0.69 8.03 -2.39 -0.02 0.67 16 44 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 45 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.02 1.15 8.09 -2.39 -0.02 1.13 16 48 H 0.05 2.29 8.10 -2.39 -0.02 2.27 16 Total: -1.00 -79.83 383.68 3.38 -76.44 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.89 Total: 15.35 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 6.33 Total: -14.34 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -5.69 Total: -123.61 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.86 Total: 46.16 kcal Total: -79.83 3.38 -76.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597400716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.496 kcal (2) G-P(sol) polarization free energy of solvation -79.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds