Wall clock time and date at job start Tue Mar 31 2020 10:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99940 * 2 1 4 4 H 1.48497 * 109.47467 * 240.00086 * 3 2 1 5 5 H 1.48506 * 109.47135 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47056 * 119.99913 * 3 2 1 7 7 C 1.37877 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99859 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99901 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.53917 * 59.90072 * 9 7 2 11 11 C 1.53124 * 109.50475 * 299.80191 * 9 7 2 12 12 C 1.53117 * 109.16224 * 182.40927 * 11 9 7 13 13 C 1.53036 * 109.28138 * 57.65254 * 12 11 9 14 14 N 1.46847 * 109.52307 * 300.82177 * 13 12 11 15 15 C 1.38573 * 110.99974 * 185.84206 * 14 13 12 16 16 N 1.31221 * 126.47088 * 260.60748 * 15 14 13 17 17 N 1.28529 * 109.86121 * 180.25612 * 16 15 14 18 18 C 1.30292 * 110.04999 * 359.74569 * 17 16 15 19 19 C 1.50700 * 126.34365 * 180.02562 * 18 17 16 20 20 C 1.52997 * 117.50336 * 8.57211 * 19 18 17 21 21 C 1.52998 * 60.00281 * 252.51309 * 20 19 18 22 22 N 1.36456 * 126.47779 * 80.43252 * 15 14 13 23 23 C 1.46494 * 127.13181 * 0.02562 * 22 15 14 24 24 C 1.52998 * 109.47142 * 90.29422 * 23 22 15 25 25 C 1.53002 * 117.50190 * 115.84015 * 24 23 22 26 26 C 1.53001 * 117.50007 * 184.46641 * 24 23 22 27 27 C 1.46847 * 111.19648 * 61.74179 * 14 13 12 28 28 H 0.97003 * 119.99862 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.52064 * 302.31300 * 11 9 7 30 30 H 1.09002 * 109.52286 * 62.49824 * 11 9 7 31 31 H 1.09006 * 109.50240 * 177.59884 * 12 11 9 32 32 H 1.09006 * 109.49701 * 297.67162 * 12 11 9 33 33 H 1.09004 * 109.45973 * 180.80949 * 13 12 11 34 34 H 1.08994 * 109.46231 * 60.84009 * 13 12 11 35 35 H 1.09003 * 115.54905 * 154.28511 * 19 18 17 36 36 H 1.08999 * 117.49865 * 0.02562 * 20 19 18 37 37 H 1.09002 * 117.50049 * 145.02114 * 20 19 18 38 38 H 1.09003 * 117.49648 * 252.50832 * 21 20 19 39 39 H 1.08992 * 117.49890 * 107.49014 * 21 20 19 40 40 H 1.08996 * 109.47855 * 330.29173 * 23 22 15 41 41 H 1.09002 * 109.47233 * 210.28747 * 23 22 15 42 42 H 1.09007 * 115.56098 * 330.14909 * 24 23 22 43 43 H 1.08999 * 117.49749 * 214.97726 * 25 24 23 44 44 H 1.08996 * 117.49506 * 359.97438 * 25 24 23 45 45 H 1.08997 * 117.49798 * 359.97438 * 26 24 23 46 46 H 1.09004 * 117.49764 * 145.02086 * 26 24 23 47 47 H 1.08996 * 109.46303 * 58.27371 * 27 14 13 48 48 H 1.09006 * 109.46144 * 178.25089 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 1 0.6231 -2.5566 -0.8907 11 6 0.3738 -2.5840 1.2504 12 6 -0.3417 -3.9376 1.2718 13 6 0.6983 -5.0596 1.2345 14 7 1.5114 -4.9348 0.0181 15 6 2.3765 -6.0093 -0.1134 16 7 3.6496 -6.0290 0.2040 17 7 4.1461 -7.1861 -0.0541 18 6 3.2256 -7.9683 -0.5423 19 6 3.4067 -9.4020 -0.9700 20 6 4.7404 -10.0748 -0.6394 21 6 4.4175 -9.6849 -2.0832 22 7 2.0648 -7.2477 -0.5942 23 6 0.7588 -7.7075 -1.0728 24 6 0.6434 -7.4409 -2.5749 25 6 0.5195 -8.6532 -3.5002 26 6 -0.6941 -7.7563 -3.2477 27 6 2.2450 -3.6629 -0.0020 28 1 -0.4850 0.8401 -0.0004 29 1 0.9972 -2.4875 2.1392 30 1 -0.3642 -1.7820 1.2331 31 1 -0.9349 -4.0212 2.1825 32 1 -0.9954 -4.0173 0.4032 33 1 0.1915 -6.0247 1.2352 34 1 1.3423 -4.9871 2.1109 35 1 2.5091 -10.0196 -0.9363 36 1 5.4868 -9.4807 -0.1123 37 1 4.7205 -11.1353 -0.3880 38 1 4.1851 -10.4888 -2.7817 39 1 4.9515 -8.8341 -2.5062 40 1 -0.0306 -7.1707 -0.5468 41 1 0.6588 -8.7765 -0.8849 42 1 1.2020 -6.5809 -2.9443 43 1 0.9967 -8.5907 -4.4782 44 1 0.5207 -9.6407 -3.0387 45 1 -1.4917 -8.1541 -2.6202 46 1 -1.0153 -7.1038 -4.0596 47 1 2.8818 -3.5969 0.8801 48 1 2.8616 -3.6134 -0.8996 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597400717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:06 Heat of formation + Delta-G solvation = 132.036768 kcal Electronic energy + Delta-G solvation = -27308.466338 eV Core-core repulsion = 23787.283576 eV Total energy + Delta-G solvation = -3521.182763 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.77148 -38.41210 -37.89612 -37.17038 -34.33951 -33.68223 -31.89503 -29.99930 -28.85231 -27.66508 -25.08537 -24.00291 -23.81563 -22.64333 -22.51964 -21.75840 -21.35367 -20.43553 -20.00032 -18.56890 -17.52195 -16.69423 -16.13318 -15.82314 -15.60522 -15.07665 -14.74241 -14.47771 -14.35604 -14.02864 -13.73096 -13.29769 -12.93992 -12.61475 -12.54080 -12.28263 -12.09922 -11.88393 -11.77155 -11.70825 -11.34393 -11.11134 -10.93128 -10.81946 -10.79060 -10.72810 -10.68618 -10.36584 -10.22740 -10.17052 -9.93584 -9.87842 -9.56402 -9.23574 -9.08764 -8.72718 -8.32296 -7.87098 -5.99679 -4.05194 1.88705 2.36181 3.01477 3.34444 3.38142 3.42135 3.52103 3.75764 4.07534 4.17849 4.41696 4.46991 4.48426 4.61869 4.69351 4.75256 4.81222 4.85374 5.13251 5.23439 5.29955 5.31689 5.38545 5.43067 5.45513 5.57695 5.64947 5.66198 5.81060 5.84261 5.86091 5.91880 5.99545 6.01776 6.09637 6.23080 6.37957 6.41531 6.52749 6.66592 6.80746 6.90208 7.05293 7.28609 7.38991 7.71899 7.74706 8.00168 8.10537 8.42939 8.97750 9.04393 9.59335 11.06676 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016178 B = 0.003587 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.337611 B = 7803.294840 C = 8472.826150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.056 0.944 9 C 0.057 3.943 10 H 0.035 0.965 11 C -0.114 4.114 12 C -0.116 4.116 13 C 0.070 3.930 14 N -0.459 5.459 15 C 0.372 3.628 16 N -0.319 5.319 17 N -0.286 5.286 18 C 0.196 3.804 19 C -0.077 4.077 20 C -0.152 4.152 21 C -0.157 4.157 22 N -0.470 5.470 23 C 0.148 3.852 24 C -0.166 4.166 25 C -0.176 4.176 26 C -0.166 4.166 27 C 0.084 3.916 28 H 0.260 0.740 29 H 0.035 0.965 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.113 0.887 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.100 0.900 47 H 0.044 0.956 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.531 -21.478 -3.750 21.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.038 3.962 10 H 0.053 0.947 11 C -0.152 4.152 12 C -0.154 4.154 13 C -0.057 4.057 14 N -0.185 5.185 15 C 0.016 3.984 16 N -0.163 5.163 17 N -0.126 5.126 18 C -0.071 4.071 19 C -0.098 4.098 20 C -0.190 4.190 21 C -0.196 4.196 22 N -0.164 5.164 23 C 0.025 3.975 24 C -0.185 4.185 25 C -0.213 4.213 26 C -0.203 4.203 27 C -0.041 4.041 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.114 0.886 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.107 0.893 42 H 0.131 0.869 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.115 0.885 46 H 0.118 0.882 47 H 0.062 0.938 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.689 -20.830 -3.618 21.153 hybrid contribution -0.472 0.563 0.077 0.739 sum -1.161 -20.267 -3.541 20.606 Atomic orbital electron populations 1.69871 1.05840 1.26527 1.50610 1.24906 0.94842 0.98967 0.94966 0.86653 0.79595 0.83024 0.78715 1.20253 1.21338 1.20245 1.21059 0.93016 0.90281 1.50900 0.92565 1.18717 0.92472 0.90135 0.94922 0.94677 1.21712 1.00206 0.94468 0.98772 1.21712 0.96737 0.96107 1.00801 1.22162 0.95400 0.99283 0.88867 1.58940 1.21515 1.00086 1.37920 1.22865 0.91696 0.85491 0.98343 1.74730 1.05987 1.13704 1.21884 1.73900 1.25277 0.97757 1.15664 1.23508 0.82592 0.95805 1.05224 1.19928 0.95803 0.87900 1.06151 1.23011 0.96851 1.00706 0.98419 1.23034 1.01286 1.03511 0.91731 1.46097 1.10465 1.10991 1.48884 1.21341 0.82377 1.00305 0.93525 1.22541 1.02480 1.00913 0.92590 1.23061 1.02370 0.94783 1.01069 1.22945 0.91129 1.03093 1.03151 1.22381 0.96229 0.84556 1.00956 0.92971 0.94613 0.88644 0.92650 0.91764 0.92564 0.94084 0.86472 0.87231 0.88108 0.88085 0.88231 0.88054 0.89328 0.86889 0.88643 0.88772 0.88494 0.88199 0.93799 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.89 11.36 55.43 0.63 -24.27 16 2 C 0.06 1.77 5.31 -17.82 -0.09 1.67 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.07 8.56 -34.44 -0.29 -14.37 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 10 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 11 C -0.11 -2.59 5.03 -26.61 -0.13 -2.72 16 12 C -0.12 -2.11 6.09 -26.65 -0.16 -2.27 16 13 C 0.07 1.21 5.37 -3.83 -0.02 1.19 16 14 N -0.46 -8.79 4.67 -174.55 -0.82 -9.60 16 15 C 0.37 6.91 6.84 -318.88 -2.18 4.73 16 16 N -0.32 -6.61 11.51 30.31 0.35 -6.26 16 17 N -0.29 -5.31 11.79 32.99 0.39 -4.92 16 18 C 0.20 2.91 7.59 -154.02 -1.17 1.74 16 19 C -0.08 -0.79 6.00 -91.77 -0.55 -1.34 16 20 C -0.15 -1.37 10.15 -26.73 -0.27 -1.65 16 21 C -0.16 -1.39 10.23 -26.73 -0.27 -1.67 16 22 N -0.47 -6.99 2.81 -114.09 -0.32 -7.31 16 23 C 0.15 1.63 6.30 -4.05 -0.03 1.60 16 24 C -0.17 -1.78 6.01 -90.62 -0.54 -2.33 16 25 C -0.18 -1.42 10.18 -26.73 -0.27 -1.69 16 26 C -0.17 -1.42 10.25 -26.73 -0.27 -1.69 16 27 C 0.08 1.88 4.17 -3.83 -0.02 1.87 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.10 2.42 6.16 -51.93 -0.32 2.10 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.83 7.10 -51.93 -0.37 0.46 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.12 0.92 7.55 -51.93 -0.39 0.53 16 36 H 0.11 1.20 7.92 -51.93 -0.41 0.79 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.10 1.14 7.10 -51.93 -0.37 0.77 16 41 H 0.09 0.73 7.20 -51.93 -0.37 0.36 16 42 H 0.11 1.55 8.14 -51.92 -0.42 1.13 16 43 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.09 0.61 8.03 -51.93 -0.42 0.20 16 45 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.04 1.03 8.07 -51.93 -0.42 0.61 16 48 H 0.07 1.53 8.10 -51.93 -0.42 1.11 16 LS Contribution 384.33 15.07 5.79 5.79 Total: -1.00 -30.68 384.33 -13.59 -44.27 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -8.11 Total: 1.72 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -6.49 Total: -15.73 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.23 Total: -52.36 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.68 -13.59 -44.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597400717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.312 kcal (2) G-P(sol) polarization free energy of solvation -30.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds