Wall clock time and date at job start Tue Mar 31 2020 10:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99940 * 2 1 4 4 H 1.48497 * 109.47467 * 240.00086 * 3 2 1 5 5 H 1.48506 * 109.47135 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47056 * 119.99913 * 3 2 1 7 7 C 1.37877 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99859 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99901 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.53917 * 59.90072 * 9 7 2 11 11 C 1.53124 * 109.50475 * 299.80191 * 9 7 2 12 12 C 1.53117 * 109.16224 * 182.40927 * 11 9 7 13 13 C 1.53036 * 109.28138 * 57.65254 * 12 11 9 14 14 N 1.46847 * 109.52307 * 300.82177 * 13 12 11 15 15 C 1.38573 * 110.99974 * 185.84206 * 14 13 12 16 16 N 1.31221 * 126.47088 * 260.60748 * 15 14 13 17 17 N 1.28529 * 109.86121 * 180.25612 * 16 15 14 18 18 C 1.30292 * 110.04999 * 359.74569 * 17 16 15 19 19 C 1.50700 * 126.34365 * 180.02562 * 18 17 16 20 20 C 1.52997 * 117.50336 * 8.57211 * 19 18 17 21 21 C 1.52998 * 60.00281 * 252.51309 * 20 19 18 22 22 N 1.36456 * 126.47779 * 80.43252 * 15 14 13 23 23 C 1.46494 * 127.13181 * 0.02562 * 22 15 14 24 24 C 1.52998 * 109.47142 * 90.29422 * 23 22 15 25 25 C 1.53002 * 117.50190 * 115.84015 * 24 23 22 26 26 C 1.53001 * 117.50007 * 184.46641 * 24 23 22 27 27 C 1.46847 * 111.19648 * 61.74179 * 14 13 12 28 28 H 0.97003 * 119.99862 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.52064 * 302.31300 * 11 9 7 30 30 H 1.09002 * 109.52286 * 62.49824 * 11 9 7 31 31 H 1.09006 * 109.50240 * 177.59884 * 12 11 9 32 32 H 1.09006 * 109.49701 * 297.67162 * 12 11 9 33 33 H 1.09004 * 109.45973 * 180.80949 * 13 12 11 34 34 H 1.08994 * 109.46231 * 60.84009 * 13 12 11 35 35 H 1.09003 * 115.54905 * 154.28511 * 19 18 17 36 36 H 1.08999 * 117.49865 * 0.02562 * 20 19 18 37 37 H 1.09002 * 117.50049 * 145.02114 * 20 19 18 38 38 H 1.09003 * 117.49648 * 252.50832 * 21 20 19 39 39 H 1.08992 * 117.49890 * 107.49014 * 21 20 19 40 40 H 1.08996 * 109.47855 * 330.29173 * 23 22 15 41 41 H 1.09002 * 109.47233 * 210.28747 * 23 22 15 42 42 H 1.09007 * 115.56098 * 330.14909 * 24 23 22 43 43 H 1.08999 * 117.49749 * 214.97726 * 25 24 23 44 44 H 1.08996 * 117.49506 * 359.97438 * 25 24 23 45 45 H 1.08997 * 117.49798 * 359.97438 * 26 24 23 46 46 H 1.09004 * 117.49764 * 145.02086 * 26 24 23 47 47 H 1.08996 * 109.46303 * 58.27371 * 27 14 13 48 48 H 1.09006 * 109.46144 * 178.25089 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 1 0.6231 -2.5566 -0.8907 11 6 0.3738 -2.5840 1.2504 12 6 -0.3417 -3.9376 1.2718 13 6 0.6983 -5.0596 1.2345 14 7 1.5114 -4.9348 0.0181 15 6 2.3765 -6.0093 -0.1134 16 7 3.6496 -6.0290 0.2040 17 7 4.1461 -7.1861 -0.0541 18 6 3.2256 -7.9683 -0.5423 19 6 3.4067 -9.4020 -0.9700 20 6 4.7404 -10.0748 -0.6394 21 6 4.4175 -9.6849 -2.0832 22 7 2.0648 -7.2477 -0.5942 23 6 0.7588 -7.7075 -1.0728 24 6 0.6434 -7.4409 -2.5749 25 6 0.5195 -8.6532 -3.5002 26 6 -0.6941 -7.7563 -3.2477 27 6 2.2450 -3.6629 -0.0020 28 1 -0.4850 0.8401 -0.0004 29 1 0.9972 -2.4875 2.1392 30 1 -0.3642 -1.7820 1.2331 31 1 -0.9349 -4.0212 2.1825 32 1 -0.9954 -4.0173 0.4032 33 1 0.1915 -6.0247 1.2352 34 1 1.3423 -4.9871 2.1109 35 1 2.5091 -10.0196 -0.9363 36 1 5.4868 -9.4807 -0.1123 37 1 4.7205 -11.1353 -0.3880 38 1 4.1851 -10.4888 -2.7817 39 1 4.9515 -8.8341 -2.5062 40 1 -0.0306 -7.1707 -0.5468 41 1 0.6588 -8.7765 -0.8849 42 1 1.2020 -6.5809 -2.9443 43 1 0.9967 -8.5907 -4.4782 44 1 0.5207 -9.6407 -3.0387 45 1 -1.4917 -8.1541 -2.6202 46 1 -1.0153 -7.1038 -4.0596 47 1 2.8818 -3.5969 0.8801 48 1 2.8616 -3.6134 -0.8996 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597400717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:06 Heat of formation + Delta-G solvation = 118.056984 kcal Electronic energy + Delta-G solvation = -27309.072547 eV Core-core repulsion = 23787.283576 eV Total energy + Delta-G solvation = -3521.788972 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.05980 -40.01568 -38.68542 -38.00095 -35.83000 -35.19256 -33.63776 -31.86055 -30.20403 -28.65030 -27.07152 -25.43820 -25.08538 -23.35545 -23.28651 -23.18156 -22.55584 -21.66678 -21.07417 -20.26547 -18.85786 -18.24634 -17.37678 -17.25270 -16.76038 -16.48517 -16.07156 -15.64832 -15.45765 -15.25243 -15.12343 -14.62518 -14.49981 -14.26983 -14.18271 -13.55778 -13.19912 -12.96645 -12.88323 -12.75328 -12.68583 -12.60342 -12.35551 -12.33523 -12.08987 -11.97819 -11.84025 -11.64603 -11.57725 -11.47030 -11.30939 -11.12464 -11.02208 -10.92706 -10.79052 -10.44073 -10.33476 -9.35145 -8.11859 -6.25022 0.66320 1.18655 1.40974 1.41866 1.49867 1.70832 2.40604 2.68888 2.84494 2.97405 3.15658 3.25995 3.63804 3.64383 3.81199 3.85250 3.94837 3.99360 4.04385 4.07989 4.10286 4.16838 4.30116 4.38549 4.43560 4.50609 4.53823 4.68319 4.75699 4.80327 4.82670 4.86711 4.94036 4.97172 4.99948 5.02235 5.05565 5.15107 5.20895 5.26012 5.27105 5.32427 5.41712 5.59803 5.64747 5.72114 5.96369 6.09551 6.27947 6.35619 6.82889 7.42276 7.71313 8.92945 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016178 B = 0.003587 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.337611 B = 7803.294840 C = 8472.826150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.542 4.542 8 H 0.044 0.956 9 C 0.060 3.940 10 H 0.006 0.994 11 C -0.106 4.106 12 C -0.104 4.104 13 C 0.073 3.927 14 N -0.455 5.455 15 C 0.354 3.646 16 N -0.365 5.365 17 N -0.330 5.330 18 C 0.216 3.784 19 C -0.089 4.089 20 C -0.147 4.147 21 C -0.146 4.146 22 N -0.462 5.462 23 C 0.143 3.857 24 C -0.191 4.191 25 C -0.154 4.154 26 C -0.159 4.159 27 C 0.107 3.893 28 H 0.263 0.737 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.030 0.970 35 H 0.157 0.843 36 H 0.082 0.918 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.130 0.870 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.123 0.877 45 H 0.117 0.883 46 H 0.092 0.908 47 H 0.025 0.975 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.934 -24.983 -4.062 25.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.177 4.177 3 Si 0.777 3.223 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.581 4.581 8 H 0.063 0.937 9 C 0.041 3.959 10 H 0.024 0.976 11 C -0.144 4.144 12 C -0.142 4.142 13 C -0.054 4.054 14 N -0.180 5.180 15 C -0.004 4.004 16 N -0.208 5.208 17 N -0.169 5.169 18 C -0.052 4.052 19 C -0.110 4.110 20 C -0.185 4.185 21 C -0.185 4.185 22 N -0.155 5.155 23 C 0.022 3.978 24 C -0.210 4.210 25 C -0.190 4.190 26 C -0.197 4.197 27 C -0.020 4.020 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.048 0.952 35 H 0.174 0.826 36 H 0.100 0.900 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.091 0.909 40 H 0.118 0.882 41 H 0.148 0.852 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.141 0.859 45 H 0.135 0.865 46 H 0.110 0.890 47 H 0.043 0.957 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.105 -24.355 -3.938 24.761 hybrid contribution -0.004 1.586 0.098 1.589 sum -2.109 -22.769 -3.840 23.187 Atomic orbital electron populations 1.69981 1.06824 1.27344 1.50610 1.25598 0.95720 1.01911 0.94455 0.85715 0.78550 0.79330 0.78684 1.20029 1.20287 1.19889 1.21372 0.92810 0.92132 1.51752 0.93737 1.18586 0.92535 0.90173 0.94619 0.97560 1.21506 0.99227 0.96700 0.97014 1.21595 0.96699 0.93401 1.02465 1.22219 0.94778 1.00708 0.87669 1.58863 1.21146 0.99046 1.38967 1.22715 0.91334 0.86644 0.99692 1.74594 1.07383 1.15396 1.23444 1.73811 1.26902 0.97849 1.18317 1.24468 0.81597 0.97167 1.01980 1.20361 0.97990 0.85302 1.07336 1.23084 0.95173 1.01998 0.98223 1.23091 0.99808 1.03458 0.92112 1.46276 1.11931 1.09379 1.47887 1.21712 0.80187 1.02500 0.93377 1.22338 1.04346 1.01405 0.92949 1.23186 1.00773 0.94865 1.00224 1.23044 0.91060 1.02904 1.02661 1.21871 0.95236 0.86024 0.98896 0.92766 0.95758 0.91204 0.89512 0.91567 0.88806 0.95162 0.82595 0.89958 0.84647 0.84464 0.90908 0.88208 0.85246 0.91164 0.88759 0.85854 0.86455 0.88954 0.95660 0.93887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.14 11.36 21.45 0.24 -51.90 16 2 C 0.02 1.28 5.31 84.65 0.45 1.73 16 3 Si 0.95 44.67 29.54 68.60 2.03 46.70 16 4 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 7 C -0.54 -31.21 8.56 25.60 0.22 -30.99 16 8 H 0.04 2.59 7.74 -2.91 -0.02 2.57 16 9 C 0.06 3.12 2.26 -11.49 -0.03 3.10 16 10 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 11 C -0.11 -5.02 5.03 30.67 0.15 -4.86 16 12 C -0.10 -3.72 6.09 30.65 0.19 -3.54 16 13 C 0.07 2.48 5.37 86.33 0.46 2.94 16 14 N -0.46 -17.98 4.67 -706.15 -3.30 -21.27 16 15 C 0.35 13.49 6.84 260.11 1.78 15.26 16 16 N -0.36 -15.82 11.51 -58.01 -0.67 -16.49 16 17 N -0.33 -12.59 11.79 -49.54 -0.58 -13.17 16 18 C 0.22 6.20 7.59 137.64 1.04 7.25 16 19 C -0.09 -1.52 6.00 -11.54 -0.07 -1.59 16 20 C -0.15 -2.24 10.15 30.59 0.31 -1.93 16 21 C -0.15 -2.16 10.23 30.59 0.31 -1.84 16 22 N -0.46 -13.28 2.81 -514.88 -1.45 -14.72 16 23 C 0.14 2.76 6.30 86.38 0.54 3.30 16 24 C -0.19 -3.79 6.01 -10.79 -0.06 -3.85 16 25 C -0.15 -1.92 10.18 30.60 0.31 -1.61 16 26 C -0.16 -2.30 10.25 30.60 0.31 -1.99 16 27 C 0.11 5.09 4.17 86.33 0.36 5.45 16 28 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 3.66 6.16 -2.39 -0.01 3.65 16 31 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 32 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.09 2.53 7.10 -2.38 -0.02 2.52 16 34 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.16 1.48 7.55 -2.39 -0.02 1.46 16 36 H 0.08 1.75 7.92 -2.39 -0.02 1.73 16 37 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.10 1.96 7.10 -2.39 -0.02 1.94 16 41 H 0.13 1.43 7.20 -2.39 -0.02 1.42 16 42 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 43 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.12 0.86 8.03 -2.39 -0.02 0.84 16 45 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 47 H 0.02 1.27 8.07 -2.39 -0.02 1.26 16 48 H 0.04 2.19 8.10 -2.38 -0.02 2.17 16 Total: -1.00 -73.18 384.33 3.50 -69.69 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.93 Total: 14.33 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: 6.29 Total: -13.16 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -5.75 Total: -117.55 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -73.18 3.50 -69.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597400717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.743 kcal (2) G-P(sol) polarization free energy of solvation -73.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds