Wall clock time and date at job start Tue Mar 31 2020 10:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99787 * 2 1 4 4 H 1.48498 * 109.47490 * 270.00179 * 3 2 1 5 5 H 1.48500 * 109.46754 * 30.00586 * 3 2 1 6 6 H 1.48501 * 109.46902 * 149.99953 * 3 2 1 7 7 C 1.37876 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00108 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99807 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.47207 * 179.97438 * 9 7 2 11 11 C 1.46902 * 110.99276 * 66.04944 * 10 9 7 12 12 C 1.53001 * 109.46763 * 193.95290 * 11 10 9 13 13 C 1.53005 * 117.49879 * 243.75213 * 12 11 10 14 14 C 1.53001 * 117.50051 * 175.08949 * 12 11 10 15 15 C 1.38572 * 110.99855 * 190.00161 * 10 9 7 16 16 N 1.31225 * 126.47167 * 236.21671 * 15 10 9 17 17 N 1.28531 * 109.85548 * 180.26021 * 16 15 10 18 18 C 1.30290 * 110.05737 * 359.74960 * 17 16 15 19 19 C 1.50701 * 126.34819 * 180.02562 * 18 17 16 20 20 C 1.53005 * 117.49892 * 8.57254 * 19 18 17 21 21 C 1.53007 * 60.00087 * 252.51320 * 20 19 18 22 22 N 1.36452 * 126.47442 * 56.05225 * 15 10 9 23 23 C 1.46499 * 127.13749 * 0.02562 * 22 15 10 24 24 C 1.53000 * 109.46840 * 269.68569 * 23 22 15 25 25 C 1.53002 * 117.49654 * 243.74138 * 24 23 22 26 26 C 1.52999 * 117.49718 * 175.08794 * 24 23 22 27 27 H 0.96999 * 119.99987 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.46850 * 59.99791 * 9 7 2 29 29 H 1.08998 * 109.47488 * 300.00468 * 9 7 2 30 30 H 1.08991 * 109.47521 * 313.94959 * 11 10 9 31 31 H 1.08997 * 109.47249 * 73.96085 * 11 10 9 32 32 H 1.09003 * 115.55171 * 29.41824 * 12 11 10 33 33 H 1.08998 * 117.49827 * 359.97438 * 13 12 11 34 34 H 1.08995 * 117.49934 * 145.02378 * 13 12 11 35 35 H 1.08997 * 117.50006 * 214.97881 * 14 12 11 36 36 H 1.08998 * 117.49419 * 359.97438 * 14 12 11 37 37 H 1.08992 * 115.55144 * 154.29108 * 19 18 17 38 38 H 1.08997 * 117.49755 * 0.02562 * 20 19 18 39 39 H 1.08994 * 117.49615 * 145.02583 * 20 19 18 40 40 H 1.08994 * 117.49604 * 252.51138 * 21 20 19 41 41 H 1.09000 * 117.51351 * 107.47942 * 21 20 19 42 42 H 1.09002 * 109.47391 * 149.68239 * 23 22 15 43 43 H 1.09001 * 109.46813 * 29.68295 * 23 22 15 44 44 H 1.08997 * 115.55341 * 29.41678 * 24 23 22 45 45 H 1.09000 * 117.49888 * 0.02562 * 25 24 23 46 46 H 1.09005 * 117.49831 * 145.01661 * 25 24 23 47 47 H 1.08998 * 117.50075 * 214.97635 * 26 24 23 48 48 H 1.09004 * 117.49836 * 359.96930 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0013 -2.5790 -0.0010 11 6 3.6514 -3.2610 -1.2541 12 6 3.8581 -4.7680 -1.0894 13 6 4.9226 -5.4348 -1.9632 14 6 3.4377 -5.6700 -2.2515 15 6 5.3681 -2.6223 0.2232 16 7 6.2681 -3.1817 -0.5508 17 7 7.4368 -3.0386 -0.0353 18 6 7.3531 -2.3805 1.0860 19 6 8.4992 -2.0089 1.9913 20 6 9.9174 -2.2588 1.4744 21 6 9.3364 -3.1487 2.5751 22 7 6.0326 -2.0888 1.2888 23 6 5.4513 -1.3604 2.4192 24 6 5.4129 0.1348 2.0968 25 6 6.2564 1.0673 2.9686 26 6 4.7322 1.0584 3.1090 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6803 0.8889 29 1 3.8746 -0.6799 -0.8910 30 1 2.6077 -3.0620 -1.4970 31 1 4.2883 -2.8928 -2.0584 32 1 3.7229 -5.1534 -0.0788 33 1 5.4752 -4.7998 -2.6556 34 1 5.4873 -6.2590 -1.5276 35 1 3.0263 -6.6489 -2.0055 36 1 3.0134 -5.1898 -3.1332 37 1 8.3385 -1.1310 2.6169 38 1 10.0215 -2.6915 0.4795 39 1 10.6901 -1.5450 1.7598 40 1 9.7270 -3.0203 3.5846 41 1 9.0581 -4.1673 2.3046 42 1 6.0593 -1.5248 3.3088 43 1 4.4381 -1.7192 2.6001 44 1 5.3141 0.3857 1.0407 45 1 6.8390 0.6155 3.7715 46 1 6.7124 1.9318 2.4860 47 1 4.1860 1.9171 2.7188 48 1 4.3113 0.6008 4.0043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597403424.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:28 Heat of formation + Delta-G solvation = 174.964211 kcal Electronic energy + Delta-G solvation = -27920.870014 eV Core-core repulsion = 24401.548725 eV Total energy + Delta-G solvation = -3519.321289 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.55502 -38.04481 -37.75763 -37.00693 -35.59732 -33.86870 -32.64406 -29.47146 -28.18211 -27.39336 -25.66332 -23.82794 -22.50202 -22.44587 -21.96535 -21.81416 -21.49083 -20.47098 -19.65596 -19.36773 -17.58547 -16.85877 -15.93866 -15.80747 -15.74552 -15.03845 -14.74011 -14.54670 -14.27628 -14.17302 -13.77439 -13.48554 -13.27916 -12.60540 -12.39286 -12.15774 -11.95156 -11.83742 -11.63575 -11.54961 -11.17646 -11.15477 -11.02644 -10.92384 -10.88229 -10.66992 -10.58725 -10.46559 -10.12277 -10.06776 -9.86601 -9.80841 -9.68150 -9.48920 -9.40883 -8.94726 -8.72501 -7.46036 -6.23069 -4.23348 2.15250 2.62716 3.12345 3.18838 3.22280 3.26478 3.73782 3.89039 4.20452 4.24585 4.36763 4.43201 4.65704 4.70401 4.77300 4.87387 4.97609 5.02528 5.04381 5.09355 5.24834 5.40965 5.45788 5.48541 5.52802 5.53760 5.57855 5.58572 5.75573 5.90119 5.90429 5.93530 6.05798 6.07653 6.09780 6.13620 6.20397 6.25074 6.36420 6.41680 6.51454 6.54472 6.61899 6.70671 6.83725 7.04624 7.34548 7.48206 7.89334 8.39257 8.83597 9.29258 9.35532 10.88909 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.009471 B = 0.006745 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.695770 B = 4150.296495 C = 6664.648920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.078 3.922 3 Si 0.862 3.138 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.518 4.518 8 H 0.086 0.914 9 C 0.151 3.849 10 N -0.439 5.439 11 C 0.107 3.893 12 C -0.135 4.135 13 C -0.155 4.155 14 C -0.188 4.188 15 C 0.382 3.618 16 N -0.328 5.328 17 N -0.286 5.286 18 C 0.185 3.815 19 C -0.075 4.075 20 C -0.151 4.151 21 C -0.163 4.163 22 N -0.477 5.477 23 C 0.144 3.856 24 C -0.174 4.174 25 C -0.180 4.180 26 C -0.161 4.161 27 H 0.266 0.734 28 H 0.054 0.946 29 H -0.006 1.006 30 H 0.104 0.896 31 H 0.047 0.953 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.109 0.891 44 H 0.115 0.885 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.099 0.901 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.583 -1.945 6.373 16.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.125 4.125 3 Si 0.689 3.311 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.556 4.556 8 H 0.104 0.896 9 C 0.027 3.973 10 N -0.161 5.161 11 C -0.020 4.020 12 C -0.154 4.154 13 C -0.192 4.192 14 C -0.226 4.226 15 C 0.026 3.974 16 N -0.173 5.173 17 N -0.125 5.125 18 C -0.082 4.082 19 C -0.095 4.095 20 C -0.189 4.189 21 C -0.201 4.201 22 N -0.172 5.172 23 C 0.020 3.980 24 C -0.193 4.193 25 C -0.217 4.217 26 C -0.199 4.199 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.012 0.988 30 H 0.123 0.877 31 H 0.065 0.935 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.136 0.864 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.109 0.891 43 H 0.127 0.873 44 H 0.132 0.868 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.117 0.883 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 14.696 -2.804 5.571 15.965 hybrid contribution -0.184 2.115 0.583 2.201 sum 14.512 -0.689 6.154 15.778 Atomic orbital electron populations 1.69867 1.06073 1.27092 1.49782 1.24795 0.94673 0.98610 0.94440 0.87111 0.80912 0.84241 0.78805 1.20453 1.20959 1.17877 1.20867 0.87649 0.95208 1.51892 0.89582 1.20743 0.98168 0.81361 0.97045 1.58713 1.01716 1.19703 1.36010 1.21629 1.02497 0.90400 0.87437 1.22124 1.03836 0.93621 0.95788 1.22826 0.90676 1.02475 1.03229 1.22970 0.98751 1.00578 1.00251 1.23134 0.92104 0.96016 0.86114 1.74664 0.94091 1.25684 1.22868 1.73794 1.16681 1.15948 1.06059 1.23329 0.83401 1.03499 0.98003 1.19935 0.88106 1.00945 1.00554 1.22965 0.93378 1.02441 1.00097 1.23046 1.02578 0.96112 0.98375 1.45932 1.06890 1.44519 1.19905 1.21434 1.00930 0.89281 0.86326 1.22764 1.06309 0.91421 0.98781 1.23103 0.94112 1.02072 1.02367 1.22998 0.94590 1.01781 1.00509 0.92382 0.92826 0.98822 0.87747 0.93468 0.88264 0.88656 0.90066 0.89488 0.89110 0.86394 0.87336 0.88285 0.88272 0.88327 0.89118 0.87256 0.86760 0.88726 0.88857 0.88305 0.88161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 13.96 55.43 0.77 -24.89 16 2 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.86 19.62 27.47 -169.99 -4.67 14.95 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.25 -5.20 3.89 56.52 0.22 -4.98 16 7 C -0.52 -13.58 8.87 -34.44 -0.31 -13.88 16 8 H 0.09 2.48 7.47 -52.49 -0.39 2.08 16 9 C 0.15 3.43 3.34 -4.97 -0.02 3.41 16 10 N -0.44 -9.22 4.53 -175.88 -0.80 -10.02 16 11 C 0.11 2.14 4.79 -3.82 -0.02 2.12 16 12 C -0.13 -2.39 5.06 -90.62 -0.46 -2.85 16 13 C -0.15 -2.50 9.10 -26.69 -0.24 -2.74 16 14 C -0.19 -2.82 10.26 -26.69 -0.27 -3.10 16 15 C 0.38 7.63 6.82 -318.88 -2.18 5.45 16 16 N -0.33 -6.66 9.61 30.31 0.29 -6.37 16 17 N -0.29 -5.42 11.79 32.99 0.39 -5.03 16 18 C 0.18 3.03 7.59 -154.02 -1.17 1.86 16 19 C -0.07 -0.89 5.87 -91.76 -0.54 -1.43 16 20 C -0.15 -1.55 10.15 -26.72 -0.27 -1.82 16 21 C -0.16 -1.61 10.23 -26.72 -0.27 -1.88 16 22 N -0.48 -8.22 2.81 -114.08 -0.32 -8.54 16 23 C 0.14 2.09 5.40 -4.04 -0.02 2.07 16 24 C -0.17 -2.55 3.84 -90.62 -0.35 -2.90 16 25 C -0.18 -2.03 10.18 -26.70 -0.27 -2.30 16 26 C -0.16 -2.12 9.82 -26.70 -0.26 -2.38 16 27 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.05 1.15 2.17 -51.92 -0.11 1.03 16 29 H -0.01 -0.14 7.55 -51.93 -0.39 -0.54 16 30 H 0.10 2.23 6.60 -51.93 -0.34 1.89 16 31 H 0.05 0.96 7.48 -51.93 -0.39 0.57 16 32 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 33 H 0.09 1.61 8.03 -51.93 -0.42 1.20 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.11 1.29 7.92 -51.93 -0.41 0.88 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.09 1.04 7.67 -51.93 -0.40 0.64 16 43 H 0.11 1.76 7.71 -51.93 -0.40 1.36 16 44 H 0.11 2.05 6.11 -51.93 -0.32 1.73 16 45 H 0.09 0.86 8.03 -51.93 -0.42 0.44 16 46 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.10 1.40 7.46 -51.93 -0.39 1.02 16 48 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 378.97 15.07 5.71 5.71 Total: -1.00 -29.85 378.97 -13.29 -43.14 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -7.92 Total: 9.40 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -6.74 Total: -18.35 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.34 Total: -54.85 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.67 Total: 14.95 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.85 -13.29 -43.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597403424.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.103 kcal (2) G-P(sol) polarization free energy of solvation -29.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds