Wall clock time and date at job start Tue Mar 31 2020 10:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99787 * 2 1 4 4 H 1.48498 * 109.47490 * 270.00179 * 3 2 1 5 5 H 1.48500 * 109.46754 * 30.00586 * 3 2 1 6 6 H 1.48501 * 109.46902 * 149.99953 * 3 2 1 7 7 C 1.37876 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00108 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99807 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.47207 * 179.97438 * 9 7 2 11 11 C 1.46902 * 110.99276 * 66.04944 * 10 9 7 12 12 C 1.53001 * 109.46763 * 193.95290 * 11 10 9 13 13 C 1.53005 * 117.49879 * 243.75213 * 12 11 10 14 14 C 1.53001 * 117.50051 * 175.08949 * 12 11 10 15 15 C 1.38572 * 110.99855 * 190.00161 * 10 9 7 16 16 N 1.31225 * 126.47167 * 236.21671 * 15 10 9 17 17 N 1.28531 * 109.85548 * 180.26021 * 16 15 10 18 18 C 1.30290 * 110.05737 * 359.74960 * 17 16 15 19 19 C 1.50701 * 126.34819 * 180.02562 * 18 17 16 20 20 C 1.53005 * 117.49892 * 8.57254 * 19 18 17 21 21 C 1.53007 * 60.00087 * 252.51320 * 20 19 18 22 22 N 1.36452 * 126.47442 * 56.05225 * 15 10 9 23 23 C 1.46499 * 127.13749 * 0.02562 * 22 15 10 24 24 C 1.53000 * 109.46840 * 269.68569 * 23 22 15 25 25 C 1.53002 * 117.49654 * 243.74138 * 24 23 22 26 26 C 1.52999 * 117.49718 * 175.08794 * 24 23 22 27 27 H 0.96999 * 119.99987 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.46850 * 59.99791 * 9 7 2 29 29 H 1.08998 * 109.47488 * 300.00468 * 9 7 2 30 30 H 1.08991 * 109.47521 * 313.94959 * 11 10 9 31 31 H 1.08997 * 109.47249 * 73.96085 * 11 10 9 32 32 H 1.09003 * 115.55171 * 29.41824 * 12 11 10 33 33 H 1.08998 * 117.49827 * 359.97438 * 13 12 11 34 34 H 1.08995 * 117.49934 * 145.02378 * 13 12 11 35 35 H 1.08997 * 117.50006 * 214.97881 * 14 12 11 36 36 H 1.08998 * 117.49419 * 359.97438 * 14 12 11 37 37 H 1.08992 * 115.55144 * 154.29108 * 19 18 17 38 38 H 1.08997 * 117.49755 * 0.02562 * 20 19 18 39 39 H 1.08994 * 117.49615 * 145.02583 * 20 19 18 40 40 H 1.08994 * 117.49604 * 252.51138 * 21 20 19 41 41 H 1.09000 * 117.51351 * 107.47942 * 21 20 19 42 42 H 1.09002 * 109.47391 * 149.68239 * 23 22 15 43 43 H 1.09001 * 109.46813 * 29.68295 * 23 22 15 44 44 H 1.08997 * 115.55341 * 29.41678 * 24 23 22 45 45 H 1.09000 * 117.49888 * 0.02562 * 25 24 23 46 46 H 1.09005 * 117.49831 * 145.01661 * 25 24 23 47 47 H 1.08998 * 117.50075 * 214.97635 * 26 24 23 48 48 H 1.09004 * 117.49836 * 359.96930 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0013 -2.5790 -0.0010 11 6 3.6514 -3.2610 -1.2541 12 6 3.8581 -4.7680 -1.0894 13 6 4.9226 -5.4348 -1.9632 14 6 3.4377 -5.6700 -2.2515 15 6 5.3681 -2.6223 0.2232 16 7 6.2681 -3.1817 -0.5508 17 7 7.4368 -3.0386 -0.0353 18 6 7.3531 -2.3805 1.0860 19 6 8.4992 -2.0089 1.9913 20 6 9.9174 -2.2588 1.4744 21 6 9.3364 -3.1487 2.5751 22 7 6.0326 -2.0888 1.2888 23 6 5.4513 -1.3604 2.4192 24 6 5.4129 0.1348 2.0968 25 6 6.2564 1.0673 2.9686 26 6 4.7322 1.0584 3.1090 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6803 0.8889 29 1 3.8746 -0.6799 -0.8910 30 1 2.6077 -3.0620 -1.4970 31 1 4.2883 -2.8928 -2.0584 32 1 3.7229 -5.1534 -0.0788 33 1 5.4752 -4.7998 -2.6556 34 1 5.4873 -6.2590 -1.5276 35 1 3.0263 -6.6489 -2.0055 36 1 3.0134 -5.1898 -3.1332 37 1 8.3385 -1.1310 2.6169 38 1 10.0215 -2.6915 0.4795 39 1 10.6901 -1.5450 1.7598 40 1 9.7270 -3.0203 3.5846 41 1 9.0581 -4.1673 2.3046 42 1 6.0593 -1.5248 3.3088 43 1 4.4381 -1.7192 2.6001 44 1 5.3141 0.3857 1.0407 45 1 6.8390 0.6155 3.7715 46 1 6.7124 1.9318 2.4860 47 1 4.1860 1.9171 2.7188 48 1 4.3113 0.6008 4.0043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597403424.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:27 Heat of formation + Delta-G solvation = 161.497113 kcal Electronic energy + Delta-G solvation = -27921.453992 eV Core-core repulsion = 24401.548725 eV Total energy + Delta-G solvation = -3519.905267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.95107 -39.51497 -38.85667 -37.95130 -37.06033 -35.17523 -34.68157 -31.09149 -29.78440 -28.66294 -27.34917 -24.97139 -23.79353 -23.41280 -23.21012 -23.12183 -22.74303 -21.81562 -20.94016 -20.73936 -19.30063 -18.32752 -17.37812 -17.20368 -16.98479 -16.41185 -16.22216 -15.86866 -15.59834 -15.37539 -15.10698 -14.96682 -14.62625 -14.33675 -13.82721 -13.70730 -13.16403 -13.09920 -12.88026 -12.85412 -12.55673 -12.39479 -12.31964 -12.29286 -12.17416 -12.10726 -11.81837 -11.71650 -11.50047 -11.44925 -11.25729 -11.11186 -11.05753 -10.97760 -10.85551 -10.74100 -10.43483 -9.00707 -8.34684 -6.40163 0.80104 1.26910 1.29868 1.33141 1.39412 1.85078 2.27020 2.71321 2.75261 2.98539 3.00618 3.05101 3.32269 3.62114 3.65550 3.80582 3.87421 3.92891 3.99668 4.05535 4.07372 4.08871 4.17051 4.21043 4.31427 4.41586 4.45053 4.53929 4.61284 4.73582 4.78444 4.83716 4.84248 4.87513 4.92454 4.95908 4.99703 5.06750 5.07693 5.08944 5.20489 5.22809 5.30534 5.34267 5.35471 5.35939 5.65666 5.84071 6.15953 6.49251 6.64677 7.22200 7.86467 8.80445 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.009471 B = 0.006745 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.695770 B = 4150.296495 C = 6664.648920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.026 3.974 3 Si 0.925 3.075 4 H -0.285 1.285 5 H -0.277 1.277 6 H -0.223 1.223 7 C -0.518 4.518 8 H 0.046 0.954 9 C 0.166 3.834 10 N -0.446 5.446 11 C 0.115 3.885 12 C -0.153 4.153 13 C -0.144 4.144 14 C -0.166 4.166 15 C 0.358 3.642 16 N -0.342 5.342 17 N -0.321 5.321 18 C 0.205 3.795 19 C -0.094 4.094 20 C -0.145 4.145 21 C -0.145 4.145 22 N -0.476 5.476 23 C 0.143 3.857 24 C -0.203 4.203 25 C -0.142 4.142 26 C -0.170 4.170 27 H 0.269 0.731 28 H 0.074 0.926 29 H -0.023 1.023 30 H 0.079 0.921 31 H 0.036 0.964 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.147 0.853 38 H 0.085 0.915 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.079 0.921 42 H 0.132 0.868 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.129 0.871 46 H 0.100 0.900 47 H 0.086 0.914 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.930 -1.037 8.803 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.173 4.173 3 Si 0.748 3.252 4 H -0.212 1.212 5 H -0.203 1.203 6 H -0.146 1.146 7 C -0.557 4.557 8 H 0.065 0.935 9 C 0.040 3.960 10 N -0.169 5.169 11 C -0.012 4.012 12 C -0.172 4.172 13 C -0.181 4.181 14 C -0.204 4.204 15 C 0.000 4.000 16 N -0.187 5.187 17 N -0.159 5.159 18 C -0.063 4.063 19 C -0.115 4.115 20 C -0.182 4.182 21 C -0.183 4.183 22 N -0.171 5.171 23 C 0.021 3.979 24 C -0.222 4.222 25 C -0.179 4.179 26 C -0.208 4.208 27 H 0.078 0.922 28 H 0.092 0.908 29 H -0.005 1.005 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.128 0.872 36 H 0.114 0.886 37 H 0.165 0.835 38 H 0.104 0.896 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.098 0.902 42 H 0.149 0.851 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.147 0.853 46 H 0.119 0.881 47 H 0.104 0.896 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 18.069 -1.914 8.011 19.857 hybrid contribution -1.172 1.757 -0.177 2.120 sum 16.896 -0.157 7.835 18.625 Atomic orbital electron populations 1.70007 1.07933 1.28223 1.51406 1.25599 0.95398 1.02392 0.93941 0.86127 0.81004 0.79356 0.78689 1.21170 1.20260 1.14618 1.20968 0.89565 0.93823 1.51306 0.93538 1.20501 0.95630 0.82888 0.96950 1.58655 1.03196 1.18561 1.36460 1.21472 1.00480 0.92181 0.87047 1.21960 1.06634 0.92299 0.96278 1.22742 0.91118 1.02027 1.02207 1.23081 0.97823 1.00695 0.98762 1.23001 0.91488 0.97896 0.87586 1.74566 0.94726 1.25811 1.23607 1.73753 1.16095 1.18251 1.07841 1.24282 0.84080 1.00644 0.97282 1.20313 0.87042 1.03082 1.01042 1.23048 0.92903 1.02964 0.99332 1.23120 1.00795 0.94439 0.99985 1.46159 1.07060 1.44107 1.19724 1.21615 1.00564 0.88982 0.86719 1.22598 1.10340 0.91864 0.97421 1.23243 0.92952 1.00510 1.01160 1.23103 0.96554 1.00802 1.00321 0.92210 0.90843 1.00542 0.90314 0.94598 0.89312 0.89693 0.89130 0.87217 0.88619 0.83547 0.89622 0.85110 0.84748 0.90210 0.85058 0.89451 0.90386 0.85296 0.88148 0.89585 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.14 13.96 21.45 0.30 -55.84 16 2 C 0.03 1.44 5.47 84.65 0.46 1.90 16 3 Si 0.92 41.34 27.47 68.60 1.88 43.22 16 4 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.22 -8.75 3.89 99.48 0.39 -8.36 16 7 C -0.52 -28.70 8.87 25.60 0.23 -28.47 16 8 H 0.05 2.88 7.47 -2.91 -0.02 2.86 16 9 C 0.17 7.82 3.34 85.56 0.29 8.11 16 10 N -0.45 -19.73 4.53 -710.35 -3.22 -22.95 16 11 C 0.12 4.92 4.79 86.30 0.41 5.33 16 12 C -0.15 -5.63 5.06 -10.79 -0.05 -5.69 16 13 C -0.14 -4.68 9.10 30.62 0.28 -4.40 16 14 C -0.17 -4.97 10.26 30.62 0.31 -4.66 16 15 C 0.36 14.61 6.82 260.11 1.77 16.39 16 16 N -0.34 -14.23 9.61 -58.01 -0.56 -14.79 16 17 N -0.32 -12.13 11.79 -49.54 -0.58 -12.72 16 18 C 0.20 6.39 7.59 137.64 1.04 7.44 16 19 C -0.09 -1.87 5.87 -11.53 -0.07 -1.94 16 20 C -0.14 -2.44 10.15 30.60 0.31 -2.13 16 21 C -0.15 -2.28 10.23 30.60 0.31 -1.97 16 22 N -0.48 -16.00 2.81 -514.85 -1.44 -17.45 16 23 C 0.14 3.89 5.40 86.38 0.47 4.36 16 24 C -0.20 -5.49 3.84 -10.79 -0.04 -5.53 16 25 C -0.14 -2.53 10.18 30.62 0.31 -2.22 16 26 C -0.17 -3.96 9.82 30.62 0.30 -3.65 16 27 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 28 H 0.07 3.19 2.17 -2.38 -0.01 3.19 16 29 H -0.02 -1.16 7.55 -2.39 -0.02 -1.18 16 30 H 0.08 3.68 6.60 -2.39 -0.02 3.67 16 31 H 0.04 1.57 7.48 -2.39 -0.02 1.55 16 32 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 33 H 0.08 2.95 8.03 -2.39 -0.02 2.93 16 34 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.15 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.09 1.88 7.92 -2.39 -0.02 1.86 16 39 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.13 2.45 7.67 -2.39 -0.02 2.43 16 43 H 0.09 2.76 7.71 -2.39 -0.02 2.74 16 44 H 0.08 2.71 6.11 -2.39 -0.01 2.70 16 45 H 0.13 1.46 8.03 -2.39 -0.02 1.44 16 46 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 47 H 0.09 2.22 7.46 -2.39 -0.02 2.21 16 48 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -70.48 378.97 3.35 -67.13 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.63 Total: 30.52 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: 6.34 Total: -17.13 kcal Atomic # 7 Polarization: -118.23 SS G_CDS: -5.50 Total: -123.74 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 1.88 Total: 43.22 kcal Total: -70.48 3.35 -67.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597403424.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.623 kcal (2) G-P(sol) polarization free energy of solvation -70.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds