Wall clock time and date at job start Tue Mar 31 2020 12:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38259 * 120.00193 * 2 1 4 4 C 1.38215 * 119.99846 * 180.02562 * 3 2 1 5 5 C 1.38252 * 120.00146 * 0.02562 * 4 3 2 6 6 C 1.38213 * 120.00155 * 359.95504 * 5 4 3 7 7 C 1.50700 * 120.00370 * 180.02562 * 6 5 4 8 8 H 1.08993 * 109.47594 * 159.99716 * 7 6 5 9 9 N 1.46906 * 109.47130 * 39.99649 * 7 6 5 10 10 C 1.46896 * 110.99959 * 155.90927 * 9 7 6 11 11 C 1.53038 * 109.45992 * 154.59785 * 10 9 7 12 12 C 1.53189 * 109.31347 * 181.38642 * 11 10 9 13 13 N 1.46924 * 108.77876 * 305.36683 * 12 11 10 14 14 C 1.36936 * 120.63430 * 233.58886 * 13 12 11 15 15 H 1.08004 * 119.99503 * 28.81852 * 14 13 12 16 16 C 1.38811 * 120.00230 * 208.82024 * 14 13 12 17 17 N 1.31621 * 119.99654 * 17.21194 * 16 14 13 18 18 Si 1.86794 * 119.99952 * 197.20793 * 16 14 13 19 19 H 1.48504 * 109.46898 * 90.00467 * 18 16 14 20 20 H 1.48503 * 109.47243 * 209.99972 * 18 16 14 21 21 H 1.48497 * 109.47551 * 330.00187 * 18 16 14 22 22 C 1.46922 * 118.73761 * 53.60691 * 13 12 11 23 23 C 1.53041 * 109.46192 * 274.66911 * 10 9 7 24 24 C 1.52999 * 109.46719 * 279.99988 * 7 6 5 25 25 C 1.52996 * 109.47223 * 297.39652 * 24 7 6 26 26 C 1.53001 * 109.47133 * 57.39752 * 24 7 6 27 27 C 1.38213 * 119.99728 * 180.20688 * 2 1 3 28 28 H 1.08995 * 109.47023 * 89.99696 * 1 2 3 29 29 H 1.08995 * 109.47242 * 210.00409 * 1 2 3 30 30 H 1.09007 * 109.46773 * 329.99940 * 1 2 3 31 31 H 1.07997 * 119.99932 * 359.97438 * 3 2 1 32 32 H 1.07999 * 119.99590 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.00352 * 179.97438 * 5 4 3 34 34 H 1.00903 * 110.99789 * 31.95538 * 9 7 6 35 35 H 1.09001 * 109.44795 * 34.63692 * 10 9 7 36 36 H 1.09001 * 109.50121 * 301.34193 * 11 10 9 37 37 H 1.09006 * 109.49500 * 61.43658 * 11 10 9 38 38 H 1.09004 * 109.58720 * 185.57847 * 12 11 10 39 39 H 1.09001 * 109.58779 * 65.15577 * 12 11 10 40 40 H 0.96996 * 119.99426 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.59213 * 186.60863 * 22 13 12 42 42 H 1.08999 * 109.70618 * 66.24976 * 22 13 12 43 43 H 1.08997 * 109.49175 * 298.56406 * 23 10 9 44 44 H 1.09000 * 109.49433 * 58.63034 * 23 10 9 45 45 H 1.09002 * 109.46942 * 177.39419 * 24 7 6 46 46 H 1.08995 * 109.47361 * 180.02562 * 25 24 7 47 47 H 1.09001 * 109.47098 * 299.99995 * 25 24 7 48 48 H 1.09002 * 109.47351 * 60.00018 * 25 24 7 49 49 H 1.08998 * 109.47176 * 60.00257 * 26 24 7 50 50 H 1.09006 * 109.46895 * 180.02562 * 26 24 7 51 51 H 1.09002 * 109.46935 * 299.99672 * 26 24 7 52 52 H 1.08000 * 120.00427 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 3.5806 -1.1970 -0.0012 7 6 4.3340 -2.5022 -0.0018 8 1 3.6797 -3.2996 0.3501 9 7 5.4984 -2.3959 0.8876 10 6 5.9174 -3.7197 1.3669 11 6 7.4041 -3.6842 1.7280 12 6 7.8456 -5.0750 2.1945 13 7 6.9683 -5.5066 3.2912 14 6 7.4958 -5.9148 4.4872 15 1 8.4416 -5.5168 4.8242 16 6 6.8150 -6.8402 5.2663 17 7 5.8612 -7.5742 4.7334 18 14 7.2525 -7.0438 7.0708 19 1 6.4261 -6.1192 7.8879 20 1 6.9889 -8.4441 7.4892 21 1 8.6902 -6.7300 7.2701 22 6 5.5144 -5.4922 3.0803 23 6 5.0990 -4.0967 2.6040 24 6 4.8049 -2.8185 -1.4227 25 6 3.5897 -2.9932 -2.3357 26 6 5.6709 -1.6685 -1.9409 27 6 2.1980 -1.1970 -0.0043 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6584 2.1326 -0.0004 32 1 4.1205 2.1326 -0.0010 33 1 5.3517 -0.0002 -0.0024 34 1 5.3079 -1.7753 1.6601 35 1 5.7517 -4.4587 0.5829 36 1 7.9844 -3.3929 0.8525 37 1 7.5667 -2.9632 2.5292 38 1 8.8764 -5.0323 2.5462 39 1 7.7688 -5.7796 1.3663 40 1 5.3852 -8.2205 5.2780 41 1 5.0070 -5.7247 4.0165 42 1 5.2452 -6.2310 2.3255 43 1 5.2834 -3.3718 3.3968 44 1 4.0385 -4.0984 2.3519 45 1 5.3893 -3.7386 -1.4155 46 1 3.9252 -3.2190 -3.3479 47 1 2.9728 -3.8125 -1.9666 48 1 3.0054 -2.0731 -2.3430 49 1 6.5367 -1.5440 -1.2905 50 1 6.0060 -1.8937 -2.9534 51 1 5.0866 -0.7483 -1.9482 52 1 1.6581 -2.1323 -0.0081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599027105.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:09 Heat of formation + Delta-G solvation = 26.346493 kcal Electronic energy + Delta-G solvation = -27518.069684 eV Core-core repulsion = 24095.844190 eV Total energy + Delta-G solvation = -3422.225494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.12577 -38.12519 -36.50368 -33.89350 -32.71979 -31.85872 -30.96814 -29.81334 -29.00124 -27.47749 -26.54648 -25.53771 -24.03111 -22.46259 -22.07163 -21.39091 -21.21731 -19.14870 -18.92977 -16.91400 -16.44407 -15.72195 -15.50776 -15.15720 -14.79444 -14.44801 -14.18161 -13.87062 -13.79297 -13.57166 -13.41536 -13.20063 -13.03343 -12.87765 -12.63312 -12.42865 -12.22900 -12.12182 -11.95645 -11.84826 -11.45432 -11.26963 -11.08200 -11.00535 -10.96343 -10.79450 -10.71973 -10.70710 -10.37602 -10.21451 -10.11332 -9.97442 -9.64621 -9.49286 -8.82205 -8.58293 -8.47213 -7.99767 -6.63208 -5.76809 -3.19365 1.30698 1.34468 3.38932 3.45825 3.47046 3.69445 4.32193 4.51768 4.61615 4.76217 4.85149 5.01300 5.09618 5.14270 5.24084 5.33985 5.37198 5.40035 5.44748 5.46214 5.52534 5.62341 5.63477 5.67357 5.69896 5.75175 5.86502 5.94559 5.97607 5.99824 6.03969 6.09801 6.18878 6.19658 6.37210 6.39296 6.44745 6.45473 6.49816 6.51740 6.60006 6.62076 6.71253 6.72492 6.87029 6.97758 7.05003 7.35920 7.43481 7.62962 7.71812 7.82267 8.48189 9.24038 9.87780 10.45261 11.31692 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017186 B = 0.003147 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.880457 B = 8895.664889 C = 9498.472303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.126 4.126 4 C -0.123 4.123 5 C -0.104 4.104 6 C -0.072 4.072 7 C 0.130 3.870 8 H 0.051 0.949 9 N -0.679 5.679 10 C 0.096 3.904 11 C -0.116 4.116 12 C 0.145 3.855 13 N -0.592 5.592 14 C -0.251 4.251 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.903 5.903 18 Si 0.901 3.099 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.177 3.823 23 C -0.166 4.166 24 C -0.078 4.078 25 C -0.149 4.149 26 C -0.142 4.142 27 C -0.113 4.113 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.132 0.868 34 H 0.339 0.661 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.015 0.985 40 H 0.253 0.747 41 H 0.083 0.917 42 H 0.016 0.984 43 H 0.055 0.945 44 H 0.042 0.958 45 H 0.072 0.928 46 H 0.052 0.948 47 H 0.051 0.949 48 H 0.055 0.945 49 H 0.068 0.932 50 H 0.041 0.959 51 H 0.054 0.946 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.929 15.877 -13.437 22.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.144 4.144 4 C -0.141 4.141 5 C -0.122 4.122 6 C -0.072 4.072 7 C 0.020 3.980 8 H 0.069 0.931 9 N -0.309 5.309 10 C -0.013 4.013 11 C -0.155 4.155 12 C 0.018 3.982 13 N -0.315 5.315 14 C -0.381 4.381 15 H 0.083 0.917 16 C -0.197 4.197 17 N -0.548 5.548 18 Si 0.731 3.269 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.204 1.204 22 C 0.050 3.950 23 C -0.207 4.207 24 C -0.097 4.097 25 C -0.207 4.207 26 C -0.199 4.199 27 C -0.132 4.132 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.033 0.967 40 H 0.063 0.937 41 H 0.101 0.899 42 H 0.034 0.966 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.091 0.909 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.087 0.913 50 H 0.060 0.940 51 H 0.073 0.927 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.546 15.742 -13.870 22.296 hybrid contribution -0.665 -0.393 1.618 1.793 sum -8.210 15.349 -12.252 21.286 Atomic orbital electron populations 1.20773 0.91475 1.02660 1.02090 1.19841 0.95849 0.93147 1.00305 1.20978 0.94366 0.97230 1.01832 1.21143 0.94199 0.98075 1.00650 1.21140 1.00677 0.91397 0.98985 1.19915 0.93228 0.95107 0.98995 1.20468 0.90499 0.92920 0.94098 0.93132 1.60801 1.34840 1.12706 1.22533 1.21526 0.95656 0.88669 0.95450 1.21962 0.94341 0.99453 0.99778 1.20928 0.94411 0.92002 0.90858 1.44045 1.00593 1.76035 1.10802 1.19198 1.06164 1.17918 0.94818 0.91741 1.25056 0.99688 0.95831 0.99098 1.70043 1.26510 1.23756 1.34442 0.86301 0.78156 0.76878 0.85520 1.21508 1.21793 1.20405 1.20639 0.84661 0.89507 1.00153 1.22844 0.97663 1.02426 0.97770 1.21012 0.96321 0.99426 0.92973 1.21881 0.98044 1.01551 0.99184 1.21878 1.00313 0.97921 0.99767 1.20931 0.93627 0.97480 1.01157 0.91404 0.91606 0.91747 0.86606 0.86336 0.84971 0.84241 0.91327 0.92657 0.92591 0.92794 0.96662 0.93716 0.89903 0.96608 0.92658 0.93907 0.90936 0.92852 0.93013 0.92586 0.91260 0.93992 0.92685 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 2 C -0.09 -0.94 5.88 -104.62 -0.62 -1.55 16 3 C -0.13 -1.24 9.70 -39.58 -0.38 -1.63 16 4 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 5 C -0.10 -1.15 6.73 -39.59 -0.27 -1.42 16 6 C -0.07 -0.84 3.60 -104.62 -0.38 -1.22 16 7 C 0.13 1.63 1.90 -68.86 -0.13 1.50 16 8 H 0.05 0.71 7.00 -51.93 -0.36 0.34 16 9 N -0.68 -9.33 4.78 -100.91 -0.48 -9.82 16 10 C 0.10 1.60 2.23 -67.67 -0.15 1.45 16 11 C -0.12 -2.03 5.69 -26.61 -0.15 -2.18 16 12 C 0.14 3.07 6.52 -3.71 -0.02 3.05 16 13 N -0.59 -14.95 2.99 -172.32 -0.52 -15.46 16 14 C -0.25 -6.97 9.57 -15.06 -0.14 -7.12 16 15 H 0.06 1.76 7.89 -52.48 -0.41 1.35 16 16 C 0.00 0.05 4.90 -17.43 -0.09 -0.03 16 17 N -0.90 -26.47 11.26 55.49 0.63 -25.84 16 18 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 C 0.18 4.25 5.30 -3.71 -0.02 4.23 16 23 C -0.17 -3.17 5.31 -26.61 -0.14 -3.31 16 24 C -0.08 -0.92 2.80 -90.62 -0.25 -1.18 16 25 C -0.15 -1.57 8.85 37.16 0.33 -1.24 16 26 C -0.14 -1.58 7.88 37.16 0.29 -1.28 16 27 C -0.11 -1.28 8.37 -39.58 -0.33 -1.61 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 30 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.13 1.46 6.89 -52.49 -0.36 1.10 16 34 H 0.34 4.77 7.77 -39.29 -0.31 4.47 16 35 H 0.07 1.20 7.03 -51.93 -0.37 0.84 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.05 1.13 7.93 -51.93 -0.41 0.71 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.08 2.24 6.12 -51.93 -0.32 1.92 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.04 0.76 7.43 -51.93 -0.39 0.38 16 45 H 0.07 0.95 7.33 -51.93 -0.38 0.57 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.59 6.68 -51.93 -0.35 0.25 16 49 H 0.07 0.83 7.62 -51.93 -0.40 0.44 16 50 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.05 0.60 5.62 -51.93 -0.29 0.31 16 52 H 0.12 1.25 8.04 -52.49 -0.42 0.83 16 LS Contribution 392.47 15.07 5.91 5.91 Total: -1.00 -28.85 392.47 -11.37 -40.22 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -9.39 Total: 3.85 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -2.49 Total: -15.73 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: -0.37 Total: -51.12 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.85 -11.37 -40.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599027105.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.564 kcal (2) G-P(sol) polarization free energy of solvation -28.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds