Wall clock time and date at job start Tue Mar 31 2020 12:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38259 * 120.00193 * 2 1 4 4 C 1.38215 * 119.99846 * 180.02562 * 3 2 1 5 5 C 1.38252 * 120.00146 * 0.02562 * 4 3 2 6 6 C 1.38213 * 120.00155 * 359.95504 * 5 4 3 7 7 C 1.50700 * 120.00370 * 180.02562 * 6 5 4 8 8 H 1.08993 * 109.47594 * 159.99716 * 7 6 5 9 9 N 1.46906 * 109.47130 * 39.99649 * 7 6 5 10 10 C 1.46896 * 110.99959 * 155.90927 * 9 7 6 11 11 C 1.53038 * 109.45992 * 154.59785 * 10 9 7 12 12 C 1.53189 * 109.31347 * 181.38642 * 11 10 9 13 13 N 1.46924 * 108.77876 * 305.36683 * 12 11 10 14 14 C 1.36936 * 120.63430 * 233.58886 * 13 12 11 15 15 H 1.08004 * 119.99503 * 28.81852 * 14 13 12 16 16 C 1.38811 * 120.00230 * 208.82024 * 14 13 12 17 17 N 1.31621 * 119.99654 * 17.21194 * 16 14 13 18 18 Si 1.86794 * 119.99952 * 197.20793 * 16 14 13 19 19 H 1.48504 * 109.46898 * 90.00467 * 18 16 14 20 20 H 1.48503 * 109.47243 * 209.99972 * 18 16 14 21 21 H 1.48497 * 109.47551 * 330.00187 * 18 16 14 22 22 C 1.46922 * 118.73761 * 53.60691 * 13 12 11 23 23 C 1.53041 * 109.46192 * 274.66911 * 10 9 7 24 24 C 1.52999 * 109.46719 * 279.99988 * 7 6 5 25 25 C 1.52996 * 109.47223 * 297.39652 * 24 7 6 26 26 C 1.53001 * 109.47133 * 57.39752 * 24 7 6 27 27 C 1.38213 * 119.99728 * 180.20688 * 2 1 3 28 28 H 1.08995 * 109.47023 * 89.99696 * 1 2 3 29 29 H 1.08995 * 109.47242 * 210.00409 * 1 2 3 30 30 H 1.09007 * 109.46773 * 329.99940 * 1 2 3 31 31 H 1.07997 * 119.99932 * 359.97438 * 3 2 1 32 32 H 1.07999 * 119.99590 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.00352 * 179.97438 * 5 4 3 34 34 H 1.00903 * 110.99789 * 31.95538 * 9 7 6 35 35 H 1.09001 * 109.44795 * 34.63692 * 10 9 7 36 36 H 1.09001 * 109.50121 * 301.34193 * 11 10 9 37 37 H 1.09006 * 109.49500 * 61.43658 * 11 10 9 38 38 H 1.09004 * 109.58720 * 185.57847 * 12 11 10 39 39 H 1.09001 * 109.58779 * 65.15577 * 12 11 10 40 40 H 0.96996 * 119.99426 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.59213 * 186.60863 * 22 13 12 42 42 H 1.08999 * 109.70618 * 66.24976 * 22 13 12 43 43 H 1.08997 * 109.49175 * 298.56406 * 23 10 9 44 44 H 1.09000 * 109.49433 * 58.63034 * 23 10 9 45 45 H 1.09002 * 109.46942 * 177.39419 * 24 7 6 46 46 H 1.08995 * 109.47361 * 180.02562 * 25 24 7 47 47 H 1.09001 * 109.47098 * 299.99995 * 25 24 7 48 48 H 1.09002 * 109.47351 * 60.00018 * 25 24 7 49 49 H 1.08998 * 109.47176 * 60.00257 * 26 24 7 50 50 H 1.09006 * 109.46895 * 180.02562 * 26 24 7 51 51 H 1.09002 * 109.46935 * 299.99672 * 26 24 7 52 52 H 1.08000 * 120.00427 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 3.5806 -1.1970 -0.0012 7 6 4.3340 -2.5022 -0.0018 8 1 3.6797 -3.2996 0.3501 9 7 5.4984 -2.3959 0.8876 10 6 5.9174 -3.7197 1.3669 11 6 7.4041 -3.6842 1.7280 12 6 7.8456 -5.0750 2.1945 13 7 6.9683 -5.5066 3.2912 14 6 7.4958 -5.9148 4.4872 15 1 8.4416 -5.5168 4.8242 16 6 6.8150 -6.8402 5.2663 17 7 5.8612 -7.5742 4.7334 18 14 7.2525 -7.0438 7.0708 19 1 6.4261 -6.1192 7.8879 20 1 6.9889 -8.4441 7.4892 21 1 8.6902 -6.7300 7.2701 22 6 5.5144 -5.4922 3.0803 23 6 5.0990 -4.0967 2.6040 24 6 4.8049 -2.8185 -1.4227 25 6 3.5897 -2.9932 -2.3357 26 6 5.6709 -1.6685 -1.9409 27 6 2.1980 -1.1970 -0.0043 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6584 2.1326 -0.0004 32 1 4.1205 2.1326 -0.0010 33 1 5.3517 -0.0002 -0.0024 34 1 5.3079 -1.7753 1.6601 35 1 5.7517 -4.4587 0.5829 36 1 7.9844 -3.3929 0.8525 37 1 7.5667 -2.9632 2.5292 38 1 8.8764 -5.0323 2.5462 39 1 7.7688 -5.7796 1.3663 40 1 5.3852 -8.2205 5.2780 41 1 5.0070 -5.7247 4.0165 42 1 5.2452 -6.2310 2.3255 43 1 5.2834 -3.3718 3.3968 44 1 4.0385 -4.0984 2.3519 45 1 5.3893 -3.7386 -1.4155 46 1 3.9252 -3.2190 -3.3479 47 1 2.9728 -3.8125 -1.9666 48 1 3.0054 -2.0731 -2.3430 49 1 6.5367 -1.5440 -1.2905 50 1 6.0060 -1.8937 -2.9534 51 1 5.0866 -0.7483 -1.9482 52 1 1.6581 -2.1323 -0.0081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599027105.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:08 Heat of formation + Delta-G solvation = 12.964138 kcal Electronic energy + Delta-G solvation = -27518.649987 eV Core-core repulsion = 24095.844190 eV Total energy + Delta-G solvation = -3422.805796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.04816 -39.50151 -37.74801 -35.45985 -33.62153 -33.36228 -32.01331 -31.53597 -30.52975 -28.30577 -27.34389 -27.02790 -25.54243 -23.77649 -23.42342 -22.83768 -22.13791 -20.77764 -19.87805 -18.79888 -17.39880 -16.93788 -16.57231 -16.51235 -16.22077 -15.60652 -15.38054 -15.31344 -15.01816 -14.80666 -14.67465 -14.50472 -14.26638 -14.07969 -13.86825 -13.61054 -13.19170 -13.09172 -12.98917 -12.89983 -12.82537 -12.66289 -12.60986 -12.41570 -12.27894 -12.20167 -11.97232 -11.91477 -11.82130 -11.71399 -11.70053 -11.34673 -11.19805 -11.13384 -10.57546 -9.63637 -9.38064 -9.27318 -8.68378 -7.88853 -5.35028 0.49703 0.54959 1.45215 1.46539 1.55617 2.49989 2.88423 3.15280 3.27953 3.67895 3.69871 3.99108 4.02451 4.09345 4.10519 4.17370 4.24891 4.32863 4.40795 4.46528 4.51648 4.54404 4.60637 4.68923 4.70475 4.81928 4.83746 4.84675 4.86900 4.90745 4.97668 5.01092 5.05174 5.11987 5.16402 5.17848 5.24144 5.27117 5.31005 5.35627 5.37147 5.48577 5.51395 5.59961 5.63021 5.64481 5.68943 5.73370 5.76579 6.16943 6.21803 6.38124 6.50522 7.13480 7.84969 8.37387 9.17329 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017186 B = 0.003147 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.880457 B = 8895.664889 C = 9498.472303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C -0.130 4.130 4 C -0.125 4.125 5 C -0.111 4.111 6 C -0.080 4.080 7 C 0.134 3.866 8 H 0.035 0.965 9 N -0.664 5.664 10 C 0.110 3.890 11 C -0.101 4.101 12 C 0.141 3.859 13 N -0.610 5.610 14 C -0.263 4.263 15 H 0.066 0.934 16 C -0.051 4.051 17 N -0.936 5.936 18 Si 0.967 3.033 19 H -0.286 1.286 20 H -0.294 1.294 21 H -0.267 1.267 22 C 0.185 3.815 23 C -0.150 4.150 24 C -0.078 4.078 25 C -0.143 4.143 26 C -0.134 4.134 27 C -0.127 4.127 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.132 0.868 34 H 0.341 0.659 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.012 0.988 40 H 0.249 0.751 41 H 0.047 0.953 42 H -0.007 1.007 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.048 0.952 48 H 0.056 0.944 49 H 0.060 0.940 50 H 0.049 0.951 51 H 0.058 0.942 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.051 18.239 -14.143 24.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.143 4.143 5 C -0.130 4.130 6 C -0.081 4.081 7 C 0.024 3.976 8 H 0.053 0.947 9 N -0.294 5.294 10 C 0.000 4.000 11 C -0.140 4.140 12 C 0.015 3.985 13 N -0.333 5.333 14 C -0.393 4.393 15 H 0.084 0.916 16 C -0.246 4.246 17 N -0.582 5.582 18 Si 0.795 3.205 19 H -0.213 1.213 20 H -0.221 1.221 21 H -0.192 1.192 22 C 0.058 3.942 23 C -0.190 4.190 24 C -0.097 4.097 25 C -0.201 4.201 26 C -0.191 4.191 27 C -0.146 4.146 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.150 0.850 34 H 0.159 0.841 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.029 0.971 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.011 0.989 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.067 0.933 48 H 0.075 0.925 49 H 0.080 0.920 50 H 0.068 0.932 51 H 0.076 0.924 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.654 18.134 -14.598 24.506 hybrid contribution -0.646 -1.110 1.782 2.197 sum -8.300 17.023 -12.817 22.868 Atomic orbital electron populations 1.20811 0.89957 1.03234 1.02911 1.20139 0.97120 0.92932 0.99574 1.21291 0.94508 0.97979 1.00970 1.21413 0.94570 0.98496 0.99820 1.21176 1.00706 0.91593 0.99479 1.19803 0.93404 0.94653 1.00226 1.20438 0.89750 0.93304 0.94095 0.94737 1.60766 1.35690 1.10637 1.22270 1.21269 0.94782 0.90031 0.93903 1.21772 0.95069 0.96742 1.00459 1.21082 0.93984 0.93853 0.89588 1.44312 1.01418 1.76246 1.11369 1.19529 1.06239 1.17587 0.95992 0.91615 1.25828 0.99972 0.95832 1.03015 1.70197 1.27747 1.24520 1.35690 0.85271 0.78362 0.76368 0.80499 1.21279 1.22110 1.19173 1.20417 0.84224 0.91763 0.97749 1.22634 0.98756 0.98943 0.98706 1.20996 0.96815 0.99078 0.92786 1.21822 0.97427 1.01496 0.99340 1.21802 0.99766 0.97629 0.99937 1.21035 0.93612 0.98082 1.01876 0.90392 0.91698 0.90545 0.84486 0.84379 0.85035 0.84076 0.91972 0.90200 0.92904 0.92703 0.97051 0.94169 0.93470 0.98902 0.93153 0.92802 0.92370 0.91902 0.93292 0.92477 0.92047 0.93213 0.92355 0.86552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 10.01 71.24 0.71 -0.84 16 2 C -0.10 -1.82 5.88 -19.86 -0.12 -1.93 16 3 C -0.13 -2.22 9.70 22.27 0.22 -2.01 16 4 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16 5 C -0.11 -2.27 6.73 22.27 0.15 -2.12 16 6 C -0.08 -1.78 3.60 -19.86 -0.07 -1.85 16 7 C 0.13 3.26 1.90 44.17 0.08 3.34 16 8 H 0.03 0.96 7.00 -2.39 -0.02 0.95 16 9 N -0.66 -17.50 4.78 -473.18 -2.26 -19.76 16 10 C 0.11 3.59 2.23 44.94 0.10 3.69 16 11 C -0.10 -3.43 5.69 30.67 0.17 -3.25 16 12 C 0.14 5.95 6.52 86.36 0.56 6.52 16 13 N -0.61 -31.38 2.99 -699.11 -2.09 -33.47 16 14 C -0.26 -14.81 9.57 84.03 0.80 -14.01 16 15 H 0.07 3.61 7.89 -2.91 -0.02 3.58 16 16 C -0.05 -2.91 4.90 84.86 0.42 -2.50 16 17 N -0.94 -56.52 11.26 21.65 0.24 -56.27 16 18 Si 0.97 45.63 29.59 68.60 2.03 47.66 16 19 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 20 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 C 0.19 9.19 5.30 86.36 0.46 9.64 16 23 C -0.15 -5.75 5.31 30.67 0.16 -5.59 16 24 C -0.08 -1.75 2.80 -10.79 -0.03 -1.78 16 25 C -0.14 -2.86 8.85 71.98 0.64 -2.22 16 26 C -0.13 -2.76 7.88 71.98 0.57 -2.19 16 27 C -0.13 -2.73 8.37 22.27 0.19 -2.54 16 28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.90 8.09 -2.39 -0.02 0.88 16 30 H 0.08 0.86 8.09 -2.38 -0.02 0.85 16 31 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 32 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.13 2.65 6.89 -2.91 -0.02 2.63 16 34 H 0.34 9.10 7.77 -89.69 -0.70 8.40 16 35 H 0.06 2.15 7.03 -2.39 -0.02 2.14 16 36 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.05 2.27 7.93 -2.38 -0.02 2.25 16 39 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 41 H 0.05 2.66 6.12 -2.39 -0.01 2.65 16 42 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 43 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.05 1.93 7.43 -2.39 -0.02 1.92 16 45 H 0.06 1.49 7.33 -2.39 -0.02 1.47 16 46 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.06 1.13 6.68 -2.39 -0.02 1.12 16 49 H 0.06 1.36 7.62 -2.39 -0.02 1.34 16 50 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 51 H 0.06 1.16 5.62 -2.39 -0.01 1.15 16 52 H 0.12 2.43 8.04 -2.91 -0.02 2.41 16 Total: -1.00 -62.74 392.47 3.34 -59.41 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.18 Total: 24.07 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 5.24 Total: -21.64 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -4.11 Total: -109.50 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -62.74 3.34 -59.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599027105.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.373 kcal (2) G-P(sol) polarization free energy of solvation -62.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds