Wall clock time and date at job start Tue Mar 31 2020 12:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38259 * 120.00649 * 2 1 4 4 C 1.38208 * 119.99946 * 179.76572 * 3 2 1 5 5 C 1.38251 * 120.00479 * 0.50516 * 4 3 2 6 6 C 1.38223 * 119.99757 * 359.75148 * 5 4 3 7 7 C 1.50700 * 120.00008 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.47262 * 200.01748 * 7 6 5 9 9 N 1.46897 * 109.46868 * 320.02239 * 7 6 5 10 10 C 1.46907 * 110.99933 * 277.07303 * 9 7 6 11 11 C 1.53041 * 109.45782 * 272.07344 * 10 9 7 12 12 C 1.53198 * 109.30924 * 178.60077 * 11 10 9 13 13 N 1.46921 * 108.76781 * 54.65353 * 12 11 10 14 14 C 1.36938 * 120.63271 * 126.36269 * 13 12 11 15 15 H 1.07996 * 119.99535 * 328.76485 * 14 13 12 16 16 C 1.38808 * 119.99861 * 148.76617 * 14 13 12 17 17 N 1.31613 * 120.00319 * 345.09319 * 16 14 13 18 18 Si 1.86802 * 119.99521 * 165.09639 * 16 14 13 19 19 H 1.48493 * 109.47619 * 59.99923 * 18 16 14 20 20 H 1.48505 * 109.46797 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47246 * 299.99549 * 18 16 14 22 22 C 1.46928 * 118.73690 * 306.38478 * 13 12 11 23 23 C 1.53036 * 109.46311 * 152.01757 * 10 9 7 24 24 C 1.53006 * 109.46909 * 80.01964 * 7 6 5 25 25 C 1.52995 * 109.47096 * 54.26789 * 24 7 6 26 26 C 1.53007 * 109.46677 * 174.26711 * 24 7 6 27 27 C 1.38216 * 119.99569 * 180.27426 * 2 1 3 28 28 H 1.08997 * 109.47268 * 269.73217 * 1 2 3 29 29 H 1.09007 * 109.46989 * 29.72528 * 1 2 3 30 30 H 1.08994 * 109.47358 * 149.72191 * 1 2 3 31 31 H 1.07997 * 119.99678 * 0.02562 * 3 2 1 32 32 H 1.08004 * 119.99861 * 180.23405 * 4 3 2 33 33 H 1.07998 * 120.00341 * 179.72593 * 5 4 3 34 34 H 1.00901 * 111.00138 * 153.12650 * 9 7 6 35 35 H 1.08999 * 109.45705 * 32.03887 * 10 9 7 36 36 H 1.09002 * 109.49668 * 298.56071 * 11 10 9 37 37 H 1.08999 * 109.50304 * 58.66258 * 11 10 9 38 38 H 1.08998 * 109.59655 * 294.85999 * 12 11 10 39 39 H 1.09004 * 109.70262 * 174.50909 * 12 11 10 40 40 H 0.96996 * 120.00026 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.58777 * 293.81815 * 22 13 12 42 42 H 1.09005 * 109.70299 * 173.46512 * 22 13 12 43 43 H 1.09004 * 109.49701 * 301.33925 * 23 10 9 44 44 H 1.09001 * 109.49667 * 61.43142 * 23 10 9 45 45 H 1.09004 * 109.46880 * 294.26105 * 24 7 6 46 46 H 1.08995 * 109.47271 * 59.99762 * 25 24 7 47 47 H 1.09002 * 109.46717 * 180.02562 * 25 24 7 48 48 H 1.09001 * 109.46858 * 299.99554 * 25 24 7 49 49 H 1.08996 * 109.47111 * 67.11331 * 26 24 7 50 50 H 1.08998 * 109.46785 * 187.11541 * 26 24 7 51 51 H 1.08997 * 109.46931 * 307.11206 * 26 24 7 52 52 H 1.07995 * 120.00003 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1971 0.0049 5 6 4.2717 -0.0002 -0.0008 6 6 3.5805 -1.1972 -0.0061 7 6 4.3339 -2.5023 -0.0129 8 1 3.6792 -3.2980 -0.3681 9 7 5.4973 -2.3914 -0.9029 10 6 5.1140 -2.6242 -2.3018 11 6 5.1908 -4.1215 -2.6091 12 6 4.7569 -4.3642 -4.0582 13 7 5.5748 -3.5240 -4.9435 14 6 6.2599 -4.0763 -5.9927 15 1 6.6334 -5.0871 -5.9214 16 6 6.4741 -3.3370 -7.1478 17 7 5.7858 -2.2357 -7.3615 18 14 7.7393 -3.9052 -8.3991 19 1 7.3698 -5.2536 -8.8996 20 1 7.7771 -2.9485 -9.5343 21 1 9.0774 -3.9648 -7.7580 22 6 5.6442 -2.0799 -4.6813 23 6 6.0678 -1.8629 -3.2253 24 6 4.8063 -2.8258 1.4060 25 6 3.6103 -2.8003 2.3599 26 6 5.4453 -4.2159 1.4262 27 6 2.1979 -1.1970 -0.0057 28 1 -0.3633 -0.0048 1.0276 29 1 -0.3633 0.8925 -0.5096 30 1 -0.3634 -0.8874 -0.5181 31 1 1.6585 2.1326 0.0004 32 1 4.1206 2.1324 0.0087 33 1 5.3517 -0.0003 -0.0014 34 1 6.2312 -3.0232 -0.6192 35 1 4.0949 -2.2724 -2.4624 36 1 6.2150 -4.4688 -2.4728 37 1 4.5289 -4.6656 -1.9354 38 1 3.7054 -4.1015 -4.1738 39 1 4.9015 -5.4138 -4.3142 40 1 5.9352 -1.7193 -8.1688 41 1 4.6650 -1.6309 -4.8479 42 1 6.3749 -1.6203 -5.3469 43 1 6.0302 -0.7992 -2.9902 44 1 7.0836 -2.2317 -3.0830 45 1 5.5397 -2.0842 1.7228 46 1 2.8771 -3.5419 2.0431 47 1 3.9470 -3.0304 3.3708 48 1 3.1552 -1.8100 2.3454 49 1 6.3684 -4.1999 0.8468 50 1 5.6670 -4.4989 2.4552 51 1 4.7556 -4.9391 0.9911 52 1 1.6579 -2.1322 -0.0098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599027106.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:12 Heat of formation + Delta-G solvation = 23.894615 kcal Electronic energy + Delta-G solvation = -27663.352096 eV Core-core repulsion = 24241.020281 eV Total energy + Delta-G solvation = -3422.331815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.90439 -38.07108 -36.59892 -33.92068 -32.67372 -31.71607 -30.98009 -29.93531 -28.95356 -27.11028 -26.81018 -25.51467 -24.00267 -22.17849 -21.86894 -21.68375 -20.90479 -19.52614 -18.95590 -16.77243 -16.48016 -15.86230 -15.24949 -15.01836 -14.80603 -14.59945 -14.04052 -13.74471 -13.67616 -13.50346 -13.35926 -13.12678 -12.96554 -12.87263 -12.74064 -12.43496 -12.31596 -12.17004 -12.09774 -11.87073 -11.45149 -11.34331 -11.14109 -10.95693 -10.88460 -10.83100 -10.71530 -10.66290 -10.47699 -10.17591 -10.15859 -9.95489 -9.68210 -9.39548 -8.64726 -8.45612 -8.40905 -8.03345 -6.57351 -5.74476 -3.20316 1.49634 1.53866 3.40428 3.45956 3.47176 3.86859 4.30795 4.52712 4.69216 4.85004 4.91265 4.92274 5.00044 5.17634 5.30970 5.36586 5.39244 5.46761 5.47585 5.50760 5.52548 5.54136 5.64989 5.69280 5.71714 5.76421 5.78721 5.79806 5.83665 5.95466 5.97480 6.12969 6.13872 6.18140 6.23730 6.27155 6.37751 6.55662 6.61521 6.63267 6.68124 6.70085 6.76323 6.87396 6.91533 7.00792 7.16258 7.41358 7.46116 7.70462 7.75549 7.83680 8.51994 9.26821 9.89253 10.48430 11.33967 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015312 B = 0.003510 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.172583 B = 7974.238976 C = 8947.689341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.127 4.127 4 C -0.123 4.123 5 C -0.090 4.090 6 C -0.060 4.060 7 C 0.130 3.870 8 H 0.049 0.951 9 N -0.681 5.681 10 C 0.099 3.901 11 C -0.158 4.158 12 C 0.150 3.850 13 N -0.591 5.591 14 C -0.256 4.256 15 H 0.062 0.938 16 C 0.006 3.994 17 N -0.902 5.902 18 Si 0.902 3.098 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.174 3.826 23 C -0.123 4.123 24 C -0.092 4.092 25 C -0.145 4.145 26 C -0.151 4.151 27 C -0.118 4.118 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.339 0.661 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.043 0.957 38 H 0.014 0.986 39 H 0.051 0.949 40 H 0.254 0.746 41 H 0.016 0.984 42 H 0.082 0.918 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.078 0.922 46 H 0.052 0.948 47 H 0.052 0.948 48 H 0.060 0.940 49 H 0.057 0.943 50 H 0.056 0.944 51 H 0.054 0.946 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.308 2.851 20.202 21.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.141 4.141 5 C -0.108 4.108 6 C -0.060 4.060 7 C 0.020 3.980 8 H 0.067 0.933 9 N -0.312 5.312 10 C -0.010 4.010 11 C -0.198 4.198 12 C 0.023 3.977 13 N -0.314 5.314 14 C -0.385 4.385 15 H 0.079 0.921 16 C -0.193 4.193 17 N -0.545 5.545 18 Si 0.732 3.268 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.048 3.952 23 C -0.162 4.162 24 C -0.110 4.110 25 C -0.203 4.203 26 C -0.208 4.208 27 C -0.136 4.136 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.146 0.854 34 H 0.159 0.841 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.034 0.966 42 H 0.101 0.899 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.096 0.904 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.079 0.921 49 H 0.076 0.924 50 H 0.075 0.925 51 H 0.073 0.927 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.336 3.640 19.985 21.279 hybrid contribution 0.455 -1.188 -0.798 1.502 sum -5.881 2.452 19.186 20.217 Atomic orbital electron populations 1.20755 0.91628 1.02637 1.01844 1.19789 0.95708 0.93184 1.00674 1.20948 0.94374 0.97155 1.02007 1.21147 0.94179 0.98137 1.00666 1.21003 1.00542 0.91234 0.98032 1.19760 0.92748 0.95078 0.98446 1.20459 0.92095 0.93125 0.92291 0.93282 1.60730 1.09337 1.58636 1.02511 1.21504 0.99246 0.94013 0.86219 1.22677 1.00789 0.96818 0.99556 1.20806 0.93329 0.95154 0.88435 1.44005 1.53406 1.03103 1.30850 1.19103 1.27869 0.99540 0.92036 0.92060 1.25117 0.99179 0.98330 0.96669 1.70010 1.40280 1.17494 1.26761 0.86388 0.81760 0.77844 0.80850 1.20908 1.21616 1.21003 1.20731 0.99197 0.84686 0.90599 1.22150 0.98310 0.98329 0.97452 1.21220 0.97980 0.97617 0.94214 1.21839 0.97759 1.02203 0.98473 1.21906 1.00776 0.96375 1.01791 1.20866 0.93673 0.97270 1.01796 0.91601 0.91774 0.91719 0.86741 0.86499 0.85375 0.84113 0.91494 0.92311 0.93824 0.96788 0.93062 0.93602 0.96619 0.89935 0.92901 0.92979 0.90356 0.92883 0.92888 0.92136 0.92366 0.92460 0.92705 0.86785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 36.00 0.36 -0.67 16 2 C -0.09 -1.10 5.88 -104.62 -0.62 -1.72 16 3 C -0.13 -1.48 9.70 -39.58 -0.38 -1.87 16 4 C -0.12 -1.50 10.05 -39.59 -0.40 -1.90 16 5 C -0.09 -1.18 9.33 -39.58 -0.37 -1.55 16 6 C -0.06 -0.77 3.38 -104.62 -0.35 -1.12 16 7 C 0.13 1.60 1.67 -68.86 -0.12 1.49 16 8 H 0.05 0.65 7.19 -51.93 -0.37 0.28 16 9 N -0.68 -9.48 5.30 -100.91 -0.54 -10.02 16 10 C 0.10 1.70 2.23 -67.67 -0.15 1.55 16 11 C -0.16 -2.76 5.31 -26.61 -0.14 -2.90 16 12 C 0.15 3.23 6.52 -3.71 -0.02 3.21 16 13 N -0.59 -15.10 2.98 -172.32 -0.51 -15.62 16 14 C -0.26 -7.15 9.56 -15.06 -0.14 -7.29 16 15 H 0.06 1.68 7.87 -52.49 -0.41 1.27 16 16 C 0.01 0.17 4.94 -17.43 -0.09 0.09 16 17 N -0.90 -26.62 11.30 55.49 0.63 -25.99 16 18 Si 0.90 21.94 29.58 -169.99 -5.03 16.92 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 C 0.17 4.27 5.27 -3.71 -0.02 4.25 16 23 C -0.12 -2.43 5.69 -26.62 -0.15 -2.58 16 24 C -0.09 -0.93 2.63 -90.62 -0.24 -1.17 16 25 C -0.14 -1.35 8.62 37.16 0.32 -1.03 16 26 C -0.15 -1.41 8.89 37.16 0.33 -1.08 16 27 C -0.12 -1.46 8.35 -39.58 -0.33 -1.79 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 33 H 0.13 1.70 7.72 -52.49 -0.41 1.29 16 34 H 0.34 4.48 6.35 -39.29 -0.25 4.23 16 35 H 0.07 1.27 7.53 -51.93 -0.39 0.88 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.04 0.67 7.61 -51.93 -0.40 0.28 16 38 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.05 1.09 7.93 -51.93 -0.41 0.67 16 40 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 2.26 6.25 -51.93 -0.32 1.93 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.61 6.57 -51.93 -0.34 0.27 16 49 H 0.06 0.56 6.71 -51.93 -0.35 0.21 16 50 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.05 0.53 8.13 -51.93 -0.42 0.11 16 52 H 0.11 1.30 8.04 -52.49 -0.42 0.88 16 LS Contribution 398.41 15.07 6.00 6.00 Total: -1.00 -29.48 398.41 -11.50 -40.98 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -9.54 Total: 3.82 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -2.51 Total: -16.09 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.42 Total: -51.63 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.48 -11.50 -40.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599027106.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.874 kcal (2) G-P(sol) polarization free energy of solvation -29.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds