Wall clock time and date at job start Tue Mar 31 2020 12:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38259 * 120.00649 * 2 1 4 4 C 1.38208 * 119.99946 * 179.76572 * 3 2 1 5 5 C 1.38251 * 120.00479 * 0.50516 * 4 3 2 6 6 C 1.38223 * 119.99757 * 359.75148 * 5 4 3 7 7 C 1.50700 * 120.00008 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.47262 * 200.01748 * 7 6 5 9 9 N 1.46897 * 109.46868 * 320.02239 * 7 6 5 10 10 C 1.46907 * 110.99933 * 277.07303 * 9 7 6 11 11 C 1.53041 * 109.45782 * 272.07344 * 10 9 7 12 12 C 1.53198 * 109.30924 * 178.60077 * 11 10 9 13 13 N 1.46921 * 108.76781 * 54.65353 * 12 11 10 14 14 C 1.36938 * 120.63271 * 126.36269 * 13 12 11 15 15 H 1.07996 * 119.99535 * 328.76485 * 14 13 12 16 16 C 1.38808 * 119.99861 * 148.76617 * 14 13 12 17 17 N 1.31613 * 120.00319 * 345.09319 * 16 14 13 18 18 Si 1.86802 * 119.99521 * 165.09639 * 16 14 13 19 19 H 1.48493 * 109.47619 * 59.99923 * 18 16 14 20 20 H 1.48505 * 109.46797 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47246 * 299.99549 * 18 16 14 22 22 C 1.46928 * 118.73690 * 306.38478 * 13 12 11 23 23 C 1.53036 * 109.46311 * 152.01757 * 10 9 7 24 24 C 1.53006 * 109.46909 * 80.01964 * 7 6 5 25 25 C 1.52995 * 109.47096 * 54.26789 * 24 7 6 26 26 C 1.53007 * 109.46677 * 174.26711 * 24 7 6 27 27 C 1.38216 * 119.99569 * 180.27426 * 2 1 3 28 28 H 1.08997 * 109.47268 * 269.73217 * 1 2 3 29 29 H 1.09007 * 109.46989 * 29.72528 * 1 2 3 30 30 H 1.08994 * 109.47358 * 149.72191 * 1 2 3 31 31 H 1.07997 * 119.99678 * 0.02562 * 3 2 1 32 32 H 1.08004 * 119.99861 * 180.23405 * 4 3 2 33 33 H 1.07998 * 120.00341 * 179.72593 * 5 4 3 34 34 H 1.00901 * 111.00138 * 153.12650 * 9 7 6 35 35 H 1.08999 * 109.45705 * 32.03887 * 10 9 7 36 36 H 1.09002 * 109.49668 * 298.56071 * 11 10 9 37 37 H 1.08999 * 109.50304 * 58.66258 * 11 10 9 38 38 H 1.08998 * 109.59655 * 294.85999 * 12 11 10 39 39 H 1.09004 * 109.70262 * 174.50909 * 12 11 10 40 40 H 0.96996 * 120.00026 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.58777 * 293.81815 * 22 13 12 42 42 H 1.09005 * 109.70299 * 173.46512 * 22 13 12 43 43 H 1.09004 * 109.49701 * 301.33925 * 23 10 9 44 44 H 1.09001 * 109.49667 * 61.43142 * 23 10 9 45 45 H 1.09004 * 109.46880 * 294.26105 * 24 7 6 46 46 H 1.08995 * 109.47271 * 59.99762 * 25 24 7 47 47 H 1.09002 * 109.46717 * 180.02562 * 25 24 7 48 48 H 1.09001 * 109.46858 * 299.99554 * 25 24 7 49 49 H 1.08996 * 109.47111 * 67.11331 * 26 24 7 50 50 H 1.08998 * 109.46785 * 187.11541 * 26 24 7 51 51 H 1.08997 * 109.46931 * 307.11206 * 26 24 7 52 52 H 1.07995 * 120.00003 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1971 0.0049 5 6 4.2717 -0.0002 -0.0008 6 6 3.5805 -1.1972 -0.0061 7 6 4.3339 -2.5023 -0.0129 8 1 3.6792 -3.2980 -0.3681 9 7 5.4973 -2.3914 -0.9029 10 6 5.1140 -2.6242 -2.3018 11 6 5.1908 -4.1215 -2.6091 12 6 4.7569 -4.3642 -4.0582 13 7 5.5748 -3.5240 -4.9435 14 6 6.2599 -4.0763 -5.9927 15 1 6.6334 -5.0871 -5.9214 16 6 6.4741 -3.3370 -7.1478 17 7 5.7858 -2.2357 -7.3615 18 14 7.7393 -3.9052 -8.3991 19 1 7.3698 -5.2536 -8.8996 20 1 7.7771 -2.9485 -9.5343 21 1 9.0774 -3.9648 -7.7580 22 6 5.6442 -2.0799 -4.6813 23 6 6.0678 -1.8629 -3.2253 24 6 4.8063 -2.8258 1.4060 25 6 3.6103 -2.8003 2.3599 26 6 5.4453 -4.2159 1.4262 27 6 2.1979 -1.1970 -0.0057 28 1 -0.3633 -0.0048 1.0276 29 1 -0.3633 0.8925 -0.5096 30 1 -0.3634 -0.8874 -0.5181 31 1 1.6585 2.1326 0.0004 32 1 4.1206 2.1324 0.0087 33 1 5.3517 -0.0003 -0.0014 34 1 6.2312 -3.0232 -0.6192 35 1 4.0949 -2.2724 -2.4624 36 1 6.2150 -4.4688 -2.4728 37 1 4.5289 -4.6656 -1.9354 38 1 3.7054 -4.1015 -4.1738 39 1 4.9015 -5.4138 -4.3142 40 1 5.9352 -1.7193 -8.1688 41 1 4.6650 -1.6309 -4.8479 42 1 6.3749 -1.6203 -5.3469 43 1 6.0302 -0.7992 -2.9902 44 1 7.0836 -2.2317 -3.0830 45 1 5.5397 -2.0842 1.7228 46 1 2.8771 -3.5419 2.0431 47 1 3.9470 -3.0304 3.3708 48 1 3.1552 -1.8100 2.3454 49 1 6.3684 -4.1999 0.8468 50 1 5.6670 -4.4989 2.4552 51 1 4.7556 -4.9391 0.9911 52 1 1.6579 -2.1322 -0.0098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599027106.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:11 Heat of formation + Delta-G solvation = 9.943613 kcal Electronic energy + Delta-G solvation = -27663.957057 eV Core-core repulsion = 24241.020281 eV Total energy + Delta-G solvation = -3422.936776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.90652 -39.45050 -37.84933 -35.47206 -33.66540 -33.27741 -32.05437 -31.64551 -30.54733 -27.86145 -27.68640 -27.01385 -25.51867 -23.80602 -23.14468 -22.87048 -22.04048 -20.89623 -20.18672 -18.72164 -17.41039 -16.94147 -16.88805 -16.30382 -15.98381 -15.68387 -15.44381 -15.33003 -14.90091 -14.74281 -14.64155 -14.49269 -14.13081 -13.98416 -13.85330 -13.69139 -13.40566 -13.15742 -12.97452 -12.95854 -12.90940 -12.70763 -12.58673 -12.55162 -12.27446 -12.06634 -11.94970 -11.86864 -11.80646 -11.79130 -11.62651 -11.43495 -11.32497 -11.10852 -10.55652 -9.57970 -9.37102 -9.24757 -8.65123 -7.87955 -5.37702 0.56067 0.60307 1.45906 1.48661 1.55428 2.50495 2.92663 3.16142 3.29802 3.68746 3.78900 3.93639 4.03546 4.06523 4.12051 4.14694 4.17471 4.33138 4.39586 4.42393 4.51818 4.56177 4.59663 4.72109 4.76697 4.79001 4.82901 4.83696 4.86058 4.88281 4.96543 4.99639 5.02963 5.04204 5.08514 5.15622 5.23183 5.27686 5.28086 5.32533 5.37781 5.45628 5.46896 5.49746 5.64190 5.69925 5.70942 5.77244 5.82113 6.22701 6.25110 6.40027 6.58857 7.14658 7.84541 8.38860 9.18392 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015312 B = 0.003510 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.172583 B = 7974.238976 C = 8947.689341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C -0.136 4.136 4 C -0.131 4.131 5 C -0.108 4.108 6 C -0.069 4.069 7 C 0.135 3.865 8 H 0.044 0.956 9 N -0.675 5.675 10 C 0.116 3.884 11 C -0.142 4.142 12 C 0.145 3.855 13 N -0.608 5.608 14 C -0.269 4.269 15 H 0.065 0.935 16 C -0.047 4.047 17 N -0.935 5.935 18 Si 0.969 3.031 19 H -0.274 1.274 20 H -0.293 1.293 21 H -0.277 1.277 22 C 0.184 3.816 23 C -0.107 4.107 24 C -0.085 4.085 25 C -0.140 4.140 26 C -0.149 4.149 27 C -0.131 4.131 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.347 0.653 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.006 0.994 39 H 0.053 0.947 40 H 0.250 0.750 41 H -0.012 1.012 42 H 0.048 0.952 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.075 0.925 46 H 0.055 0.945 47 H 0.066 0.934 48 H 0.050 0.950 49 H 0.055 0.945 50 H 0.070 0.930 51 H 0.053 0.947 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.315 2.062 22.048 23.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.101 4.101 3 C -0.154 4.154 4 C -0.149 4.149 5 C -0.126 4.126 6 C -0.069 4.069 7 C 0.025 3.975 8 H 0.062 0.938 9 N -0.306 5.306 10 C 0.006 3.994 11 C -0.182 4.182 12 C 0.019 3.981 13 N -0.332 5.332 14 C -0.399 4.399 15 H 0.082 0.918 16 C -0.243 4.243 17 N -0.581 5.581 18 Si 0.796 3.204 19 H -0.200 1.200 20 H -0.220 1.220 21 H -0.203 1.203 22 C 0.057 3.943 23 C -0.147 4.147 24 C -0.103 4.103 25 C -0.198 4.198 26 C -0.207 4.207 27 C -0.149 4.149 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.141 0.859 34 H 0.168 0.832 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.024 0.976 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.006 0.994 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.089 0.911 51 H 0.072 0.928 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.344 2.829 21.870 22.947 hybrid contribution 0.382 -0.925 -1.342 1.674 sum -5.962 1.905 20.529 21.462 Atomic orbital electron populations 1.20794 0.89854 1.03112 1.02955 1.20151 0.97183 0.93003 0.99721 1.21243 0.94386 0.98091 1.01671 1.21396 0.94740 0.98502 1.00299 1.21062 1.00416 0.91876 0.99247 1.19866 0.93156 0.95207 0.98714 1.20484 0.91138 0.92787 0.93106 0.93833 1.60575 1.10295 1.58870 1.00902 1.21143 0.97356 0.93252 0.87672 1.22499 1.01389 0.97270 0.97056 1.20963 0.92408 0.94566 0.90181 1.44255 1.54102 1.03652 1.31172 1.19463 1.27945 0.99782 0.92749 0.91759 1.25906 1.01091 0.98583 0.98676 1.70177 1.41904 1.18770 1.27202 0.85335 0.79390 0.77457 0.78209 1.19969 1.21955 1.20261 1.20487 0.96683 0.84201 0.92889 1.21895 0.98665 0.99198 0.94933 1.21161 0.98285 0.98111 0.92788 1.21789 0.97331 1.01716 0.98942 1.21895 1.00476 0.95557 1.02726 1.21043 0.93667 0.97991 1.02201 0.90087 0.90976 0.91586 0.84840 0.85088 0.85937 0.83205 0.93141 0.92083 0.90956 0.97610 0.92879 0.94089 0.99392 0.93373 0.92354 0.93127 0.90686 0.92613 0.91542 0.93140 0.92551 0.91054 0.92813 0.86097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 10.01 71.23 0.71 -1.13 16 2 C -0.10 -2.24 5.88 -19.87 -0.12 -2.36 16 3 C -0.14 -3.02 9.70 22.27 0.22 -2.80 16 4 C -0.13 -3.10 10.05 22.27 0.22 -2.88 16 5 C -0.11 -2.78 9.33 22.27 0.21 -2.57 16 6 C -0.07 -1.72 3.38 -19.86 -0.07 -1.79 16 7 C 0.13 3.11 1.67 44.17 0.07 3.19 16 8 H 0.04 1.08 7.19 -2.39 -0.02 1.06 16 9 N -0.68 -17.85 5.30 -473.17 -2.51 -20.36 16 10 C 0.12 3.88 2.23 44.94 0.10 3.98 16 11 C -0.14 -4.74 5.31 30.67 0.16 -4.57 16 12 C 0.14 6.21 6.52 86.37 0.56 6.78 16 13 N -0.61 -31.62 2.98 -699.10 -2.08 -33.70 16 14 C -0.27 -15.21 9.56 84.03 0.80 -14.41 16 15 H 0.06 3.52 7.87 -2.91 -0.02 3.50 16 16 C -0.05 -2.67 4.94 84.86 0.42 -2.26 16 17 N -0.94 -56.89 11.30 21.65 0.24 -56.64 16 18 Si 0.97 45.57 29.58 68.60 2.03 47.60 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 C 0.18 9.32 5.27 86.36 0.45 9.77 16 23 C -0.11 -4.28 5.69 30.67 0.17 -4.10 16 24 C -0.08 -1.55 2.63 -10.79 -0.03 -1.58 16 25 C -0.14 -2.32 8.62 71.98 0.62 -1.69 16 26 C -0.15 -2.40 8.89 71.98 0.64 -1.76 16 27 C -0.13 -3.13 8.35 22.27 0.19 -2.94 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.08 8.08 -2.38 -0.02 1.06 16 30 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 31 H 0.13 2.36 8.06 -2.91 -0.02 2.33 16 32 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 33 H 0.12 3.21 7.72 -2.91 -0.02 3.19 16 34 H 0.35 8.43 6.35 -89.69 -0.57 7.86 16 35 H 0.05 1.90 7.53 -2.39 -0.02 1.88 16 36 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.07 2.04 7.61 -2.39 -0.02 2.02 16 38 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.05 2.22 7.93 -2.39 -0.02 2.20 16 40 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 41 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 42 H 0.05 2.75 6.25 -2.38 -0.01 2.73 16 43 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 44 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 46 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.05 0.94 6.57 -2.39 -0.02 0.93 16 49 H 0.06 0.93 6.71 -2.39 -0.02 0.91 16 50 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 51 H 0.05 0.88 8.13 -2.39 -0.02 0.87 16 52 H 0.12 2.63 8.04 -2.91 -0.02 2.61 16 Total: -1.00 -64.49 398.41 3.32 -61.16 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.29 Total: 25.05 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 5.35 Total: -23.11 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -4.35 Total: -110.71 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -64.49 3.32 -61.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599027106.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.107 kcal (2) G-P(sol) polarization free energy of solvation -64.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds