Wall clock time and date at job start Tue Mar 31 2020 12:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38229 * 120.00172 * 2 1 4 4 C 1.38237 * 119.99772 * 180.23853 * 3 2 1 5 5 C 1.38237 * 120.00223 * 359.49381 * 4 3 2 6 6 C 1.50696 * 120.00236 * 180.28076 * 5 4 3 7 7 C 1.52999 * 109.47641 * 89.99377 * 6 5 4 8 8 C 1.52996 * 109.47369 * 176.26408 * 7 6 5 9 9 H 1.09006 * 109.47148 * 54.24610 * 8 7 6 10 10 C 1.53000 * 109.47336 * 294.25054 * 8 7 6 11 11 N 1.46901 * 109.47331 * 174.24681 * 8 7 6 12 12 C 1.46952 * 110.99649 * 307.43949 * 11 8 7 13 13 C 1.53053 * 109.36175 * 176.81051 * 12 11 8 14 14 N 1.46958 * 109.36704 * 58.39880 * 13 12 11 15 15 C 1.46901 * 111.00378 * 176.81154 * 14 13 12 16 16 C 1.50699 * 109.46594 * 53.75308 * 15 14 13 17 17 H 1.08000 * 120.00713 * 4.58850 * 16 15 14 18 18 C 1.37878 * 119.99338 * 184.59228 * 16 15 14 19 19 N 1.31520 * 119.99690 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00228 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46979 * 90.00608 * 20 18 16 22 22 H 1.48503 * 109.47260 * 210.00129 * 20 18 16 23 23 H 1.48494 * 109.47369 * 330.00452 * 20 18 16 24 24 C 1.46962 * 110.87910 * 300.68157 * 14 13 12 25 25 C 1.46953 * 110.99921 * 183.63443 * 11 8 7 26 26 C 1.38229 * 119.99632 * 0.25128 * 5 4 3 27 27 C 1.38235 * 119.99613 * 179.73005 * 2 1 3 28 28 H 1.09011 * 109.46935 * 270.27602 * 1 2 3 29 29 H 1.09002 * 109.47143 * 30.26747 * 1 2 3 30 30 H 1.08997 * 109.47568 * 150.27409 * 1 2 3 31 31 H 1.07999 * 120.00468 * 0.02562 * 3 2 1 32 32 H 1.08007 * 120.00123 * 179.76203 * 4 3 2 33 33 H 1.09003 * 109.46892 * 210.00109 * 6 5 4 34 34 H 1.09007 * 109.46909 * 329.99409 * 6 5 4 35 35 H 1.08999 * 109.47128 * 296.26787 * 7 6 5 36 36 H 1.09000 * 109.46759 * 56.26041 * 7 6 5 37 37 H 1.09003 * 109.47291 * 59.99389 * 10 8 7 38 38 H 1.08998 * 109.47343 * 180.02562 * 10 8 7 39 39 H 1.09006 * 109.46640 * 299.99867 * 10 8 7 40 40 H 1.09006 * 109.48868 * 296.77223 * 12 11 8 41 41 H 1.08999 * 109.49566 * 56.84330 * 12 11 8 42 42 H 1.09002 * 109.48987 * 298.43122 * 13 12 11 43 43 H 1.08996 * 109.48995 * 178.36333 * 13 12 11 44 44 H 1.09005 * 109.46968 * 173.74941 * 15 14 13 45 45 H 1.08993 * 109.46677 * 293.75460 * 15 14 13 46 46 H 0.97003 * 120.00110 * 179.97438 * 19 18 16 47 47 H 1.08993 * 109.48735 * 299.35072 * 24 14 13 48 48 H 1.08999 * 109.48721 * 179.28390 * 24 14 13 49 49 H 1.08999 * 109.49364 * 303.15916 * 25 11 8 50 50 H 1.09005 * 109.48626 * 63.20562 * 25 11 8 51 51 H 1.08002 * 120.00217 * 180.02562 * 26 5 4 52 52 H 1.07999 * 120.00153 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1970 -0.0050 5 6 4.2717 -0.0002 0.0006 6 6 5.7787 -0.0002 0.0016 7 6 6.2879 0.0061 1.4443 8 6 7.8149 -0.0880 1.4467 9 1 8.2288 0.7062 0.8252 10 6 8.2431 -1.4470 0.8895 11 7 8.3124 0.0565 2.8213 12 6 7.7742 1.2702 3.4512 13 6 8.2511 1.3421 4.9038 14 7 9.7203 1.3432 4.9349 15 6 10.2177 1.4876 6.3096 16 6 9.5956 0.4285 7.1826 17 1 8.9585 -0.3261 6.7455 18 6 9.8398 0.4230 8.5396 19 7 9.2973 -0.5016 9.3016 20 14 10.9422 1.7277 9.2956 21 1 10.1202 2.8966 9.6999 22 1 11.6262 1.1673 10.4887 23 1 11.9565 2.1567 8.2995 24 6 10.2584 0.1294 4.3049 25 6 9.7816 0.0575 2.8523 26 6 3.5805 -1.1972 0.0059 27 6 2.1981 -1.1972 0.0056 28 1 -0.3633 0.0050 1.0278 29 1 -0.3633 0.8876 -0.5180 30 1 -0.3634 -0.8924 -0.5095 31 1 1.6583 2.1324 0.0004 32 1 4.1206 2.1323 -0.0089 33 1 6.1422 -0.8925 -0.5082 34 1 6.1423 0.8875 -0.5160 35 1 5.9800 0.9298 1.9342 36 1 5.8705 -0.8461 1.9806 37 1 7.8740 -1.5542 -0.1305 38 1 9.3310 -1.5142 0.8916 39 1 7.8292 -2.2412 1.5110 40 1 8.1262 2.1479 2.9091 41 1 6.6849 1.2401 3.4272 42 1 7.8764 0.4782 5.4528 43 1 7.8770 2.2564 5.3645 44 1 11.3019 1.3743 6.3174 45 1 9.9526 2.4740 6.6900 46 1 9.4693 -0.5058 10.2562 47 1 9.9065 -0.7482 4.8470 48 1 11.3477 0.1596 4.3290 49 1 10.1557 -0.8567 2.3916 50 1 10.1563 0.9213 2.3031 51 1 4.1204 -2.1326 0.0107 52 1 1.6580 -2.1324 0.0105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601316404.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:28 Heat of formation + Delta-G solvation = 22.101286 kcal Electronic energy + Delta-G solvation = -26377.043283 eV Core-core repulsion = 22954.633704 eV Total energy + Delta-G solvation = -3422.409580 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.77304 -39.02218 -36.51148 -34.45837 -32.66728 -31.70510 -31.08494 -30.61988 -29.48096 -27.64235 -26.67157 -24.94831 -23.65163 -22.88677 -22.41906 -21.46468 -20.77317 -19.91816 -19.04318 -16.79943 -16.61125 -15.85793 -15.74000 -15.22274 -14.79691 -14.59393 -14.38204 -14.20505 -14.08858 -13.96361 -13.67935 -13.54663 -13.22654 -12.83879 -12.80916 -12.59543 -12.43148 -12.35820 -12.13802 -11.99322 -11.58498 -11.41330 -11.28603 -11.16472 -11.12846 -10.95329 -10.83540 -10.57697 -10.53248 -10.40870 -10.10463 -9.91521 -9.79267 -9.42863 -9.08233 -8.61720 -8.56883 -7.98309 -7.15686 -6.07532 -4.07057 1.16364 1.24462 3.28937 3.36565 3.40572 3.55832 4.11629 4.41700 4.55072 4.59259 4.72994 4.84934 4.85057 4.98234 5.06251 5.10617 5.25400 5.26679 5.30641 5.32691 5.34667 5.43765 5.48178 5.52691 5.54561 5.61638 5.66363 5.83029 5.84450 5.85938 5.89970 5.94922 5.98101 6.01133 6.04271 6.17455 6.22362 6.26159 6.33578 6.39837 6.41729 6.52227 6.61645 6.80529 6.85965 6.91799 6.97492 7.08309 7.42118 7.44365 7.59494 8.09459 8.13790 8.48450 8.96846 9.55288 11.05353 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017092 B = 0.002474 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.831921 B =11315.674906 C =12174.726037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.119 4.119 4 C -0.114 4.114 5 C -0.081 4.081 6 C -0.081 4.081 7 C -0.110 4.110 8 C 0.082 3.918 9 H 0.035 0.965 10 C -0.146 4.146 11 N -0.532 5.532 12 C 0.056 3.944 13 C 0.063 3.937 14 N -0.537 5.537 15 C 0.154 3.846 16 C -0.549 4.549 17 H 0.078 0.922 18 C 0.071 3.929 19 N -0.899 5.899 20 Si 0.879 3.121 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 C 0.062 3.938 25 C 0.060 3.940 26 C -0.113 4.113 27 C -0.119 4.119 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.030 0.970 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.025 0.975 45 H 0.025 0.975 46 H 0.263 0.737 47 H 0.051 0.949 48 H 0.066 0.934 49 H 0.072 0.928 50 H 0.031 0.969 51 H 0.121 0.879 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.832 0.885 -22.443 25.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.137 4.137 4 C -0.132 4.132 5 C -0.081 4.081 6 C -0.118 4.118 7 C -0.148 4.148 8 C -0.026 4.026 9 H 0.053 0.947 10 C -0.203 4.203 11 N -0.257 5.257 12 C -0.072 4.072 13 C -0.065 4.065 14 N -0.261 5.261 15 C 0.028 3.972 16 C -0.587 4.587 17 H 0.096 0.904 18 C -0.131 4.131 19 N -0.537 5.537 20 Si 0.706 3.294 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.190 1.190 24 C -0.067 4.067 25 C -0.068 4.068 26 C -0.131 4.131 27 C -0.137 4.137 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.044 0.956 45 H 0.043 0.957 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.084 0.916 49 H 0.090 0.910 50 H 0.050 0.950 51 H 0.139 0.861 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.829 0.829 -22.253 25.215 hybrid contribution 0.558 0.615 0.714 1.095 sum -11.271 1.444 -21.539 24.352 Atomic orbital electron populations 1.20783 0.91398 1.02542 1.02322 1.19905 0.95988 0.93306 1.00378 1.21010 0.94217 0.97450 1.01042 1.21053 0.94104 0.97689 1.00368 1.19906 0.95785 0.93109 0.99301 1.20673 0.90572 1.02863 0.97717 1.21725 0.94384 1.03302 0.95376 1.21582 0.94603 0.97049 0.89399 0.94685 1.21913 1.01326 0.97026 1.00065 1.62145 1.08375 1.38632 1.16536 1.22312 0.99050 0.89934 0.95930 1.21965 0.89237 1.01808 0.93523 1.62616 1.07390 1.35787 1.20345 1.20149 0.95643 0.96599 0.84859 1.21715 1.30862 1.13566 0.92607 0.90437 1.24982 0.95373 0.95527 0.97250 1.69936 1.44260 1.34093 1.05451 0.86799 0.81480 0.82119 0.78991 1.20235 1.21364 1.18967 1.21961 0.98570 0.93671 0.92518 1.22223 0.87004 0.99820 0.97781 1.21051 0.94080 0.97714 1.00215 1.21018 0.94234 0.97448 1.01007 0.91202 0.91709 0.91696 0.86279 0.86162 0.90707 0.91277 0.91279 0.90881 0.92489 0.92625 0.91742 0.95135 0.90718 0.92423 0.91486 0.95645 0.95725 0.92741 0.93091 0.91572 0.90976 0.95041 0.86064 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.00 0.36 -0.40 16 2 C -0.10 -0.88 5.88 -104.63 -0.62 -1.49 16 3 C -0.12 -1.11 9.70 -39.59 -0.38 -1.50 16 4 C -0.11 -1.12 9.70 -39.58 -0.38 -1.50 16 5 C -0.08 -0.81 5.13 -104.63 -0.54 -1.35 16 6 C -0.08 -0.74 5.19 -27.89 -0.14 -0.89 16 7 C -0.11 -1.23 4.38 -26.73 -0.12 -1.35 16 8 C 0.08 1.00 2.14 -67.71 -0.14 0.86 16 9 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 10 C -0.15 -1.58 8.84 37.16 0.33 -1.25 16 11 N -0.53 -8.28 4.58 -226.49 -1.04 -9.32 16 12 C 0.06 0.90 5.14 -3.77 -0.02 0.89 16 13 C 0.06 1.28 5.15 -3.76 -0.02 1.26 16 14 N -0.54 -11.47 4.92 -235.91 -1.16 -12.62 16 15 C 0.15 3.77 4.25 -4.98 -0.02 3.75 16 16 C -0.55 -15.43 8.25 -34.44 -0.28 -15.71 16 17 H 0.08 2.39 6.07 -52.49 -0.32 2.07 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 20 Si 0.88 21.62 27.38 -169.99 -4.65 16.97 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.27 -6.29 6.68 56.52 0.38 -5.91 16 24 C 0.06 1.21 5.37 -3.76 -0.02 1.18 16 25 C 0.06 0.95 5.38 -3.77 -0.02 0.93 16 26 C -0.11 -1.10 9.70 -39.58 -0.38 -1.48 16 27 C -0.12 -1.11 9.70 -39.58 -0.38 -1.49 16 28 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 29 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 30 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 33 H 0.07 0.63 6.37 -51.93 -0.33 0.30 16 34 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 35 H 0.07 0.82 5.91 -51.93 -0.31 0.51 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.50 6.51 -51.93 -0.34 0.16 16 38 H 0.05 0.60 6.42 -51.93 -0.33 0.27 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 1.12 5.89 -51.93 -0.31 0.81 16 42 H 0.06 1.34 6.32 -51.93 -0.33 1.01 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.03 0.63 7.40 -51.93 -0.38 0.24 16 45 H 0.02 0.61 7.32 -51.93 -0.38 0.23 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.05 1.14 7.13 -51.93 -0.37 0.77 16 48 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 49 H 0.07 1.03 6.25 -51.93 -0.32 0.70 16 50 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 51 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 52 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 392.57 15.07 5.92 5.92 Total: -1.00 -30.81 392.57 -12.26 -43.07 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -9.21 Total: 0.43 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -2.89 Total: -17.59 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -1.42 Total: -48.80 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.65 Total: 16.97 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.81 -12.26 -43.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601316404.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.172 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds