Wall clock time and date at job start Tue Mar 31 2020 12:10:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.38229 * 120.00172 * 2 1
4 4 C 1.38237 * 119.99772 * 180.23853 * 3 2 1
5 5 C 1.38237 * 120.00223 * 359.49381 * 4 3 2
6 6 C 1.50696 * 120.00236 * 180.28076 * 5 4 3
7 7 C 1.52999 * 109.47641 * 89.99377 * 6 5 4
8 8 C 1.52996 * 109.47369 * 176.26408 * 7 6 5
9 9 H 1.09006 * 109.47148 * 54.24610 * 8 7 6
10 10 C 1.53000 * 109.47336 * 294.25054 * 8 7 6
11 11 N 1.46901 * 109.47331 * 174.24681 * 8 7 6
12 12 C 1.46952 * 110.99649 * 307.43949 * 11 8 7
13 13 C 1.53053 * 109.36175 * 176.81051 * 12 11 8
14 14 N 1.46958 * 109.36704 * 58.39880 * 13 12 11
15 15 C 1.46901 * 111.00378 * 176.81154 * 14 13 12
16 16 C 1.50699 * 109.46594 * 53.75308 * 15 14 13
17 17 H 1.08000 * 120.00713 * 4.58850 * 16 15 14
18 18 C 1.37878 * 119.99338 * 184.59228 * 16 15 14
19 19 N 1.31520 * 119.99690 * 180.02562 * 18 16 15
20 20 Si 1.86797 * 120.00228 * 359.97438 * 18 16 15
21 21 H 1.48504 * 109.46979 * 90.00608 * 20 18 16
22 22 H 1.48503 * 109.47260 * 210.00129 * 20 18 16
23 23 H 1.48494 * 109.47369 * 330.00452 * 20 18 16
24 24 C 1.46962 * 110.87910 * 300.68157 * 14 13 12
25 25 C 1.46953 * 110.99921 * 183.63443 * 11 8 7
26 26 C 1.38229 * 119.99632 * 0.25128 * 5 4 3
27 27 C 1.38235 * 119.99613 * 179.73005 * 2 1 3
28 28 H 1.09011 * 109.46935 * 270.27602 * 1 2 3
29 29 H 1.09002 * 109.47143 * 30.26747 * 1 2 3
30 30 H 1.08997 * 109.47568 * 150.27409 * 1 2 3
31 31 H 1.07999 * 120.00468 * 0.02562 * 3 2 1
32 32 H 1.08007 * 120.00123 * 179.76203 * 4 3 2
33 33 H 1.09003 * 109.46892 * 210.00109 * 6 5 4
34 34 H 1.09007 * 109.46909 * 329.99409 * 6 5 4
35 35 H 1.08999 * 109.47128 * 296.26787 * 7 6 5
36 36 H 1.09000 * 109.46759 * 56.26041 * 7 6 5
37 37 H 1.09003 * 109.47291 * 59.99389 * 10 8 7
38 38 H 1.08998 * 109.47343 * 180.02562 * 10 8 7
39 39 H 1.09006 * 109.46640 * 299.99867 * 10 8 7
40 40 H 1.09006 * 109.48868 * 296.77223 * 12 11 8
41 41 H 1.08999 * 109.49566 * 56.84330 * 12 11 8
42 42 H 1.09002 * 109.48987 * 298.43122 * 13 12 11
43 43 H 1.08996 * 109.48995 * 178.36333 * 13 12 11
44 44 H 1.09005 * 109.46968 * 173.74941 * 15 14 13
45 45 H 1.08993 * 109.46677 * 293.75460 * 15 14 13
46 46 H 0.97003 * 120.00110 * 179.97438 * 19 18 16
47 47 H 1.08993 * 109.48735 * 299.35072 * 24 14 13
48 48 H 1.08999 * 109.48721 * 179.28390 * 24 14 13
49 49 H 1.08999 * 109.49364 * 303.15916 * 25 11 8
50 50 H 1.09005 * 109.48626 * 63.20562 * 25 11 8
51 51 H 1.08002 * 120.00217 * 180.02562 * 26 5 4
52 52 H 1.07999 * 120.00153 * 359.97438 * 27 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1971 0.0000
4 6 3.5805 1.1970 -0.0050
5 6 4.2717 -0.0002 0.0006
6 6 5.7787 -0.0002 0.0016
7 6 6.2879 0.0061 1.4443
8 6 7.8149 -0.0880 1.4467
9 1 8.2288 0.7062 0.8252
10 6 8.2431 -1.4470 0.8895
11 7 8.3124 0.0565 2.8213
12 6 7.7742 1.2702 3.4512
13 6 8.2511 1.3421 4.9038
14 7 9.7203 1.3432 4.9349
15 6 10.2177 1.4876 6.3096
16 6 9.5956 0.4285 7.1826
17 1 8.9585 -0.3261 6.7455
18 6 9.8398 0.4230 8.5396
19 7 9.2973 -0.5016 9.3016
20 14 10.9422 1.7277 9.2956
21 1 10.1202 2.8966 9.6999
22 1 11.6262 1.1673 10.4887
23 1 11.9565 2.1567 8.2995
24 6 10.2584 0.1294 4.3049
25 6 9.7816 0.0575 2.8523
26 6 3.5805 -1.1972 0.0059
27 6 2.1981 -1.1972 0.0056
28 1 -0.3633 0.0050 1.0278
29 1 -0.3633 0.8876 -0.5180
30 1 -0.3634 -0.8924 -0.5095
31 1 1.6583 2.1324 0.0004
32 1 4.1206 2.1323 -0.0089
33 1 6.1422 -0.8925 -0.5082
34 1 6.1423 0.8875 -0.5160
35 1 5.9800 0.9298 1.9342
36 1 5.8705 -0.8461 1.9806
37 1 7.8740 -1.5542 -0.1305
38 1 9.3310 -1.5142 0.8916
39 1 7.8292 -2.2412 1.5110
40 1 8.1262 2.1479 2.9091
41 1 6.6849 1.2401 3.4272
42 1 7.8764 0.4782 5.4528
43 1 7.8770 2.2564 5.3645
44 1 11.3019 1.3743 6.3174
45 1 9.9526 2.4740 6.6900
46 1 9.4693 -0.5058 10.2562
47 1 9.9065 -0.7482 4.8470
48 1 11.3477 0.1596 4.3290
49 1 10.1557 -0.8567 2.3916
50 1 10.1563 0.9213 2.3031
51 1 4.1204 -2.1326 0.0107
52 1 1.6580 -2.1324 0.0105
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601316404.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:10:27
Heat of formation + Delta-G solvation = 3.884070 kcal
Electronic energy + Delta-G solvation = -26377.833241 eV
Core-core repulsion = 22954.633704 eV
Total energy + Delta-G solvation = -3423.199538 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-40.66958 -40.16584 -37.85791 -35.54426 -34.48422 -32.97189 -32.01899 -31.76628
-30.55590 -29.29556 -27.49224 -26.52279 -24.73414 -23.77307 -23.57454 -23.15783
-21.56361 -21.00386 -20.60325 -18.88098 -17.66261 -16.81842 -16.58001 -16.27845
-16.05305 -15.90711 -15.82398 -15.73777 -15.42676 -15.06099 -14.62768 -14.39923
-14.34025 -14.23011 -14.06480 -13.75309 -13.61502 -13.40871 -13.12053 -12.99297
-12.89737 -12.68657 -12.52018 -12.32333 -12.26214 -12.16334 -12.09397 -11.98958
-11.85909 -11.73656 -11.71736 -11.46170 -11.29800 -11.08951 -10.79333 -9.78785
-9.31716 -9.22217 -8.98777 -8.31617 -6.37000 0.45992 0.53883 1.34896
1.36079 1.48523 2.33309 2.81162 2.99481 3.03010 3.31216 3.75620
3.90328 4.02599 4.04526 4.07816 4.19665 4.21620 4.24800 4.35969
4.43281 4.47796 4.52095 4.53591 4.58650 4.65017 4.66390 4.71500
4.78234 4.82980 4.84285 4.88842 4.91936 5.00045 5.02964 5.03494
5.08295 5.12240 5.15393 5.17571 5.23283 5.26718 5.32343 5.42632
5.46790 5.50903 5.56634 5.74455 5.79524 6.05935 6.15308 6.18534
6.26959 6.37348 6.41755 6.70340 7.29548 8.84815
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.017092 B = 0.002474 C = 0.002299
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1637.831921 B =11315.674906 C =12174.726037
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.106 4.106
3 C -0.131 4.131
4 C -0.126 4.126
5 C -0.095 4.095
6 C -0.071 4.071
7 C -0.102 4.102
8 C 0.084 3.916
9 H 0.047 0.953
10 C -0.142 4.142
11 N -0.551 5.551
12 C 0.069 3.931
13 C 0.066 3.934
14 N -0.531 5.531
15 C 0.160 3.840
16 C -0.548 4.548
17 H 0.033 0.967
18 C 0.008 3.992
19 N -0.948 5.948
20 Si 0.952 3.048
21 H -0.266 1.266
22 H -0.284 1.284
23 H -0.246 1.246
24 C 0.061 3.939
25 C 0.070 3.930
26 C -0.126 4.126
27 C -0.132 4.132
28 H 0.072 0.928
29 H 0.074 0.926
30 H 0.073 0.927
31 H 0.134 0.866
32 H 0.130 0.870
33 H 0.085 0.915
34 H 0.079 0.921
35 H 0.061 0.939
36 H 0.055 0.945
37 H 0.081 0.919
38 H 0.056 0.944
39 H 0.050 0.950
40 H 0.043 0.957
41 H 0.087 0.913
42 H 0.014 0.986
43 H 0.066 0.934
44 H 0.029 0.971
45 H 0.030 0.970
46 H 0.266 0.734
47 H 0.011 0.989
48 H 0.074 0.926
49 H 0.092 0.908
50 H 0.044 0.956
51 H 0.129 0.871
52 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.375 2.410 -24.527 27.144
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.106 4.106
3 C -0.149 4.149
4 C -0.144 4.144
5 C -0.095 4.095
6 C -0.108 4.108
7 C -0.140 4.140
8 C -0.023 4.023
9 H 0.064 0.936
10 C -0.200 4.200
11 N -0.277 5.277
12 C -0.059 4.059
13 C -0.063 4.063
14 N -0.254 5.254
15 C 0.033 3.967
16 C -0.587 4.587
17 H 0.051 0.949
18 C -0.189 4.189
19 N -0.589 5.589
20 Si 0.775 3.225
21 H -0.191 1.191
22 H -0.210 1.210
23 H -0.170 1.170
24 C -0.067 4.067
25 C -0.057 4.057
26 C -0.143 4.143
27 C -0.150 4.150
28 H 0.090 0.910
29 H 0.093 0.907
30 H 0.092 0.908
31 H 0.152 0.848
32 H 0.148 0.852
33 H 0.103 0.897
34 H 0.098 0.902
35 H 0.079 0.921
36 H 0.074 0.926
37 H 0.100 0.900
38 H 0.075 0.925
39 H 0.069 0.931
40 H 0.061 0.939
41 H 0.105 0.895
42 H 0.033 0.967
43 H 0.084 0.916
44 H 0.048 0.952
45 H 0.048 0.952
46 H 0.075 0.925
47 H 0.029 0.971
48 H 0.093 0.907
49 H 0.110 0.890
50 H 0.062 0.938
51 H 0.147 0.853
52 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges -11.378 2.353 -24.373 27.001
hybrid contribution 0.317 0.049 1.330 1.369
sum -11.061 2.402 -23.043 25.673
Atomic orbital electron populations
1.20818 0.89823 1.03530 1.02749 1.20255 0.97355 0.93235 0.99771
1.21290 0.94377 0.98289 1.00951 1.21284 0.94574 0.98124 1.00435
1.20050 0.96238 0.93326 0.99871 1.20591 0.90120 1.03854 0.96247
1.21624 0.93673 1.02075 0.96633 1.21667 0.95037 0.98222 0.87379
0.93551 1.21902 1.01400 0.95566 1.01109 1.62118 1.08253 1.38309
1.19045 1.22137 0.99726 0.90872 0.93179 1.21948 0.88494 0.99767
0.96104 1.62663 1.07992 1.36504 1.18277 1.20031 0.95496 0.95266
0.85947 1.21884 1.30017 1.13419 0.93332 0.94900 1.25966 0.97118
0.98065 0.97782 1.70095 1.46330 1.36515 1.05942 0.85636 0.79631
0.78938 0.78252 1.19146 1.20980 1.16969 1.22022 0.99038 0.91188
0.94488 1.22109 0.87367 1.01341 0.94931 1.21276 0.94564 0.98158
1.00350 1.21293 0.94386 0.98300 1.00977 0.90952 0.90731 0.90767
0.84835 0.85215 0.89665 0.90247 0.92090 0.92581 0.89994 0.92466
0.93093 0.93926 0.89493 0.96745 0.91585 0.95244 0.95217 0.92535
0.97073 0.90733 0.88998 0.93831 0.85260 0.84901
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.35 10.01 71.24 0.71 -0.64 16
2 C -0.11 -1.83 5.88 -19.87 -0.12 -1.95 16
3 C -0.13 -2.31 9.70 22.27 0.22 -2.09 16
4 C -0.13 -2.33 9.70 22.27 0.22 -2.11 16
5 C -0.09 -1.79 5.13 -19.87 -0.10 -1.89 16
6 C -0.07 -1.16 5.19 29.85 0.16 -1.01 16
7 C -0.10 -2.15 4.38 30.59 0.13 -2.02 16
8 C 0.08 1.89 2.14 44.91 0.10 1.99 16
9 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16
10 C -0.14 -2.76 8.84 71.98 0.64 -2.13 16
11 N -0.55 -16.69 4.58 -870.47 -3.98 -20.67 16
12 C 0.07 2.19 5.14 86.31 0.44 2.63 16
13 C 0.07 2.70 5.15 86.31 0.44 3.15 16
14 N -0.53 -22.67 4.92 -900.27 -4.43 -27.10 16
15 C 0.16 7.82 4.25 85.56 0.36 8.19 16
16 C -0.55 -31.91 8.25 25.60 0.21 -31.70 16
17 H 0.03 2.17 6.07 -2.91 -0.02 2.15 16
18 C 0.01 0.50 5.47 84.65 0.46 0.96 16
19 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16
20 Si 0.95 44.59 27.38 68.60 1.88 46.47 16
21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16
22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16
23 H -0.25 -10.71 6.68 99.48 0.66 -10.04 16
24 C 0.06 2.41 5.37 86.31 0.46 2.88 16
25 C 0.07 2.14 5.38 86.31 0.46 2.60 16
26 C -0.13 -2.35 9.70 22.27 0.22 -2.13 16
27 C -0.13 -2.34 9.70 22.27 0.22 -2.13 16
28 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16
29 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16
30 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16
31 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16
32 H 0.13 2.03 8.06 -2.91 -0.02 2.00 16
33 H 0.08 1.22 6.37 -2.39 -0.02 1.20 16
34 H 0.08 1.16 8.09 -2.38 -0.02 1.14 16
35 H 0.06 1.37 5.91 -2.39 -0.01 1.36 16
36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16
37 H 0.08 1.19 6.51 -2.39 -0.02 1.17 16
38 H 0.06 1.09 6.42 -2.39 -0.02 1.08 16
39 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16
40 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16
41 H 0.09 2.55 5.89 -2.39 -0.01 2.53 16
42 H 0.01 0.71 6.32 -2.39 -0.02 0.69 16
43 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16
44 H 0.03 1.42 7.40 -2.38 -0.02 1.40 16
45 H 0.03 1.43 7.32 -2.39 -0.02 1.41 16
46 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16
47 H 0.01 0.52 7.13 -2.39 -0.02 0.50 16
48 H 0.07 2.76 8.07 -2.39 -0.02 2.74 16
49 H 0.09 2.44 6.25 -2.39 -0.01 2.42 16
50 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16
51 H 0.13 2.08 8.06 -2.91 -0.02 2.05 16
52 H 0.13 1.87 8.06 -2.91 -0.02 1.84 16
Total: -1.00 -68.90 392.57 -0.17 -69.07
By element:
Atomic # 1 Polarization: 18.77 SS G_CDS: 0.83 Total: 19.60 kcal
Atomic # 6 Polarization: -32.62 SS G_CDS: 5.23 Total: -27.39 kcal
Atomic # 7 Polarization: -99.64 SS G_CDS: -8.11 Total: -107.75 kcal
Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.47 kcal
Total: -68.90 -0.17 -69.07 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601316404.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.954 kcal
(2) G-P(sol) polarization free energy of solvation -68.898 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.056 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.172 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.070 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.884 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds