Wall clock time and date at job start Tue Mar 31 2020 12:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38229 * 120.00172 * 2 1 4 4 C 1.38237 * 119.99772 * 180.23853 * 3 2 1 5 5 C 1.38237 * 120.00223 * 359.49381 * 4 3 2 6 6 C 1.50696 * 120.00236 * 180.28076 * 5 4 3 7 7 C 1.52999 * 109.47641 * 89.99377 * 6 5 4 8 8 C 1.52996 * 109.47369 * 176.26408 * 7 6 5 9 9 H 1.09006 * 109.47148 * 54.24610 * 8 7 6 10 10 C 1.53000 * 109.47336 * 294.25054 * 8 7 6 11 11 N 1.46901 * 109.47331 * 174.24681 * 8 7 6 12 12 C 1.46952 * 110.99649 * 307.43949 * 11 8 7 13 13 C 1.53053 * 109.36175 * 176.81051 * 12 11 8 14 14 N 1.46958 * 109.36704 * 58.39880 * 13 12 11 15 15 C 1.46901 * 111.00378 * 176.81154 * 14 13 12 16 16 C 1.50699 * 109.46594 * 53.75308 * 15 14 13 17 17 H 1.08000 * 120.00713 * 4.58850 * 16 15 14 18 18 C 1.37878 * 119.99338 * 184.59228 * 16 15 14 19 19 N 1.31520 * 119.99690 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00228 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46979 * 90.00608 * 20 18 16 22 22 H 1.48503 * 109.47260 * 210.00129 * 20 18 16 23 23 H 1.48494 * 109.47369 * 330.00452 * 20 18 16 24 24 C 1.46962 * 110.87910 * 300.68157 * 14 13 12 25 25 C 1.46953 * 110.99921 * 183.63443 * 11 8 7 26 26 C 1.38229 * 119.99632 * 0.25128 * 5 4 3 27 27 C 1.38235 * 119.99613 * 179.73005 * 2 1 3 28 28 H 1.09011 * 109.46935 * 270.27602 * 1 2 3 29 29 H 1.09002 * 109.47143 * 30.26747 * 1 2 3 30 30 H 1.08997 * 109.47568 * 150.27409 * 1 2 3 31 31 H 1.07999 * 120.00468 * 0.02562 * 3 2 1 32 32 H 1.08007 * 120.00123 * 179.76203 * 4 3 2 33 33 H 1.09003 * 109.46892 * 210.00109 * 6 5 4 34 34 H 1.09007 * 109.46909 * 329.99409 * 6 5 4 35 35 H 1.08999 * 109.47128 * 296.26787 * 7 6 5 36 36 H 1.09000 * 109.46759 * 56.26041 * 7 6 5 37 37 H 1.09003 * 109.47291 * 59.99389 * 10 8 7 38 38 H 1.08998 * 109.47343 * 180.02562 * 10 8 7 39 39 H 1.09006 * 109.46640 * 299.99867 * 10 8 7 40 40 H 1.09006 * 109.48868 * 296.77223 * 12 11 8 41 41 H 1.08999 * 109.49566 * 56.84330 * 12 11 8 42 42 H 1.09002 * 109.48987 * 298.43122 * 13 12 11 43 43 H 1.08996 * 109.48995 * 178.36333 * 13 12 11 44 44 H 1.09005 * 109.46968 * 173.74941 * 15 14 13 45 45 H 1.08993 * 109.46677 * 293.75460 * 15 14 13 46 46 H 0.97003 * 120.00110 * 179.97438 * 19 18 16 47 47 H 1.08993 * 109.48735 * 299.35072 * 24 14 13 48 48 H 1.08999 * 109.48721 * 179.28390 * 24 14 13 49 49 H 1.08999 * 109.49364 * 303.15916 * 25 11 8 50 50 H 1.09005 * 109.48626 * 63.20562 * 25 11 8 51 51 H 1.08002 * 120.00217 * 180.02562 * 26 5 4 52 52 H 1.07999 * 120.00153 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1970 -0.0050 5 6 4.2717 -0.0002 0.0006 6 6 5.7787 -0.0002 0.0016 7 6 6.2879 0.0061 1.4443 8 6 7.8149 -0.0880 1.4467 9 1 8.2288 0.7062 0.8252 10 6 8.2431 -1.4470 0.8895 11 7 8.3124 0.0565 2.8213 12 6 7.7742 1.2702 3.4512 13 6 8.2511 1.3421 4.9038 14 7 9.7203 1.3432 4.9349 15 6 10.2177 1.4876 6.3096 16 6 9.5956 0.4285 7.1826 17 1 8.9585 -0.3261 6.7455 18 6 9.8398 0.4230 8.5396 19 7 9.2973 -0.5016 9.3016 20 14 10.9422 1.7277 9.2956 21 1 10.1202 2.8966 9.6999 22 1 11.6262 1.1673 10.4887 23 1 11.9565 2.1567 8.2995 24 6 10.2584 0.1294 4.3049 25 6 9.7816 0.0575 2.8523 26 6 3.5805 -1.1972 0.0059 27 6 2.1981 -1.1972 0.0056 28 1 -0.3633 0.0050 1.0278 29 1 -0.3633 0.8876 -0.5180 30 1 -0.3634 -0.8924 -0.5095 31 1 1.6583 2.1324 0.0004 32 1 4.1206 2.1323 -0.0089 33 1 6.1422 -0.8925 -0.5082 34 1 6.1423 0.8875 -0.5160 35 1 5.9800 0.9298 1.9342 36 1 5.8705 -0.8461 1.9806 37 1 7.8740 -1.5542 -0.1305 38 1 9.3310 -1.5142 0.8916 39 1 7.8292 -2.2412 1.5110 40 1 8.1262 2.1479 2.9091 41 1 6.6849 1.2401 3.4272 42 1 7.8764 0.4782 5.4528 43 1 7.8770 2.2564 5.3645 44 1 11.3019 1.3743 6.3174 45 1 9.9526 2.4740 6.6900 46 1 9.4693 -0.5058 10.2562 47 1 9.9065 -0.7482 4.8470 48 1 11.3477 0.1596 4.3290 49 1 10.1557 -0.8567 2.3916 50 1 10.1563 0.9213 2.3031 51 1 4.1204 -2.1326 0.0107 52 1 1.6580 -2.1324 0.0105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601316404.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:27 Heat of formation + Delta-G solvation = 3.884070 kcal Electronic energy + Delta-G solvation = -26377.833241 eV Core-core repulsion = 22954.633704 eV Total energy + Delta-G solvation = -3423.199538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.66958 -40.16584 -37.85791 -35.54426 -34.48422 -32.97189 -32.01899 -31.76628 -30.55590 -29.29556 -27.49224 -26.52279 -24.73414 -23.77307 -23.57454 -23.15783 -21.56361 -21.00386 -20.60325 -18.88098 -17.66261 -16.81842 -16.58001 -16.27845 -16.05305 -15.90711 -15.82398 -15.73777 -15.42676 -15.06099 -14.62768 -14.39923 -14.34025 -14.23011 -14.06480 -13.75309 -13.61502 -13.40871 -13.12053 -12.99297 -12.89737 -12.68657 -12.52018 -12.32333 -12.26214 -12.16334 -12.09397 -11.98958 -11.85909 -11.73656 -11.71736 -11.46170 -11.29800 -11.08951 -10.79333 -9.78785 -9.31716 -9.22217 -8.98777 -8.31617 -6.37000 0.45992 0.53883 1.34896 1.36079 1.48523 2.33309 2.81162 2.99481 3.03010 3.31216 3.75620 3.90328 4.02599 4.04526 4.07816 4.19665 4.21620 4.24800 4.35969 4.43281 4.47796 4.52095 4.53591 4.58650 4.65017 4.66390 4.71500 4.78234 4.82980 4.84285 4.88842 4.91936 5.00045 5.02964 5.03494 5.08295 5.12240 5.15393 5.17571 5.23283 5.26718 5.32343 5.42632 5.46790 5.50903 5.56634 5.74455 5.79524 6.05935 6.15308 6.18534 6.26959 6.37348 6.41755 6.70340 7.29548 8.84815 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017092 B = 0.002474 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.831921 B =11315.674906 C =12174.726037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.106 4.106 3 C -0.131 4.131 4 C -0.126 4.126 5 C -0.095 4.095 6 C -0.071 4.071 7 C -0.102 4.102 8 C 0.084 3.916 9 H 0.047 0.953 10 C -0.142 4.142 11 N -0.551 5.551 12 C 0.069 3.931 13 C 0.066 3.934 14 N -0.531 5.531 15 C 0.160 3.840 16 C -0.548 4.548 17 H 0.033 0.967 18 C 0.008 3.992 19 N -0.948 5.948 20 Si 0.952 3.048 21 H -0.266 1.266 22 H -0.284 1.284 23 H -0.246 1.246 24 C 0.061 3.939 25 C 0.070 3.930 26 C -0.126 4.126 27 C -0.132 4.132 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.043 0.957 41 H 0.087 0.913 42 H 0.014 0.986 43 H 0.066 0.934 44 H 0.029 0.971 45 H 0.030 0.970 46 H 0.266 0.734 47 H 0.011 0.989 48 H 0.074 0.926 49 H 0.092 0.908 50 H 0.044 0.956 51 H 0.129 0.871 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.375 2.410 -24.527 27.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.106 4.106 3 C -0.149 4.149 4 C -0.144 4.144 5 C -0.095 4.095 6 C -0.108 4.108 7 C -0.140 4.140 8 C -0.023 4.023 9 H 0.064 0.936 10 C -0.200 4.200 11 N -0.277 5.277 12 C -0.059 4.059 13 C -0.063 4.063 14 N -0.254 5.254 15 C 0.033 3.967 16 C -0.587 4.587 17 H 0.051 0.949 18 C -0.189 4.189 19 N -0.589 5.589 20 Si 0.775 3.225 21 H -0.191 1.191 22 H -0.210 1.210 23 H -0.170 1.170 24 C -0.067 4.067 25 C -0.057 4.057 26 C -0.143 4.143 27 C -0.150 4.150 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.152 0.848 32 H 0.148 0.852 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.105 0.895 42 H 0.033 0.967 43 H 0.084 0.916 44 H 0.048 0.952 45 H 0.048 0.952 46 H 0.075 0.925 47 H 0.029 0.971 48 H 0.093 0.907 49 H 0.110 0.890 50 H 0.062 0.938 51 H 0.147 0.853 52 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.378 2.353 -24.373 27.001 hybrid contribution 0.317 0.049 1.330 1.369 sum -11.061 2.402 -23.043 25.673 Atomic orbital electron populations 1.20818 0.89823 1.03530 1.02749 1.20255 0.97355 0.93235 0.99771 1.21290 0.94377 0.98289 1.00951 1.21284 0.94574 0.98124 1.00435 1.20050 0.96238 0.93326 0.99871 1.20591 0.90120 1.03854 0.96247 1.21624 0.93673 1.02075 0.96633 1.21667 0.95037 0.98222 0.87379 0.93551 1.21902 1.01400 0.95566 1.01109 1.62118 1.08253 1.38309 1.19045 1.22137 0.99726 0.90872 0.93179 1.21948 0.88494 0.99767 0.96104 1.62663 1.07992 1.36504 1.18277 1.20031 0.95496 0.95266 0.85947 1.21884 1.30017 1.13419 0.93332 0.94900 1.25966 0.97118 0.98065 0.97782 1.70095 1.46330 1.36515 1.05942 0.85636 0.79631 0.78938 0.78252 1.19146 1.20980 1.16969 1.22022 0.99038 0.91188 0.94488 1.22109 0.87367 1.01341 0.94931 1.21276 0.94564 0.98158 1.00350 1.21293 0.94386 0.98300 1.00977 0.90952 0.90731 0.90767 0.84835 0.85215 0.89665 0.90247 0.92090 0.92581 0.89994 0.92466 0.93093 0.93926 0.89493 0.96745 0.91585 0.95244 0.95217 0.92535 0.97073 0.90733 0.88998 0.93831 0.85260 0.84901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 71.24 0.71 -0.64 16 2 C -0.11 -1.83 5.88 -19.87 -0.12 -1.95 16 3 C -0.13 -2.31 9.70 22.27 0.22 -2.09 16 4 C -0.13 -2.33 9.70 22.27 0.22 -2.11 16 5 C -0.09 -1.79 5.13 -19.87 -0.10 -1.89 16 6 C -0.07 -1.16 5.19 29.85 0.16 -1.01 16 7 C -0.10 -2.15 4.38 30.59 0.13 -2.02 16 8 C 0.08 1.89 2.14 44.91 0.10 1.99 16 9 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 10 C -0.14 -2.76 8.84 71.98 0.64 -2.13 16 11 N -0.55 -16.69 4.58 -870.47 -3.98 -20.67 16 12 C 0.07 2.19 5.14 86.31 0.44 2.63 16 13 C 0.07 2.70 5.15 86.31 0.44 3.15 16 14 N -0.53 -22.67 4.92 -900.27 -4.43 -27.10 16 15 C 0.16 7.82 4.25 85.56 0.36 8.19 16 16 C -0.55 -31.91 8.25 25.60 0.21 -31.70 16 17 H 0.03 2.17 6.07 -2.91 -0.02 2.15 16 18 C 0.01 0.50 5.47 84.65 0.46 0.96 16 19 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 20 Si 0.95 44.59 27.38 68.60 1.88 46.47 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.25 -10.71 6.68 99.48 0.66 -10.04 16 24 C 0.06 2.41 5.37 86.31 0.46 2.88 16 25 C 0.07 2.14 5.38 86.31 0.46 2.60 16 26 C -0.13 -2.35 9.70 22.27 0.22 -2.13 16 27 C -0.13 -2.34 9.70 22.27 0.22 -2.13 16 28 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 30 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 31 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 32 H 0.13 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.08 1.22 6.37 -2.39 -0.02 1.20 16 34 H 0.08 1.16 8.09 -2.38 -0.02 1.14 16 35 H 0.06 1.37 5.91 -2.39 -0.01 1.36 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.08 1.19 6.51 -2.39 -0.02 1.17 16 38 H 0.06 1.09 6.42 -2.39 -0.02 1.08 16 39 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.09 2.55 5.89 -2.39 -0.01 2.53 16 42 H 0.01 0.71 6.32 -2.39 -0.02 0.69 16 43 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 44 H 0.03 1.42 7.40 -2.38 -0.02 1.40 16 45 H 0.03 1.43 7.32 -2.39 -0.02 1.41 16 46 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 47 H 0.01 0.52 7.13 -2.39 -0.02 0.50 16 48 H 0.07 2.76 8.07 -2.39 -0.02 2.74 16 49 H 0.09 2.44 6.25 -2.39 -0.01 2.42 16 50 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 51 H 0.13 2.08 8.06 -2.91 -0.02 2.05 16 52 H 0.13 1.87 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -68.90 392.57 -0.17 -69.07 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.83 Total: 19.60 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: 5.23 Total: -27.39 kcal Atomic # 7 Polarization: -99.64 SS G_CDS: -8.11 Total: -107.75 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.47 kcal Total: -68.90 -0.17 -69.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601316404.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.954 kcal (2) G-P(sol) polarization free energy of solvation -68.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds