Wall clock time and date at job start Tue Mar 31 2020 12:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38301 * 119.96431 * 2 1 4 4 C 1.38257 * 120.15378 * 179.97438 * 3 2 1 5 5 C 1.38136 * 120.07218 * 359.74751 * 4 3 2 6 6 C 1.38884 * 119.92259 * 0.52598 * 5 4 3 7 7 N 1.39669 * 120.07572 * 179.74905 * 6 5 4 8 8 C 1.46958 * 111.00063 * 63.52137 * 7 6 5 9 9 C 1.53055 * 109.36173 * 176.81234 * 8 7 6 10 10 N 1.46957 * 109.36522 * 58.40873 * 9 8 7 11 11 C 1.46901 * 110.99921 * 176.81007 * 10 9 8 12 12 C 1.53004 * 109.47068 * 307.66571 * 11 10 9 13 13 H 1.09003 * 109.46635 * 57.74154 * 12 11 10 14 14 C 1.53001 * 109.46834 * 297.74280 * 12 11 10 15 15 C 1.52996 * 109.47321 * 177.73940 * 12 11 10 16 16 C 1.50692 * 109.47401 * 185.00027 * 15 12 11 17 17 H 1.07997 * 119.99732 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00118 * 179.97438 * 16 15 12 19 19 N 1.31518 * 120.00005 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99907 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47170 * 60.00310 * 20 18 16 22 22 H 1.48506 * 109.47096 * 180.02562 * 20 18 16 23 23 H 1.48509 * 109.47096 * 299.99901 * 20 18 16 24 24 C 1.46958 * 110.87533 * 300.67328 * 10 9 8 25 25 C 1.46957 * 110.99875 * 299.72465 * 7 6 5 26 26 C 1.38081 * 119.96035 * 180.02562 * 2 1 3 27 27 C 1.50696 * 120.03965 * 359.97438 * 26 2 1 28 28 H 1.08994 * 109.47702 * 269.97965 * 1 2 3 29 29 H 1.09005 * 109.47051 * 29.97791 * 1 2 3 30 30 H 1.09002 * 109.47388 * 149.97417 * 1 2 3 31 31 H 1.08000 * 119.92702 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.96694 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.03594 * 180.27167 * 5 4 3 34 34 H 1.08995 * 109.48820 * 296.78092 * 8 7 6 35 35 H 1.08996 * 109.48456 * 56.85088 * 8 7 6 36 36 H 1.08999 * 109.49358 * 298.43241 * 9 8 7 37 37 H 1.09003 * 109.48397 * 178.37077 * 9 8 7 38 38 H 1.08998 * 109.47020 * 67.66468 * 11 10 9 39 39 H 1.09001 * 109.46962 * 187.66875 * 11 10 9 40 40 H 1.09001 * 109.46942 * 299.99647 * 14 12 11 41 41 H 1.09002 * 109.47300 * 60.00386 * 14 12 11 42 42 H 1.09011 * 109.46543 * 180.02562 * 14 12 11 43 43 H 1.09006 * 109.47049 * 305.00750 * 15 12 11 44 44 H 1.08999 * 109.46985 * 64.99705 * 15 12 11 45 45 H 0.97003 * 119.99758 * 179.97438 * 19 18 16 46 46 H 1.09004 * 109.49082 * 299.35620 * 24 10 9 47 47 H 1.09002 * 109.50772 * 179.30006 * 24 10 9 48 48 H 1.09003 * 109.49008 * 303.15335 * 25 7 6 49 49 H 1.09000 * 109.49105 * 63.20308 * 25 7 6 50 50 H 1.08999 * 109.47480 * 270.01835 * 27 26 2 51 51 H 1.09002 * 109.47464 * 30.02027 * 27 26 2 52 52 H 1.08998 * 109.47532 * 150.01980 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5803 1.2027 0.0005 5 6 4.2764 0.0096 0.0063 6 6 3.5859 -1.1954 0.0006 7 7 4.2866 -2.4036 0.0011 8 6 5.0744 -2.5550 1.2324 9 6 5.7621 -3.9224 1.2299 10 7 6.6202 -4.0340 0.0422 11 6 7.3572 -5.3048 0.0427 12 6 8.0866 -5.4708 1.3774 13 1 7.3649 -5.4311 2.1932 14 6 9.1075 -4.3433 1.5442 15 6 8.8082 -6.8197 1.4000 16 6 9.4241 -7.0373 2.7580 17 1 9.3116 -6.2886 3.5281 18 6 10.1301 -8.1927 3.0176 19 7 10.2666 -9.1048 2.0799 20 14 10.8929 -8.4628 4.7013 21 1 9.8267 -8.4540 5.7349 22 1 11.5934 -9.7720 4.7232 23 1 11.8655 -7.3767 4.9841 24 6 5.8324 -3.8826 -1.1892 25 6 5.1446 -2.5153 -1.1867 26 6 2.1965 -1.1963 -0.0005 27 6 1.4431 -2.5014 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6559 2.1324 0.0004 32 1 4.1166 2.1401 0.0001 33 1 5.3564 0.0139 0.0112 34 1 5.8279 -1.7690 1.2810 35 1 4.4151 -2.4812 2.0973 36 1 5.0078 -4.7089 1.2089 37 1 6.3701 -4.0252 2.1288 38 1 6.6584 -6.1300 -0.0945 39 1 8.0831 -5.3042 -0.7704 40 1 9.8292 -4.3830 0.7283 41 1 8.5933 -3.3823 1.5282 42 1 9.6275 -4.4619 2.4949 43 1 8.0945 -7.6171 1.1926 44 1 9.5905 -6.8260 0.6410 45 1 10.7637 -9.9175 2.2625 46 1 5.0788 -4.6687 -1.2377 47 1 6.4914 -3.9566 -2.0543 48 1 4.5366 -2.4125 -2.0855 49 1 5.8988 -1.7287 -1.1658 50 1 1.2615 -2.8161 1.0271 51 1 0.4906 -2.3711 -0.5143 52 1 2.0320 -3.2610 -0.5144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602429600.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:01 Heat of formation + Delta-G solvation = 22.447342 kcal Electronic energy + Delta-G solvation = -26800.340628 eV Core-core repulsion = 23377.946054 eV Total energy + Delta-G solvation = -3422.394574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.55586 -38.76543 -36.41868 -34.11790 -33.47155 -32.14170 -31.04213 -30.75652 -28.03002 -26.97585 -26.68150 -26.17658 -24.37001 -23.59056 -22.42395 -21.31843 -21.14541 -19.51081 -18.67113 -17.07608 -16.35732 -16.09334 -15.86401 -15.16962 -14.95313 -14.63644 -14.59189 -14.30832 -14.22581 -14.08568 -13.75710 -13.23679 -13.11573 -12.89891 -12.69267 -12.51156 -12.28890 -12.14126 -12.08582 -11.88909 -11.61849 -11.49269 -11.33291 -11.20924 -11.12768 -11.00205 -10.83888 -10.74431 -10.65324 -10.28581 -10.16312 -9.58343 -9.14027 -8.93608 -8.76414 -8.67714 -8.58100 -8.31312 -7.99412 -5.96418 -3.97562 1.10131 1.19226 3.34977 3.39388 3.41763 3.48931 3.68213 4.15784 4.49183 4.61112 4.69168 4.82721 4.85843 4.97179 5.08319 5.11724 5.25407 5.26875 5.28868 5.35249 5.39148 5.40582 5.50753 5.53517 5.62623 5.63638 5.71288 5.74593 5.77448 5.80040 5.89306 5.92570 6.05772 6.12941 6.14675 6.17549 6.28375 6.34007 6.43154 6.46532 6.54287 6.66382 6.69577 6.82136 7.01578 7.13821 7.20422 7.30467 7.39835 7.45814 7.70307 7.86379 8.03628 8.47502 9.08477 9.65620 11.15044 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026462 B = 0.002345 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.858008 B =11938.940682 C =11978.456065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.087 4.087 3 C -0.123 4.123 4 C -0.115 4.115 5 C -0.149 4.149 6 C 0.095 3.905 7 N -0.502 5.502 8 C 0.066 3.934 9 C 0.053 3.947 10 N -0.536 5.536 11 C 0.062 3.938 12 C -0.086 4.086 13 H 0.057 0.943 14 C -0.123 4.123 15 C 0.028 3.972 16 C -0.512 4.512 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.890 3.110 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.056 3.944 25 C 0.065 3.935 26 C -0.062 4.062 27 C -0.108 4.108 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.045 0.955 35 H 0.076 0.924 36 H 0.040 0.960 37 H 0.093 0.907 38 H 0.028 0.972 39 H 0.070 0.930 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.053 0.947 43 H 0.012 0.988 44 H 0.016 0.984 45 H 0.260 0.740 46 H 0.039 0.961 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.045 0.955 50 H 0.067 0.933 51 H 0.061 0.939 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.357 19.436 -6.800 27.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.134 4.134 5 C -0.169 4.169 6 C 0.001 3.999 7 N -0.224 5.224 8 C -0.061 4.061 9 C -0.075 4.075 10 N -0.261 5.261 11 C -0.065 4.065 12 C -0.104 4.104 13 H 0.075 0.925 14 C -0.180 4.180 15 C -0.009 4.009 16 C -0.551 4.551 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.072 4.072 25 C -0.062 4.062 26 C -0.063 4.063 27 C -0.165 4.165 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.111 0.889 38 H 0.047 0.953 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.031 0.969 44 H 0.034 0.966 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.096 0.904 48 H 0.093 0.907 49 H 0.063 0.937 50 H 0.085 0.915 51 H 0.080 0.920 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.254 19.222 -6.842 27.377 hybrid contribution 0.632 -0.202 0.888 1.108 sum -17.622 19.019 -5.955 26.603 Atomic orbital electron populations 1.20841 0.91230 1.02791 1.02344 1.19710 0.95970 0.92447 1.00624 1.20991 0.94177 0.97338 1.01610 1.20966 0.94204 0.97677 1.00530 1.21677 1.00204 0.93102 1.01915 1.18655 0.92496 0.88435 1.00323 1.59780 1.28459 1.30762 1.03415 1.22237 0.95094 0.97766 0.90993 1.22245 0.94933 0.95283 0.95060 1.62239 1.26527 1.35961 1.01343 1.22297 0.96260 0.87617 1.00345 1.21309 0.96932 0.98441 0.93752 0.92455 1.21591 0.98269 0.96791 1.01337 1.19108 0.94920 0.89809 0.97111 1.21180 1.32791 1.03178 0.97912 0.92684 1.25020 0.96565 0.96214 0.96757 1.69958 1.41898 1.08870 1.32919 0.86697 0.79468 0.77279 0.84778 1.20324 1.21384 1.20287 1.22126 0.95660 0.95743 0.93687 1.22202 0.94367 0.97540 0.92073 1.19661 0.92142 0.95135 0.99378 1.20709 0.98991 0.94469 1.02282 0.91198 0.91766 0.91040 0.86298 0.86295 0.86243 0.93649 0.90570 0.94205 0.88921 0.95333 0.91157 0.94050 0.94127 0.92784 0.96943 0.96572 0.93054 0.94229 0.90368 0.90659 0.93660 0.91464 0.92036 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 9.60 36.00 0.35 -0.43 16 2 C -0.09 -0.81 5.88 -104.66 -0.62 -1.42 16 3 C -0.12 -1.10 9.70 -39.55 -0.38 -1.48 16 4 C -0.12 -1.08 10.04 -39.61 -0.40 -1.48 16 5 C -0.15 -1.60 8.64 -39.38 -0.34 -1.94 16 6 C 0.09 1.08 4.70 -83.79 -0.39 0.68 16 7 N -0.50 -5.95 3.63 -170.95 -0.62 -6.57 16 8 C 0.07 0.82 5.35 -3.76 -0.02 0.80 16 9 C 0.05 0.75 5.12 -3.76 -0.02 0.73 16 10 N -0.54 -7.97 4.15 -234.45 -0.97 -8.94 16 11 C 0.06 1.08 4.55 -3.82 -0.02 1.06 16 12 C -0.09 -1.73 1.86 -90.62 -0.17 -1.90 16 13 H 0.06 1.17 6.11 -51.93 -0.32 0.85 16 14 C -0.12 -2.36 8.80 37.16 0.33 -2.04 16 15 C 0.03 0.72 4.45 -27.89 -0.12 0.59 16 16 C -0.51 -14.32 8.41 -34.44 -0.29 -14.61 16 17 H 0.05 1.50 7.06 -52.49 -0.37 1.13 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 20 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 C 0.06 0.72 5.62 -3.76 -0.02 0.70 16 25 C 0.06 0.75 5.31 -3.76 -0.02 0.73 16 26 C -0.06 -0.65 5.90 -104.42 -0.62 -1.27 16 27 C -0.11 -1.01 9.36 36.00 0.34 -0.67 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 30 H 0.07 0.44 5.94 -51.93 -0.31 0.13 16 31 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 32 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.12 1.27 7.06 -52.49 -0.37 0.90 16 34 H 0.05 0.58 7.43 -51.93 -0.39 0.20 16 35 H 0.08 0.91 8.13 -51.93 -0.42 0.49 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.09 1.41 5.87 -51.93 -0.30 1.11 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.04 0.70 7.62 -51.93 -0.40 0.30 16 42 H 0.05 1.11 6.95 -51.92 -0.36 0.75 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.08 0.80 8.13 -51.93 -0.42 0.38 16 49 H 0.05 0.54 7.25 -51.93 -0.38 0.16 16 50 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.06 0.47 5.95 -51.93 -0.31 0.16 16 52 H 0.08 0.82 7.46 -51.93 -0.39 0.43 16 LS Contribution 395.54 15.07 5.96 5.96 Total: -1.00 -29.81 395.54 -11.79 -41.60 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -9.36 Total: -2.05 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -2.51 Total: -20.45 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: -0.86 Total: -41.80 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.81 -11.79 -41.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602429600.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.050 kcal (2) G-P(sol) polarization free energy of solvation -29.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds