Wall clock time and date at job start Tue Mar 31 2020 12:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38301 * 119.96431 * 2 1 4 4 C 1.38257 * 120.15378 * 179.97438 * 3 2 1 5 5 C 1.38136 * 120.07218 * 359.74751 * 4 3 2 6 6 C 1.38884 * 119.92259 * 0.52598 * 5 4 3 7 7 N 1.39669 * 120.07572 * 179.74905 * 6 5 4 8 8 C 1.46958 * 111.00063 * 63.52137 * 7 6 5 9 9 C 1.53055 * 109.36173 * 176.81234 * 8 7 6 10 10 N 1.46957 * 109.36522 * 58.40873 * 9 8 7 11 11 C 1.46901 * 110.99921 * 176.81007 * 10 9 8 12 12 C 1.53004 * 109.47068 * 307.66571 * 11 10 9 13 13 H 1.09003 * 109.46635 * 57.74154 * 12 11 10 14 14 C 1.53001 * 109.46834 * 297.74280 * 12 11 10 15 15 C 1.52996 * 109.47321 * 177.73940 * 12 11 10 16 16 C 1.50692 * 109.47401 * 185.00027 * 15 12 11 17 17 H 1.07997 * 119.99732 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00118 * 179.97438 * 16 15 12 19 19 N 1.31518 * 120.00005 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99907 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47170 * 60.00310 * 20 18 16 22 22 H 1.48506 * 109.47096 * 180.02562 * 20 18 16 23 23 H 1.48509 * 109.47096 * 299.99901 * 20 18 16 24 24 C 1.46958 * 110.87533 * 300.67328 * 10 9 8 25 25 C 1.46957 * 110.99875 * 299.72465 * 7 6 5 26 26 C 1.38081 * 119.96035 * 180.02562 * 2 1 3 27 27 C 1.50696 * 120.03965 * 359.97438 * 26 2 1 28 28 H 1.08994 * 109.47702 * 269.97965 * 1 2 3 29 29 H 1.09005 * 109.47051 * 29.97791 * 1 2 3 30 30 H 1.09002 * 109.47388 * 149.97417 * 1 2 3 31 31 H 1.08000 * 119.92702 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.96694 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.03594 * 180.27167 * 5 4 3 34 34 H 1.08995 * 109.48820 * 296.78092 * 8 7 6 35 35 H 1.08996 * 109.48456 * 56.85088 * 8 7 6 36 36 H 1.08999 * 109.49358 * 298.43241 * 9 8 7 37 37 H 1.09003 * 109.48397 * 178.37077 * 9 8 7 38 38 H 1.08998 * 109.47020 * 67.66468 * 11 10 9 39 39 H 1.09001 * 109.46962 * 187.66875 * 11 10 9 40 40 H 1.09001 * 109.46942 * 299.99647 * 14 12 11 41 41 H 1.09002 * 109.47300 * 60.00386 * 14 12 11 42 42 H 1.09011 * 109.46543 * 180.02562 * 14 12 11 43 43 H 1.09006 * 109.47049 * 305.00750 * 15 12 11 44 44 H 1.08999 * 109.46985 * 64.99705 * 15 12 11 45 45 H 0.97003 * 119.99758 * 179.97438 * 19 18 16 46 46 H 1.09004 * 109.49082 * 299.35620 * 24 10 9 47 47 H 1.09002 * 109.50772 * 179.30006 * 24 10 9 48 48 H 1.09003 * 109.49008 * 303.15335 * 25 7 6 49 49 H 1.09000 * 109.49105 * 63.20308 * 25 7 6 50 50 H 1.08999 * 109.47480 * 270.01835 * 27 26 2 51 51 H 1.09002 * 109.47464 * 30.02027 * 27 26 2 52 52 H 1.08998 * 109.47532 * 150.01980 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5803 1.2027 0.0005 5 6 4.2764 0.0096 0.0063 6 6 3.5859 -1.1954 0.0006 7 7 4.2866 -2.4036 0.0011 8 6 5.0744 -2.5550 1.2324 9 6 5.7621 -3.9224 1.2299 10 7 6.6202 -4.0340 0.0422 11 6 7.3572 -5.3048 0.0427 12 6 8.0866 -5.4708 1.3774 13 1 7.3649 -5.4311 2.1932 14 6 9.1075 -4.3433 1.5442 15 6 8.8082 -6.8197 1.4000 16 6 9.4241 -7.0373 2.7580 17 1 9.3116 -6.2886 3.5281 18 6 10.1301 -8.1927 3.0176 19 7 10.2666 -9.1048 2.0799 20 14 10.8929 -8.4628 4.7013 21 1 9.8267 -8.4540 5.7349 22 1 11.5934 -9.7720 4.7232 23 1 11.8655 -7.3767 4.9841 24 6 5.8324 -3.8826 -1.1892 25 6 5.1446 -2.5153 -1.1867 26 6 2.1965 -1.1963 -0.0005 27 6 1.4431 -2.5014 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6559 2.1324 0.0004 32 1 4.1166 2.1401 0.0001 33 1 5.3564 0.0139 0.0112 34 1 5.8279 -1.7690 1.2810 35 1 4.4151 -2.4812 2.0973 36 1 5.0078 -4.7089 1.2089 37 1 6.3701 -4.0252 2.1288 38 1 6.6584 -6.1300 -0.0945 39 1 8.0831 -5.3042 -0.7704 40 1 9.8292 -4.3830 0.7283 41 1 8.5933 -3.3823 1.5282 42 1 9.6275 -4.4619 2.4949 43 1 8.0945 -7.6171 1.1926 44 1 9.5905 -6.8260 0.6410 45 1 10.7637 -9.9175 2.2625 46 1 5.0788 -4.6687 -1.2377 47 1 6.4914 -3.9566 -2.0543 48 1 4.5366 -2.4125 -2.0855 49 1 5.8988 -1.7287 -1.1658 50 1 1.2615 -2.8161 1.0271 51 1 0.4906 -2.3711 -0.5143 52 1 2.0320 -3.2610 -0.5144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602429600.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:00 Heat of formation + Delta-G solvation = 7.844154 kcal Electronic energy + Delta-G solvation = -26800.973869 eV Core-core repulsion = 23377.946054 eV Total energy + Delta-G solvation = -3423.027815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.41665 -39.80815 -37.69161 -35.66883 -34.20511 -33.97454 -32.00979 -31.80297 -29.25310 -28.50275 -27.64602 -27.09298 -25.88879 -24.66871 -24.09372 -22.27316 -21.86929 -20.67767 -20.15129 -18.54866 -17.86922 -16.85143 -16.82522 -16.51978 -16.15725 -16.03366 -15.84989 -15.65019 -15.36168 -14.91592 -14.60878 -14.45354 -14.19815 -14.05618 -13.82432 -13.53836 -13.42925 -13.28447 -13.18086 -13.07824 -12.76235 -12.72018 -12.66035 -12.52528 -12.37701 -12.28112 -12.25172 -12.13084 -11.86245 -11.80011 -11.65538 -11.36573 -11.05407 -10.85405 -10.52081 -9.53443 -9.46683 -9.42463 -9.23611 -8.16904 -6.25937 0.35777 0.46553 1.40040 1.42742 1.50321 2.42026 2.75398 2.78684 2.94428 3.16393 3.84201 3.95878 3.96904 4.02382 4.13366 4.15844 4.23988 4.30526 4.33350 4.35630 4.44208 4.45238 4.50779 4.56383 4.61270 4.76381 4.78840 4.81909 4.86926 4.87894 4.89941 4.92240 4.94171 4.97783 5.02651 5.06434 5.09905 5.22422 5.28614 5.45201 5.46136 5.49579 5.54501 5.56086 5.61813 5.73504 5.79853 5.85860 5.88701 5.96157 6.07670 6.17952 6.31495 6.49312 6.89647 7.42065 8.94936 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026462 B = 0.002345 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.858008 B =11938.940682 C =11978.456065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.091 4.091 3 C -0.125 4.125 4 C -0.119 4.119 5 C -0.161 4.161 6 C 0.076 3.924 7 N -0.504 5.504 8 C 0.075 3.925 9 C 0.056 3.944 10 N -0.535 5.535 11 C 0.074 3.926 12 C -0.075 4.075 13 H 0.057 0.943 14 C -0.111 4.111 15 C 0.034 3.966 16 C -0.527 4.527 17 H 0.061 0.939 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.960 3.040 21 H -0.268 1.268 22 H -0.285 1.285 23 H -0.267 1.267 24 C 0.058 3.942 25 C 0.072 3.928 26 C -0.077 4.077 27 C -0.103 4.103 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.116 0.884 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.031 0.969 37 H 0.082 0.918 38 H 0.019 0.981 39 H 0.069 0.931 40 H 0.036 0.964 41 H 0.063 0.937 42 H 0.038 0.962 43 H -0.016 1.016 44 H -0.010 1.010 45 H 0.262 0.738 46 H 0.035 0.965 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.043 0.957 50 H 0.065 0.935 51 H 0.078 0.922 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.633 21.614 -6.308 29.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.143 4.143 4 C -0.138 4.138 5 C -0.181 4.181 6 C -0.017 4.017 7 N -0.225 5.225 8 C -0.051 4.051 9 C -0.072 4.072 10 N -0.259 5.259 11 C -0.054 4.054 12 C -0.094 4.094 13 H 0.075 0.925 14 C -0.169 4.169 15 C -0.004 4.004 16 C -0.566 4.566 17 H 0.079 0.921 18 C -0.200 4.200 19 N -0.576 5.576 20 Si 0.785 3.215 21 H -0.193 1.193 22 H -0.211 1.211 23 H -0.192 1.192 24 C -0.071 4.071 25 C -0.054 4.054 26 C -0.078 4.078 27 C -0.160 4.160 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.160 0.840 32 H 0.155 0.845 33 H 0.134 0.866 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.100 0.900 38 H 0.037 0.963 39 H 0.088 0.912 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.003 0.997 44 H 0.009 0.991 45 H 0.070 0.930 46 H 0.053 0.947 47 H 0.106 0.894 48 H 0.104 0.896 49 H 0.062 0.938 50 H 0.084 0.916 51 H 0.097 0.903 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.545 21.422 -6.352 29.686 hybrid contribution 0.965 -0.838 0.690 1.452 sum -18.580 20.584 -5.662 28.301 Atomic orbital electron populations 1.20889 0.89404 1.03744 1.03047 1.20047 0.97399 0.92103 0.99653 1.21323 0.94148 0.98255 1.00546 1.21231 0.94741 0.97934 0.99879 1.21719 1.00131 0.93522 1.02699 1.18756 0.92947 0.88239 1.01794 1.59747 1.28176 1.31602 1.03013 1.22094 0.95044 0.96243 0.91757 1.22203 0.94472 0.96243 0.94309 1.62223 1.27246 1.33891 1.02565 1.22022 0.96129 0.88756 0.98453 1.21103 0.96921 0.95857 0.95505 0.92496 1.21469 0.97805 0.97329 1.00250 1.18994 0.93832 0.92000 0.95558 1.21583 1.32718 1.03382 0.98873 0.92122 1.25953 0.97162 0.95984 1.00923 1.70098 1.42835 1.09436 1.35210 0.85574 0.78779 0.77362 0.79786 1.19264 1.21063 1.19230 1.22186 0.95534 0.96472 0.92864 1.22133 0.94365 0.96365 0.92572 1.19870 0.92011 0.96087 0.99821 1.20669 0.99446 0.93668 1.02187 0.90504 0.90342 0.90608 0.83971 0.84524 0.86648 0.93906 0.90117 0.95116 0.89959 0.96310 0.91241 0.94453 0.91813 0.94295 0.99742 0.99117 0.92967 0.94717 0.89401 0.89557 0.93850 0.91631 0.90347 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.60 71.23 0.68 -0.54 16 2 C -0.09 -1.49 5.88 -19.89 -0.12 -1.61 16 3 C -0.12 -1.90 9.70 22.29 0.22 -1.69 16 4 C -0.12 -2.00 10.04 22.25 0.22 -1.78 16 5 C -0.16 -3.25 8.64 22.40 0.19 -3.06 16 6 C 0.08 1.65 4.70 38.22 0.18 1.83 16 7 N -0.50 -11.55 3.63 -694.78 -2.52 -14.08 16 8 C 0.08 1.83 5.35 86.31 0.46 2.29 16 9 C 0.06 1.58 5.12 86.31 0.44 2.02 16 10 N -0.53 -15.67 4.15 -895.67 -3.72 -19.39 16 11 C 0.07 2.61 4.55 86.30 0.39 3.00 16 12 C -0.08 -3.09 1.86 -10.79 -0.02 -3.11 16 13 H 0.06 2.35 6.11 -2.39 -0.01 2.34 16 14 C -0.11 -4.26 8.80 71.98 0.63 -3.63 16 15 C 0.03 1.79 4.45 29.84 0.13 1.92 16 16 C -0.53 -29.97 8.41 25.60 0.22 -29.76 16 17 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 18 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 19 N -0.94 -57.60 13.29 21.45 0.28 -57.31 16 20 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 24 C 0.06 1.43 5.62 86.31 0.48 1.92 16 25 C 0.07 1.60 5.31 86.31 0.46 2.06 16 26 C -0.08 -1.51 5.90 -19.73 -0.12 -1.63 16 27 C -0.10 -1.81 9.36 71.23 0.67 -1.14 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 0.62 8.09 -2.38 -0.02 0.60 16 30 H 0.08 0.74 5.94 -2.39 -0.01 0.73 16 31 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 32 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 33 H 0.12 2.35 7.06 -2.91 -0.02 2.33 16 34 H 0.04 1.06 7.43 -2.39 -0.02 1.05 16 35 H 0.08 1.88 8.13 -2.39 -0.02 1.86 16 36 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 2.49 5.87 -2.39 -0.01 2.47 16 38 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.06 2.13 7.62 -2.39 -0.02 2.12 16 42 H 0.04 1.58 6.95 -2.38 -0.02 1.57 16 43 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 44 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 45 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 46 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.09 1.74 8.13 -2.39 -0.02 1.72 16 49 H 0.04 0.99 7.25 -2.39 -0.02 0.97 16 50 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.08 1.06 5.95 -2.39 -0.01 1.05 16 52 H 0.06 1.29 7.46 -2.39 -0.02 1.28 16 Total: -1.00 -64.43 395.54 2.53 -61.90 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.87 Total: 14.69 kcal Atomic # 6 Polarization: -38.21 SS G_CDS: 5.59 Total: -32.61 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -5.95 Total: -90.78 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -64.43 2.53 -61.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602429600.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.748 kcal (2) G-P(sol) polarization free energy of solvation -64.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds