Wall clock time and date at job start Tue Mar 31 2020 12:17:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 C 1.38301 * 119.96431 * 2 1
4 4 C 1.38257 * 120.15378 * 179.97438 * 3 2 1
5 5 C 1.38136 * 120.07218 * 359.74751 * 4 3 2
6 6 C 1.38884 * 119.92259 * 0.52598 * 5 4 3
7 7 N 1.39669 * 120.07572 * 179.74905 * 6 5 4
8 8 C 1.46958 * 111.00063 * 63.52137 * 7 6 5
9 9 C 1.53055 * 109.36173 * 176.81234 * 8 7 6
10 10 N 1.46957 * 109.36522 * 58.40873 * 9 8 7
11 11 C 1.46901 * 110.99921 * 176.81007 * 10 9 8
12 12 C 1.53004 * 109.47068 * 307.66571 * 11 10 9
13 13 H 1.09003 * 109.46635 * 57.74154 * 12 11 10
14 14 C 1.53001 * 109.46834 * 297.74280 * 12 11 10
15 15 C 1.52996 * 109.47321 * 177.73940 * 12 11 10
16 16 C 1.50692 * 109.47401 * 185.00027 * 15 12 11
17 17 H 1.07997 * 119.99732 * 0.02562 * 16 15 12
18 18 C 1.37876 * 120.00118 * 179.97438 * 16 15 12
19 19 N 1.31518 * 120.00005 * 0.02562 * 18 16 15
20 20 Si 1.86800 * 119.99907 * 180.02562 * 18 16 15
21 21 H 1.48492 * 109.47170 * 60.00310 * 20 18 16
22 22 H 1.48506 * 109.47096 * 180.02562 * 20 18 16
23 23 H 1.48509 * 109.47096 * 299.99901 * 20 18 16
24 24 C 1.46958 * 110.87533 * 300.67328 * 10 9 8
25 25 C 1.46957 * 110.99875 * 299.72465 * 7 6 5
26 26 C 1.38081 * 119.96035 * 180.02562 * 2 1 3
27 27 C 1.50696 * 120.03965 * 359.97438 * 26 2 1
28 28 H 1.08994 * 109.47702 * 269.97965 * 1 2 3
29 29 H 1.09005 * 109.47051 * 29.97791 * 1 2 3
30 30 H 1.09002 * 109.47388 * 149.97417 * 1 2 3
31 31 H 1.08000 * 119.92702 * 0.02562 * 3 2 1
32 32 H 1.07999 * 119.96694 * 179.97438 * 4 3 2
33 33 H 1.08001 * 120.03594 * 180.27167 * 5 4 3
34 34 H 1.08995 * 109.48820 * 296.78092 * 8 7 6
35 35 H 1.08996 * 109.48456 * 56.85088 * 8 7 6
36 36 H 1.08999 * 109.49358 * 298.43241 * 9 8 7
37 37 H 1.09003 * 109.48397 * 178.37077 * 9 8 7
38 38 H 1.08998 * 109.47020 * 67.66468 * 11 10 9
39 39 H 1.09001 * 109.46962 * 187.66875 * 11 10 9
40 40 H 1.09001 * 109.46942 * 299.99647 * 14 12 11
41 41 H 1.09002 * 109.47300 * 60.00386 * 14 12 11
42 42 H 1.09011 * 109.46543 * 180.02562 * 14 12 11
43 43 H 1.09006 * 109.47049 * 305.00750 * 15 12 11
44 44 H 1.08999 * 109.46985 * 64.99705 * 15 12 11
45 45 H 0.97003 * 119.99758 * 179.97438 * 19 18 16
46 46 H 1.09004 * 109.49082 * 299.35620 * 24 10 9
47 47 H 1.09002 * 109.50772 * 179.30006 * 24 10 9
48 48 H 1.09003 * 109.49008 * 303.15335 * 25 7 6
49 49 H 1.09000 * 109.49105 * 63.20308 * 25 7 6
50 50 H 1.08999 * 109.47480 * 270.01835 * 27 26 2
51 51 H 1.09002 * 109.47464 * 30.02027 * 27 26 2
52 52 H 1.08998 * 109.47532 * 150.01980 * 27 26 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1977 1.1982 0.0000
4 6 3.5803 1.2027 0.0005
5 6 4.2764 0.0096 0.0063
6 6 3.5859 -1.1954 0.0006
7 7 4.2866 -2.4036 0.0011
8 6 5.0744 -2.5550 1.2324
9 6 5.7621 -3.9224 1.2299
10 7 6.6202 -4.0340 0.0422
11 6 7.3572 -5.3048 0.0427
12 6 8.0866 -5.4708 1.3774
13 1 7.3649 -5.4311 2.1932
14 6 9.1075 -4.3433 1.5442
15 6 8.8082 -6.8197 1.4000
16 6 9.4241 -7.0373 2.7580
17 1 9.3116 -6.2886 3.5281
18 6 10.1301 -8.1927 3.0176
19 7 10.2666 -9.1048 2.0799
20 14 10.8929 -8.4628 4.7013
21 1 9.8267 -8.4540 5.7349
22 1 11.5934 -9.7720 4.7232
23 1 11.8655 -7.3767 4.9841
24 6 5.8324 -3.8826 -1.1892
25 6 5.1446 -2.5153 -1.1867
26 6 2.1965 -1.1963 -0.0005
27 6 1.4431 -2.5014 -0.0005
28 1 -0.3634 -0.0004 1.0276
29 1 -0.3633 0.8902 -0.5135
30 1 -0.3634 -0.8898 -0.5142
31 1 1.6559 2.1324 0.0004
32 1 4.1166 2.1401 0.0001
33 1 5.3564 0.0139 0.0112
34 1 5.8279 -1.7690 1.2810
35 1 4.4151 -2.4812 2.0973
36 1 5.0078 -4.7089 1.2089
37 1 6.3701 -4.0252 2.1288
38 1 6.6584 -6.1300 -0.0945
39 1 8.0831 -5.3042 -0.7704
40 1 9.8292 -4.3830 0.7283
41 1 8.5933 -3.3823 1.5282
42 1 9.6275 -4.4619 2.4949
43 1 8.0945 -7.6171 1.1926
44 1 9.5905 -6.8260 0.6410
45 1 10.7637 -9.9175 2.2625
46 1 5.0788 -4.6687 -1.2377
47 1 6.4914 -3.9566 -2.0543
48 1 4.5366 -2.4125 -2.0855
49 1 5.8988 -1.7287 -1.1658
50 1 1.2615 -2.8161 1.0271
51 1 0.4906 -2.3711 -0.5143
52 1 2.0320 -3.2610 -0.5144
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000602429600.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:17:00
Heat of formation + Delta-G solvation = 7.844154 kcal
Electronic energy + Delta-G solvation = -26800.973869 eV
Core-core repulsion = 23377.946054 eV
Total energy + Delta-G solvation = -3423.027815 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.41665 -39.80815 -37.69161 -35.66883 -34.20511 -33.97454 -32.00979 -31.80297
-29.25310 -28.50275 -27.64602 -27.09298 -25.88879 -24.66871 -24.09372 -22.27316
-21.86929 -20.67767 -20.15129 -18.54866 -17.86922 -16.85143 -16.82522 -16.51978
-16.15725 -16.03366 -15.84989 -15.65019 -15.36168 -14.91592 -14.60878 -14.45354
-14.19815 -14.05618 -13.82432 -13.53836 -13.42925 -13.28447 -13.18086 -13.07824
-12.76235 -12.72018 -12.66035 -12.52528 -12.37701 -12.28112 -12.25172 -12.13084
-11.86245 -11.80011 -11.65538 -11.36573 -11.05407 -10.85405 -10.52081 -9.53443
-9.46683 -9.42463 -9.23611 -8.16904 -6.25937 0.35777 0.46553 1.40040
1.42742 1.50321 2.42026 2.75398 2.78684 2.94428 3.16393 3.84201
3.95878 3.96904 4.02382 4.13366 4.15844 4.23988 4.30526 4.33350
4.35630 4.44208 4.45238 4.50779 4.56383 4.61270 4.76381 4.78840
4.81909 4.86926 4.87894 4.89941 4.92240 4.94171 4.97783 5.02651
5.06434 5.09905 5.22422 5.28614 5.45201 5.46136 5.49579 5.54501
5.56086 5.61813 5.73504 5.79853 5.85860 5.88701 5.96157 6.07670
6.17952 6.31495 6.49312 6.89647 7.42065 8.94936
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.026462 B = 0.002345 C = 0.002337
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1057.858008 B =11938.940682 C =11978.456065
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.091 4.091
3 C -0.125 4.125
4 C -0.119 4.119
5 C -0.161 4.161
6 C 0.076 3.924
7 N -0.504 5.504
8 C 0.075 3.925
9 C 0.056 3.944
10 N -0.535 5.535
11 C 0.074 3.926
12 C -0.075 4.075
13 H 0.057 0.943
14 C -0.111 4.111
15 C 0.034 3.966
16 C -0.527 4.527
17 H 0.061 0.939
18 C -0.003 4.003
19 N -0.935 5.935
20 Si 0.960 3.040
21 H -0.268 1.268
22 H -0.285 1.285
23 H -0.267 1.267
24 C 0.058 3.942
25 C 0.072 3.928
26 C -0.077 4.077
27 C -0.103 4.103
28 H 0.076 0.924
29 H 0.078 0.922
30 H 0.075 0.925
31 H 0.143 0.857
32 H 0.137 0.863
33 H 0.116 0.884
34 H 0.043 0.957
35 H 0.080 0.920
36 H 0.031 0.969
37 H 0.082 0.918
38 H 0.019 0.981
39 H 0.069 0.931
40 H 0.036 0.964
41 H 0.063 0.937
42 H 0.038 0.962
43 H -0.016 1.016
44 H -0.010 1.010
45 H 0.262 0.738
46 H 0.035 0.965
47 H 0.088 0.912
48 H 0.086 0.914
49 H 0.043 0.957
50 H 0.065 0.935
51 H 0.078 0.922
52 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.633 21.614 -6.308 29.873
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.092 4.092
3 C -0.143 4.143
4 C -0.138 4.138
5 C -0.181 4.181
6 C -0.017 4.017
7 N -0.225 5.225
8 C -0.051 4.051
9 C -0.072 4.072
10 N -0.259 5.259
11 C -0.054 4.054
12 C -0.094 4.094
13 H 0.075 0.925
14 C -0.169 4.169
15 C -0.004 4.004
16 C -0.566 4.566
17 H 0.079 0.921
18 C -0.200 4.200
19 N -0.576 5.576
20 Si 0.785 3.215
21 H -0.193 1.193
22 H -0.211 1.211
23 H -0.192 1.192
24 C -0.071 4.071
25 C -0.054 4.054
26 C -0.078 4.078
27 C -0.160 4.160
28 H 0.095 0.905
29 H 0.097 0.903
30 H 0.094 0.906
31 H 0.160 0.840
32 H 0.155 0.845
33 H 0.134 0.866
34 H 0.061 0.939
35 H 0.099 0.901
36 H 0.049 0.951
37 H 0.100 0.900
38 H 0.037 0.963
39 H 0.088 0.912
40 H 0.055 0.945
41 H 0.082 0.918
42 H 0.057 0.943
43 H 0.003 0.997
44 H 0.009 0.991
45 H 0.070 0.930
46 H 0.053 0.947
47 H 0.106 0.894
48 H 0.104 0.896
49 H 0.062 0.938
50 H 0.084 0.916
51 H 0.097 0.903
52 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -19.545 21.422 -6.352 29.686
hybrid contribution 0.965 -0.838 0.690 1.452
sum -18.580 20.584 -5.662 28.301
Atomic orbital electron populations
1.20889 0.89404 1.03744 1.03047 1.20047 0.97399 0.92103 0.99653
1.21323 0.94148 0.98255 1.00546 1.21231 0.94741 0.97934 0.99879
1.21719 1.00131 0.93522 1.02699 1.18756 0.92947 0.88239 1.01794
1.59747 1.28176 1.31602 1.03013 1.22094 0.95044 0.96243 0.91757
1.22203 0.94472 0.96243 0.94309 1.62223 1.27246 1.33891 1.02565
1.22022 0.96129 0.88756 0.98453 1.21103 0.96921 0.95857 0.95505
0.92496 1.21469 0.97805 0.97329 1.00250 1.18994 0.93832 0.92000
0.95558 1.21583 1.32718 1.03382 0.98873 0.92122 1.25953 0.97162
0.95984 1.00923 1.70098 1.42835 1.09436 1.35210 0.85574 0.78779
0.77362 0.79786 1.19264 1.21063 1.19230 1.22186 0.95534 0.96472
0.92864 1.22133 0.94365 0.96365 0.92572 1.19870 0.92011 0.96087
0.99821 1.20669 0.99446 0.93668 1.02187 0.90504 0.90342 0.90608
0.83971 0.84524 0.86648 0.93906 0.90117 0.95116 0.89959 0.96310
0.91241 0.94453 0.91813 0.94295 0.99742 0.99117 0.92967 0.94717
0.89401 0.89557 0.93850 0.91631 0.90347 0.91818
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.22 9.60 71.23 0.68 -0.54 16
2 C -0.09 -1.49 5.88 -19.89 -0.12 -1.61 16
3 C -0.12 -1.90 9.70 22.29 0.22 -1.69 16
4 C -0.12 -2.00 10.04 22.25 0.22 -1.78 16
5 C -0.16 -3.25 8.64 22.40 0.19 -3.06 16
6 C 0.08 1.65 4.70 38.22 0.18 1.83 16
7 N -0.50 -11.55 3.63 -694.78 -2.52 -14.08 16
8 C 0.08 1.83 5.35 86.31 0.46 2.29 16
9 C 0.06 1.58 5.12 86.31 0.44 2.02 16
10 N -0.53 -15.67 4.15 -895.67 -3.72 -19.39 16
11 C 0.07 2.61 4.55 86.30 0.39 3.00 16
12 C -0.08 -3.09 1.86 -10.79 -0.02 -3.11 16
13 H 0.06 2.35 6.11 -2.39 -0.01 2.34 16
14 C -0.11 -4.26 8.80 71.98 0.63 -3.63 16
15 C 0.03 1.79 4.45 29.84 0.13 1.92 16
16 C -0.53 -29.97 8.41 25.60 0.22 -29.76 16
17 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16
18 C 0.00 -0.17 5.46 84.65 0.46 0.29 16
19 N -0.94 -57.60 13.29 21.45 0.28 -57.31 16
20 Si 0.96 44.77 29.54 68.60 2.03 46.80 16
21 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16
22 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16
23 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16
24 C 0.06 1.43 5.62 86.31 0.48 1.92 16
25 C 0.07 1.60 5.31 86.31 0.46 2.06 16
26 C -0.08 -1.51 5.90 -19.73 -0.12 -1.63 16
27 C -0.10 -1.81 9.36 71.23 0.67 -1.14 16
28 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16
29 H 0.08 0.62 8.09 -2.38 -0.02 0.60 16
30 H 0.08 0.74 5.94 -2.39 -0.01 0.73 16
31 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16
32 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16
33 H 0.12 2.35 7.06 -2.91 -0.02 2.33 16
34 H 0.04 1.06 7.43 -2.39 -0.02 1.05 16
35 H 0.08 1.88 8.13 -2.39 -0.02 1.86 16
36 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16
37 H 0.08 2.49 5.87 -2.39 -0.01 2.47 16
38 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16
39 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16
40 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16
41 H 0.06 2.13 7.62 -2.39 -0.02 2.12 16
42 H 0.04 1.58 6.95 -2.38 -0.02 1.57 16
43 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16
44 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16
45 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16
46 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16
47 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16
48 H 0.09 1.74 8.13 -2.39 -0.02 1.72 16
49 H 0.04 0.99 7.25 -2.39 -0.02 0.97 16
50 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16
51 H 0.08 1.06 5.95 -2.39 -0.01 1.05 16
52 H 0.06 1.29 7.46 -2.39 -0.02 1.28 16
Total: -1.00 -64.43 395.54 2.53 -61.90
By element:
Atomic # 1 Polarization: 13.83 SS G_CDS: 0.87 Total: 14.69 kcal
Atomic # 6 Polarization: -38.21 SS G_CDS: 5.59 Total: -32.61 kcal
Atomic # 7 Polarization: -84.82 SS G_CDS: -5.95 Total: -90.78 kcal
Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal
Total: -64.43 2.53 -61.90 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602429600.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.748 kcal
(2) G-P(sol) polarization free energy of solvation -64.433 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.314 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.903 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.844 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds