Wall clock time and date at job start Tue Mar 31 2020 12:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38262 * 120.00200 * 2 1 4 4 C 1.38213 * 120.00008 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99982 * 359.97438 * 4 3 2 6 6 C 1.38216 * 120.00158 * 359.75846 * 5 4 3 7 7 C 1.38207 * 119.99868 * 179.97438 * 2 1 3 8 8 C 1.50702 * 120.00083 * 0.02562 * 7 2 1 9 9 N 1.46900 * 109.47118 * 286.27903 * 8 7 2 10 10 C 1.46961 * 110.99822 * 163.89336 * 9 8 7 11 11 C 1.53052 * 109.36076 * 183.18789 * 10 9 8 12 12 N 1.46956 * 109.36358 * 301.59680 * 11 10 9 13 13 C 1.46899 * 110.99725 * 183.19390 * 12 11 10 14 14 C 1.52997 * 109.47507 * 75.99805 * 13 12 11 15 15 H 1.08998 * 109.47055 * 304.82922 * 14 13 12 16 16 C 1.53000 * 109.47238 * 64.82578 * 14 13 12 17 17 C 1.53001 * 109.47082 * 184.82593 * 14 13 12 18 18 C 1.50699 * 109.47029 * 174.99828 * 17 14 13 19 19 H 1.08009 * 120.00023 * 0.02562 * 18 17 14 20 20 C 1.37881 * 120.00077 * 180.02562 * 18 17 14 21 21 N 1.31513 * 119.99827 * 359.71994 * 20 18 17 22 22 Si 1.86804 * 119.99955 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46913 * 179.72366 * 22 20 18 24 24 H 1.48506 * 109.46668 * 299.71856 * 22 20 18 25 25 H 1.48493 * 109.47310 * 59.72122 * 22 20 18 26 26 C 1.46953 * 110.88161 * 59.32286 * 12 11 10 27 27 C 1.46955 * 110.99764 * 287.68690 * 9 8 7 28 28 H 1.08992 * 109.46997 * 273.81872 * 1 2 3 29 29 H 1.09002 * 109.46882 * 33.81535 * 1 2 3 30 30 H 1.09000 * 109.47221 * 153.80822 * 1 2 3 31 31 H 1.07998 * 119.99906 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.00032 * 180.02562 * 4 3 2 33 33 H 1.08003 * 120.00096 * 180.02562 * 5 4 3 34 34 H 1.07999 * 119.99995 * 180.27169 * 6 5 4 35 35 H 1.09004 * 109.47260 * 166.27217 * 8 7 2 36 36 H 1.09001 * 109.47110 * 46.28195 * 8 7 2 37 37 H 1.08996 * 109.49148 * 63.21682 * 10 9 8 38 38 H 1.09001 * 109.48607 * 303.15612 * 10 9 8 39 39 H 1.09006 * 109.48435 * 181.62849 * 11 10 9 40 40 H 1.08999 * 109.50523 * 61.57505 * 11 10 9 41 41 H 1.09001 * 109.47039 * 315.99468 * 13 12 11 42 42 H 1.09007 * 109.46761 * 196.00018 * 13 12 11 43 43 H 1.09000 * 109.47408 * 185.03719 * 16 14 13 44 44 H 1.09003 * 109.47086 * 305.03694 * 16 14 13 45 45 H 1.09007 * 109.47125 * 65.03233 * 16 14 13 46 46 H 1.08995 * 109.47030 * 55.00014 * 17 14 13 47 47 H 1.08998 * 109.47203 * 294.99974 * 17 14 13 48 48 H 0.96997 * 119.99830 * 0.28448 * 21 20 18 49 49 H 1.08996 * 109.48926 * 60.64857 * 26 12 11 50 50 H 1.09000 * 109.48971 * 180.71266 * 26 12 11 51 51 H 1.08996 * 109.49430 * 296.78210 * 27 9 8 52 52 H 1.09006 * 109.48657 * 56.82934 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5806 -1.1970 0.0072 7 6 2.1980 -1.1969 0.0005 8 6 1.4445 -2.5020 0.0005 9 7 0.8629 -2.7317 1.3298 10 6 -0.1765 -3.7693 1.2778 11 6 -0.8108 -3.9220 2.6623 12 7 0.2299 -4.2716 3.6391 13 6 -0.3517 -4.5014 4.9684 14 6 -1.0383 -5.8683 4.9954 15 1 -1.7689 -5.9239 4.1885 16 6 0.0087 -6.9688 4.8120 17 6 -1.7464 -6.0569 6.3385 18 6 -2.5238 -7.3478 6.3197 19 1 -2.5135 -7.9715 5.4380 20 6 -3.2482 -7.7325 7.4279 21 7 -3.2563 -6.9757 8.5034 22 14 -4.2113 -9.3330 7.4047 23 1 -4.8938 -9.5190 8.7105 24 1 -5.2238 -9.2857 6.3193 25 1 -3.2822 -10.4665 7.1660 26 6 1.2693 -3.2341 3.6911 27 6 1.9036 -3.0814 2.3066 28 1 -0.3633 0.0684 1.0253 29 1 -0.3633 0.8538 -0.5719 30 1 -0.3634 -0.9221 -0.4536 31 1 1.6584 2.1327 0.0004 32 1 4.1205 2.1326 0.0010 33 1 5.3517 -0.0001 0.0024 34 1 4.1206 -2.1323 0.0125 35 1 2.1275 -3.3160 -0.2429 36 1 0.6480 -2.4617 -0.7425 37 1 0.2701 -4.7166 0.9758 38 1 -0.9418 -3.4815 0.5569 39 1 -1.5621 -4.7112 2.6330 40 1 -1.2813 -2.9826 2.9527 41 1 -1.0834 -3.7229 5.1843 42 1 0.4378 -4.4764 5.7196 43 1 -0.4891 -7.9359 4.7416 44 1 0.5740 -6.7838 3.8985 45 1 0.6873 -6.9706 5.6651 46 1 -2.4287 -5.2243 6.5096 47 1 -1.0062 -6.0902 7.1380 48 1 -2.7560 -6.1448 8.5155 49 1 0.8228 -2.2868 3.9931 50 1 2.0346 -3.5219 4.4120 51 1 2.3739 -4.0209 2.0164 52 1 2.6551 -2.2923 2.3356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602434829.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:04 Heat of formation + Delta-G solvation = 13.104156 kcal Electronic energy + Delta-G solvation = -26662.227188 eV Core-core repulsion = 23239.427463 eV Total energy + Delta-G solvation = -3422.799725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.11975 -38.95525 -36.47385 -34.41380 -32.98877 -32.23486 -31.47963 -30.79413 -28.14529 -27.01515 -26.37343 -25.29275 -23.76381 -23.53449 -22.25802 -22.17513 -20.72503 -19.72104 -19.06568 -16.85367 -16.62461 -16.15958 -15.91957 -15.39486 -15.00909 -14.81010 -14.56534 -14.34680 -14.20886 -13.72134 -13.61700 -13.51763 -13.33499 -13.14586 -12.88932 -12.52324 -12.31447 -12.14198 -12.05406 -11.80115 -11.64020 -11.44369 -11.25455 -11.18597 -11.12370 -10.96039 -10.82005 -10.73352 -10.59122 -10.19324 -10.06922 -9.67816 -9.37278 -9.05063 -8.79670 -8.50519 -8.42477 -8.26708 -8.02796 -6.29357 -3.97101 1.11421 1.17573 3.43702 3.46659 3.48798 3.67285 3.90503 4.10652 4.50345 4.59523 4.59864 4.74237 4.81571 4.87466 4.95599 5.09029 5.10740 5.18562 5.30426 5.34671 5.42448 5.44813 5.47082 5.49110 5.51473 5.60346 5.66310 5.66787 5.76451 5.82034 5.85140 5.93724 6.01197 6.03943 6.10144 6.10963 6.24006 6.28055 6.31756 6.46380 6.47760 6.64887 6.77729 6.85891 6.90724 6.95277 7.09614 7.14242 7.33502 7.37616 7.47551 7.64592 8.30839 8.53770 8.95996 9.74208 11.11028 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031319 B = 0.002225 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.800206 B =12582.851849 C =12674.995205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.058 4.058 3 C -0.126 4.126 4 C -0.118 4.118 5 C -0.130 4.130 6 C -0.111 4.111 7 C -0.078 4.078 8 C 0.093 3.907 9 N -0.531 5.531 10 C 0.059 3.941 11 C 0.058 3.942 12 N -0.535 5.535 13 C 0.061 3.939 14 C -0.070 4.070 15 H 0.055 0.945 16 C -0.120 4.120 17 C 0.013 3.987 18 C -0.592 4.592 19 H 0.049 0.951 20 C 0.011 3.989 21 N -0.916 5.916 22 Si 1.067 2.933 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.288 1.288 26 C 0.058 3.942 27 C 0.061 3.939 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.042 0.958 36 H 0.083 0.917 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.038 0.962 41 H 0.030 0.970 42 H 0.065 0.935 43 H 0.051 0.949 44 H 0.044 0.956 45 H 0.037 0.963 46 H 0.002 0.998 47 H 0.006 0.994 48 H 0.268 0.732 49 H 0.037 0.963 50 H 0.075 0.925 51 H 0.041 0.959 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.160 15.128 -20.039 28.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.059 4.059 3 C -0.144 4.144 4 C -0.137 4.137 5 C -0.148 4.148 6 C -0.129 4.129 7 C -0.079 4.079 8 C -0.034 4.034 9 N -0.256 5.256 10 C -0.069 4.069 11 C -0.071 4.071 12 N -0.260 5.260 13 C -0.066 4.066 14 C -0.089 4.089 15 H 0.074 0.926 16 C -0.178 4.178 17 C -0.024 4.024 18 C -0.630 4.630 19 H 0.067 0.933 20 C -0.192 4.192 21 N -0.553 5.553 22 Si 0.896 3.104 23 H -0.209 1.209 24 H -0.215 1.215 25 H -0.215 1.215 26 C -0.071 4.071 27 C -0.067 4.067 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.060 0.940 36 H 0.102 0.898 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.021 0.979 47 H 0.024 0.976 48 H 0.078 0.922 49 H 0.055 0.945 50 H 0.094 0.906 51 H 0.059 0.941 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.158 14.137 -19.120 26.707 hybrid contribution 1.135 1.080 -0.837 1.776 sum 13.294 15.217 -19.957 28.400 Atomic orbital electron populations 1.20755 0.90949 1.02075 1.02722 1.19756 0.96286 0.92243 0.97610 1.21039 0.94252 0.97537 1.01547 1.21107 0.94348 0.97950 1.00251 1.21066 0.99695 0.92528 1.01487 1.21057 0.93611 0.98079 1.00202 1.19628 0.93163 0.94461 1.00634 1.20996 0.97603 0.93408 0.91409 1.62158 1.12948 1.44356 1.06157 1.22184 0.94163 0.93006 0.97521 1.22152 0.93931 0.99909 0.91058 1.62175 1.12806 1.42592 1.08415 1.22308 0.97651 0.98347 0.88334 1.21020 0.96241 0.91715 0.99905 0.92619 1.21551 0.97895 0.98734 0.99570 1.19265 0.94637 0.96976 0.91521 1.22024 1.31993 1.06718 1.02258 0.93279 1.25822 0.97126 1.03606 0.92615 1.70778 1.41355 1.13883 1.29287 0.83573 0.76113 0.74888 0.75867 1.20882 1.21540 1.21505 1.22122 0.95097 0.93653 0.96195 1.22147 0.93381 0.99330 0.91826 0.90600 0.92412 0.91409 0.86278 0.86361 0.86331 0.86413 0.93960 0.89842 0.93935 0.90579 0.89807 0.94375 0.95185 0.91624 0.92971 0.93741 0.94392 0.97945 0.97603 0.92209 0.94504 0.90616 0.94120 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.51 36.01 0.34 -0.58 16 2 C -0.06 -0.56 5.88 -104.62 -0.62 -1.17 16 3 C -0.13 -1.11 9.72 -39.58 -0.38 -1.49 16 4 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 5 C -0.13 -1.08 10.05 -39.58 -0.40 -1.48 16 6 C -0.11 -0.99 9.18 -39.58 -0.36 -1.35 16 7 C -0.08 -0.75 4.66 -104.62 -0.49 -1.24 16 8 C 0.09 0.86 4.35 -4.98 -0.02 0.84 16 9 N -0.53 -5.72 4.47 -235.90 -1.05 -6.77 16 10 C 0.06 0.67 5.58 -3.76 -0.02 0.65 16 11 C 0.06 0.80 5.43 -3.77 -0.02 0.77 16 12 N -0.54 -8.02 4.00 -234.47 -0.94 -8.96 16 13 C 0.06 1.07 4.39 -3.83 -0.02 1.05 16 14 C -0.07 -1.45 2.39 -90.62 -0.22 -1.67 16 15 H 0.06 1.19 6.75 -51.93 -0.35 0.84 16 16 C -0.12 -2.39 8.86 37.16 0.33 -2.07 16 17 C 0.01 0.35 3.76 -27.88 -0.10 0.24 16 18 C -0.59 -16.91 8.47 -34.44 -0.29 -17.20 16 19 H 0.05 1.38 7.06 -52.48 -0.37 1.01 16 20 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 21 N -0.92 -28.51 13.65 55.43 0.76 -27.75 16 22 Si 1.07 25.69 29.90 -169.99 -5.08 20.61 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.06 0.76 5.56 -3.77 -0.02 0.74 16 27 C 0.06 0.70 5.44 -3.77 -0.02 0.68 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.41 8.11 -51.93 -0.42 -0.01 16 30 H 0.07 0.56 6.13 -51.93 -0.32 0.24 16 31 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 34 H 0.12 0.91 8.00 -52.49 -0.42 0.49 16 35 H 0.04 0.38 7.85 -51.93 -0.41 -0.02 16 36 H 0.08 0.70 6.51 -51.93 -0.34 0.37 16 37 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.74 8.02 -51.93 -0.42 0.32 16 39 H 0.08 1.23 6.73 -51.93 -0.35 0.88 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.03 0.55 7.99 -51.93 -0.41 0.13 16 42 H 0.07 1.15 7.84 -51.93 -0.41 0.75 16 43 H 0.05 1.11 7.10 -51.93 -0.37 0.74 16 44 H 0.04 0.80 7.61 -51.93 -0.40 0.40 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.00 0.06 8.01 -51.93 -0.42 -0.35 16 47 H 0.01 0.16 8.00 -51.93 -0.42 -0.26 16 48 H 0.27 8.30 7.22 -40.82 -0.29 8.01 16 49 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 50 H 0.08 0.96 8.00 -51.93 -0.42 0.55 16 51 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 52 H 0.08 0.83 7.02 -51.93 -0.36 0.46 16 LS Contribution 399.08 15.07 6.01 6.01 Total: -1.00 -30.96 399.08 -12.60 -43.56 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -9.49 Total: -2.29 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -2.81 Total: -24.41 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: -1.24 Total: -43.48 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.08 Total: 20.61 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.96 -12.60 -43.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602434829.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.660 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds