Wall clock time and date at job start Tue Mar 31 2020 12:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38262 * 120.00200 * 2 1 4 4 C 1.38213 * 120.00008 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99982 * 359.97438 * 4 3 2 6 6 C 1.38216 * 120.00158 * 359.75846 * 5 4 3 7 7 C 1.38207 * 119.99868 * 179.97438 * 2 1 3 8 8 C 1.50702 * 120.00083 * 0.02562 * 7 2 1 9 9 N 1.46900 * 109.47118 * 286.27903 * 8 7 2 10 10 C 1.46961 * 110.99822 * 163.89336 * 9 8 7 11 11 C 1.53052 * 109.36076 * 183.18789 * 10 9 8 12 12 N 1.46956 * 109.36358 * 301.59680 * 11 10 9 13 13 C 1.46899 * 110.99725 * 183.19390 * 12 11 10 14 14 C 1.52997 * 109.47507 * 75.99805 * 13 12 11 15 15 H 1.08998 * 109.47055 * 304.82922 * 14 13 12 16 16 C 1.53000 * 109.47238 * 64.82578 * 14 13 12 17 17 C 1.53001 * 109.47082 * 184.82593 * 14 13 12 18 18 C 1.50699 * 109.47029 * 174.99828 * 17 14 13 19 19 H 1.08009 * 120.00023 * 0.02562 * 18 17 14 20 20 C 1.37881 * 120.00077 * 180.02562 * 18 17 14 21 21 N 1.31513 * 119.99827 * 359.71994 * 20 18 17 22 22 Si 1.86804 * 119.99955 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46913 * 179.72366 * 22 20 18 24 24 H 1.48506 * 109.46668 * 299.71856 * 22 20 18 25 25 H 1.48493 * 109.47310 * 59.72122 * 22 20 18 26 26 C 1.46953 * 110.88161 * 59.32286 * 12 11 10 27 27 C 1.46955 * 110.99764 * 287.68690 * 9 8 7 28 28 H 1.08992 * 109.46997 * 273.81872 * 1 2 3 29 29 H 1.09002 * 109.46882 * 33.81535 * 1 2 3 30 30 H 1.09000 * 109.47221 * 153.80822 * 1 2 3 31 31 H 1.07998 * 119.99906 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.00032 * 180.02562 * 4 3 2 33 33 H 1.08003 * 120.00096 * 180.02562 * 5 4 3 34 34 H 1.07999 * 119.99995 * 180.27169 * 6 5 4 35 35 H 1.09004 * 109.47260 * 166.27217 * 8 7 2 36 36 H 1.09001 * 109.47110 * 46.28195 * 8 7 2 37 37 H 1.08996 * 109.49148 * 63.21682 * 10 9 8 38 38 H 1.09001 * 109.48607 * 303.15612 * 10 9 8 39 39 H 1.09006 * 109.48435 * 181.62849 * 11 10 9 40 40 H 1.08999 * 109.50523 * 61.57505 * 11 10 9 41 41 H 1.09001 * 109.47039 * 315.99468 * 13 12 11 42 42 H 1.09007 * 109.46761 * 196.00018 * 13 12 11 43 43 H 1.09000 * 109.47408 * 185.03719 * 16 14 13 44 44 H 1.09003 * 109.47086 * 305.03694 * 16 14 13 45 45 H 1.09007 * 109.47125 * 65.03233 * 16 14 13 46 46 H 1.08995 * 109.47030 * 55.00014 * 17 14 13 47 47 H 1.08998 * 109.47203 * 294.99974 * 17 14 13 48 48 H 0.96997 * 119.99830 * 0.28448 * 21 20 18 49 49 H 1.08996 * 109.48926 * 60.64857 * 26 12 11 50 50 H 1.09000 * 109.48971 * 180.71266 * 26 12 11 51 51 H 1.08996 * 109.49430 * 296.78210 * 27 9 8 52 52 H 1.09006 * 109.48657 * 56.82934 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5806 -1.1970 0.0072 7 6 2.1980 -1.1969 0.0005 8 6 1.4445 -2.5020 0.0005 9 7 0.8629 -2.7317 1.3298 10 6 -0.1765 -3.7693 1.2778 11 6 -0.8108 -3.9220 2.6623 12 7 0.2299 -4.2716 3.6391 13 6 -0.3517 -4.5014 4.9684 14 6 -1.0383 -5.8683 4.9954 15 1 -1.7689 -5.9239 4.1885 16 6 0.0087 -6.9688 4.8120 17 6 -1.7464 -6.0569 6.3385 18 6 -2.5238 -7.3478 6.3197 19 1 -2.5135 -7.9715 5.4380 20 6 -3.2482 -7.7325 7.4279 21 7 -3.2563 -6.9757 8.5034 22 14 -4.2113 -9.3330 7.4047 23 1 -4.8938 -9.5190 8.7105 24 1 -5.2238 -9.2857 6.3193 25 1 -3.2822 -10.4665 7.1660 26 6 1.2693 -3.2341 3.6911 27 6 1.9036 -3.0814 2.3066 28 1 -0.3633 0.0684 1.0253 29 1 -0.3633 0.8538 -0.5719 30 1 -0.3634 -0.9221 -0.4536 31 1 1.6584 2.1327 0.0004 32 1 4.1205 2.1326 0.0010 33 1 5.3517 -0.0001 0.0024 34 1 4.1206 -2.1323 0.0125 35 1 2.1275 -3.3160 -0.2429 36 1 0.6480 -2.4617 -0.7425 37 1 0.2701 -4.7166 0.9758 38 1 -0.9418 -3.4815 0.5569 39 1 -1.5621 -4.7112 2.6330 40 1 -1.2813 -2.9826 2.9527 41 1 -1.0834 -3.7229 5.1843 42 1 0.4378 -4.4764 5.7196 43 1 -0.4891 -7.9359 4.7416 44 1 0.5740 -6.7838 3.8985 45 1 0.6873 -6.9706 5.6651 46 1 -2.4287 -5.2243 6.5096 47 1 -1.0062 -6.0902 7.1380 48 1 -2.7560 -6.1448 8.5155 49 1 0.8228 -2.2868 3.9931 50 1 2.0346 -3.5219 4.4120 51 1 2.3739 -4.0209 2.0164 52 1 2.6551 -2.2923 2.3356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602434829.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:03 Heat of formation + Delta-G solvation = -3.229814 kcal Electronic energy + Delta-G solvation = -26662.935482 eV Core-core repulsion = 23239.427463 eV Total energy + Delta-G solvation = -3423.508019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.90663 -39.91937 -37.82631 -35.95371 -34.20066 -33.49942 -32.41778 -31.79867 -29.26021 -28.32462 -27.71886 -26.54083 -25.16077 -24.61850 -23.84381 -22.84617 -21.44282 -20.84074 -20.64435 -18.89721 -17.41415 -17.12788 -16.66813 -16.34213 -16.04696 -16.03192 -15.74217 -15.60082 -15.39653 -15.25218 -15.02396 -14.62414 -14.38849 -13.95835 -13.70513 -13.67928 -13.57990 -13.35676 -13.16981 -12.98061 -12.86298 -12.80221 -12.64619 -12.46798 -12.27281 -12.18595 -11.96117 -11.91851 -11.83498 -11.76388 -11.57048 -11.34924 -11.26856 -10.55541 -10.51720 -9.70088 -9.46214 -9.39063 -9.21557 -8.64971 -6.33866 0.46497 0.53415 1.52300 1.61094 1.79958 2.57868 2.72463 2.88845 3.13135 3.18969 3.79752 3.87302 3.90861 3.96840 4.12011 4.14923 4.19802 4.23269 4.26568 4.36465 4.42114 4.42587 4.46938 4.48937 4.55203 4.67308 4.74370 4.77256 4.78746 4.80813 4.87049 4.88361 4.89971 4.93740 5.00453 5.02744 5.07209 5.07979 5.20304 5.31870 5.37308 5.40660 5.47439 5.59997 5.63830 5.65913 5.79229 5.93661 6.00089 6.06327 6.15235 6.17783 6.20493 6.23367 6.62694 7.47025 8.75519 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031319 B = 0.002225 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.800206 B =12582.851849 C =12674.995205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.074 4.074 3 C -0.137 4.137 4 C -0.124 4.124 5 C -0.137 4.137 6 C -0.120 4.120 7 C -0.090 4.090 8 C 0.098 3.902 9 N -0.535 5.535 10 C 0.068 3.932 11 C 0.057 3.943 12 N -0.535 5.535 13 C 0.074 3.926 14 C -0.060 4.060 15 H 0.051 0.949 16 C -0.109 4.109 17 C 0.016 3.984 18 C -0.602 4.602 19 H 0.052 0.948 20 C -0.044 4.044 21 N -0.942 5.942 22 Si 1.116 2.884 23 H -0.285 1.285 24 H -0.269 1.269 25 H -0.269 1.269 26 C 0.059 3.941 27 C 0.071 3.929 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.131 0.869 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.127 0.873 35 H 0.047 0.953 36 H 0.092 0.908 37 H 0.040 0.960 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.031 0.969 41 H 0.019 0.981 42 H 0.065 0.935 43 H 0.035 0.965 44 H 0.067 0.933 45 H 0.033 0.967 46 H -0.020 1.020 47 H -0.014 1.014 48 H 0.253 0.747 49 H 0.029 0.971 50 H 0.080 0.920 51 H 0.040 0.960 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.069 15.046 -22.038 30.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.075 4.075 3 C -0.155 4.155 4 C -0.142 4.142 5 C -0.154 4.154 6 C -0.138 4.138 7 C -0.091 4.091 8 C -0.029 4.029 9 N -0.260 5.260 10 C -0.060 4.060 11 C -0.071 4.071 12 N -0.260 5.260 13 C -0.054 4.054 14 C -0.079 4.079 15 H 0.069 0.931 16 C -0.166 4.166 17 C -0.021 4.021 18 C -0.640 4.640 19 H 0.070 0.930 20 C -0.241 4.241 21 N -0.580 5.580 22 Si 0.937 3.063 23 H -0.211 1.211 24 H -0.194 1.194 25 H -0.194 1.194 26 C -0.069 4.069 27 C -0.057 4.057 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.149 0.851 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.145 0.855 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.059 0.941 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.049 0.951 41 H 0.037 0.963 42 H 0.084 0.916 43 H 0.054 0.946 44 H 0.086 0.914 45 H 0.052 0.948 46 H -0.002 1.002 47 H 0.004 0.996 48 H 0.063 0.937 49 H 0.047 0.953 50 H 0.098 0.902 51 H 0.058 0.942 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 13.090 14.076 -21.150 28.580 hybrid contribution 0.899 1.195 -0.237 1.514 sum 13.989 15.271 -21.387 29.771 Atomic orbital electron populations 1.20709 0.90576 1.02662 1.02086 1.19956 0.96775 0.92638 0.98082 1.21286 0.94794 0.97917 1.01485 1.21406 0.94373 0.98876 0.99591 1.21353 1.00759 0.92384 1.00944 1.21254 0.93576 0.98840 1.00157 1.19717 0.93557 0.94498 1.01320 1.20988 0.97923 0.93511 0.90497 1.62140 1.12854 1.43968 1.07061 1.22101 0.94692 0.93205 0.96020 1.22174 0.93659 0.99031 0.92215 1.62134 1.13237 1.43757 1.06869 1.22010 0.97205 0.96033 0.90178 1.20833 0.96350 0.94145 0.96604 0.93078 1.21434 0.97379 0.97311 1.00496 1.19199 0.93877 0.95265 0.93768 1.22413 1.31851 1.07534 1.02241 0.92996 1.27421 0.98015 1.06447 0.92197 1.70917 1.42503 1.14066 1.30500 0.82956 0.75587 0.71394 0.76357 1.21078 1.19388 1.19417 1.22171 0.94488 0.92563 0.97710 1.22032 0.93391 0.99514 0.90811 0.91847 0.91308 0.91300 0.85104 0.84512 0.84579 0.85485 0.93510 0.88962 0.94132 0.88734 0.90952 0.95101 0.96262 0.91608 0.94563 0.91378 0.94830 1.00176 0.99592 0.93740 0.95262 0.90154 0.94190 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 9.51 71.24 0.68 -0.96 16 2 C -0.07 -1.30 5.88 -19.87 -0.12 -1.42 16 3 C -0.14 -2.20 9.72 22.27 0.22 -1.99 16 4 C -0.12 -1.82 10.05 22.27 0.22 -1.60 16 5 C -0.14 -2.00 10.05 22.27 0.22 -1.78 16 6 C -0.12 -1.92 9.18 22.27 0.20 -1.72 16 7 C -0.09 -1.58 4.66 -19.87 -0.09 -1.67 16 8 C 0.10 1.61 4.35 85.56 0.37 1.98 16 9 N -0.54 -10.60 4.47 -900.26 -4.02 -14.62 16 10 C 0.07 1.41 5.58 86.31 0.48 1.89 16 11 C 0.06 1.54 5.43 86.31 0.47 2.00 16 12 N -0.54 -15.59 4.00 -895.72 -3.58 -19.18 16 13 C 0.07 2.61 4.39 86.30 0.38 2.99 16 14 C -0.06 -2.53 2.39 -10.79 -0.03 -2.56 16 15 H 0.05 2.19 6.75 -2.39 -0.02 2.17 16 16 C -0.11 -4.27 8.86 71.98 0.64 -3.63 16 17 C 0.02 0.87 3.76 29.85 0.11 0.99 16 18 C -0.60 -34.84 8.47 25.60 0.22 -34.62 16 19 H 0.05 2.92 7.06 -2.91 -0.02 2.90 16 20 C -0.04 -2.62 5.46 84.66 0.46 -2.16 16 21 N -0.94 -59.85 13.65 21.45 0.29 -59.56 16 22 Si 1.12 51.24 29.90 68.60 2.05 53.29 16 23 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 C 0.06 1.47 5.56 86.31 0.48 1.95 16 27 C 0.07 1.49 5.44 86.31 0.47 1.96 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 0.89 8.11 -2.39 -0.02 0.87 16 30 H 0.07 1.04 6.13 -2.39 -0.01 1.02 16 31 H 0.13 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.13 1.71 8.00 -2.91 -0.02 1.69 16 35 H 0.05 0.74 7.85 -2.38 -0.02 0.72 16 36 H 0.09 1.35 6.51 -2.39 -0.02 1.34 16 37 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.09 1.63 8.02 -2.39 -0.02 1.61 16 39 H 0.07 2.09 6.73 -2.38 -0.02 2.08 16 40 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.02 0.72 7.99 -2.39 -0.02 0.70 16 42 H 0.07 2.32 7.84 -2.38 -0.02 2.30 16 43 H 0.04 1.51 7.10 -2.39 -0.02 1.49 16 44 H 0.07 2.34 7.61 -2.39 -0.02 2.32 16 45 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 46 H -0.02 -1.14 8.01 -2.39 -0.02 -1.16 16 47 H -0.01 -0.81 8.00 -2.39 -0.02 -0.83 16 48 H 0.25 16.34 7.22 -92.71 -0.67 15.67 16 49 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.08 1.93 8.00 -2.39 -0.02 1.92 16 51 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 52 H 0.08 1.65 7.02 -2.38 -0.02 1.63 16 Total: -1.00 -66.72 399.08 1.08 -65.64 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.95 Total: 14.77 kcal Atomic # 6 Polarization: -45.72 SS G_CDS: 5.39 Total: -40.33 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -7.31 Total: -93.36 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 2.05 Total: 53.29 kcal Total: -66.72 1.08 -65.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602434829.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.407 kcal (2) G-P(sol) polarization free energy of solvation -66.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds