Wall clock time and date at job start Tue Mar 31 2020 12:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38255 * 119.99957 * 2 1 4 4 C 1.38215 * 120.00161 * 180.02562 * 3 2 1 5 5 C 1.38251 * 119.99672 * 359.97438 * 4 3 2 6 6 C 1.38212 * 120.00207 * 359.96294 * 5 4 3 7 7 C 1.50705 * 119.99964 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.46935 * 90.00021 * 7 6 5 9 9 C 1.46961 * 110.99735 * 189.99739 * 8 7 6 10 10 C 1.53059 * 109.36302 * 183.18721 * 9 8 7 11 11 N 1.46952 * 109.36370 * 301.60193 * 10 9 8 12 12 C 1.46906 * 110.99889 * 183.18679 * 11 10 9 13 13 C 1.53000 * 109.47072 * 170.00107 * 12 11 10 14 14 H 1.08998 * 109.47666 * 54.99810 * 13 12 11 15 15 C 1.53005 * 109.46913 * 294.99925 * 13 12 11 16 16 C 1.52998 * 109.46937 * 175.00313 * 13 12 11 17 17 C 1.50707 * 109.47006 * 184.99877 * 16 13 12 18 18 H 1.07996 * 119.99871 * 0.02562 * 17 16 13 19 19 C 1.37879 * 119.99966 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00032 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99940 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47111 * 89.99462 * 21 19 17 23 23 H 1.48502 * 109.46843 * 209.99879 * 21 19 17 24 24 H 1.48500 * 109.46659 * 329.99487 * 21 19 17 25 25 C 1.46961 * 110.88410 * 59.32054 * 11 10 9 26 26 C 1.46955 * 111.00246 * 313.79893 * 8 7 6 27 27 C 1.38211 * 119.99873 * 180.21075 * 2 1 3 28 28 H 1.08996 * 109.47405 * 90.00343 * 1 2 3 29 29 H 1.09007 * 109.46888 * 209.99976 * 1 2 3 30 30 H 1.08996 * 109.47257 * 329.99389 * 1 2 3 31 31 H 1.08004 * 119.99802 * 0.02562 * 3 2 1 32 32 H 1.07993 * 120.00176 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.00252 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.47068 * 330.00035 * 7 6 5 35 35 H 1.09001 * 109.46989 * 209.99887 * 7 6 5 36 36 H 1.09003 * 109.48904 * 63.22353 * 9 8 7 37 37 H 1.08997 * 109.51213 * 303.16639 * 9 8 7 38 38 H 1.08999 * 109.48651 * 181.63251 * 10 9 8 39 39 H 1.08996 * 109.48556 * 61.57139 * 10 9 8 40 40 H 1.08993 * 109.47164 * 289.99960 * 12 11 10 41 41 H 1.08996 * 109.46920 * 49.99994 * 12 11 10 42 42 H 1.08995 * 109.47281 * 60.00455 * 15 13 12 43 43 H 1.09000 * 109.46871 * 179.97438 * 15 13 12 44 44 H 1.08999 * 109.47528 * 300.00033 * 15 13 12 45 45 H 1.09002 * 109.46907 * 304.99730 * 16 13 12 46 46 H 1.09002 * 109.47546 * 64.99887 * 16 13 12 47 47 H 0.97002 * 119.99939 * 180.02562 * 20 19 17 48 48 H 1.09003 * 109.48904 * 60.64354 * 25 11 10 49 49 H 1.09002 * 109.49205 * 180.70887 * 25 11 10 50 50 H 1.09008 * 109.48713 * 296.78155 * 26 8 7 51 51 H 1.09002 * 109.48661 * 56.82117 * 26 8 7 52 52 H 1.08003 * 120.00235 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 3.5806 -1.1969 0.0008 7 6 4.3342 -2.5020 0.0002 8 7 4.5808 -2.9256 1.3850 9 6 5.5119 -4.0617 1.4302 10 6 5.6802 -4.5224 2.8801 11 7 6.1790 -3.4038 3.6920 12 6 6.4256 -3.8273 5.0769 13 6 7.1714 -2.7197 5.8238 14 1 6.6102 -1.7884 5.7476 15 6 8.5580 -2.5316 5.2050 16 6 7.3186 -3.1075 7.2965 17 6 7.9428 -1.9657 8.0567 18 1 8.2076 -1.0545 7.5410 19 6 8.1748 -2.0841 9.4106 20 7 8.7200 -1.0879 10.0739 21 14 7.7161 -3.6600 10.3027 22 1 8.8674 -4.5974 10.2753 23 1 7.3655 -3.3472 11.7114 24 1 6.5504 -4.2879 9.6302 25 6 5.2479 -2.2676 3.6468 26 6 5.0796 -1.8069 2.1970 27 6 2.1980 -1.1969 -0.0044 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.6582 2.1326 0.0004 32 1 4.1204 2.1326 -0.0010 33 1 5.3517 0.0000 -0.0014 34 1 5.2859 -2.3718 -0.5149 35 1 3.7444 -3.2619 -0.5126 36 1 6.4790 -3.7554 1.0314 37 1 5.1150 -4.8817 0.8318 38 1 6.3927 -5.3464 2.9194 39 1 4.7181 -4.8544 3.2701 40 1 5.4745 -4.0226 5.5720 41 1 7.0285 -4.7354 5.0771 42 1 8.4533 -2.2553 4.1559 43 1 9.0892 -1.7422 5.7368 44 1 9.1194 -3.4628 5.2812 45 1 6.3361 -3.3280 7.7141 46 1 7.9543 -3.9891 7.3784 47 1 8.8836 -1.1713 11.0264 48 1 4.2808 -2.5739 4.0456 49 1 5.6452 -1.4477 4.2451 50 1 6.0418 -1.4750 1.8068 51 1 4.3672 -0.9828 2.1573 52 1 1.6580 -2.1323 -0.0083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602436564.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:13 Heat of formation + Delta-G solvation = 20.607278 kcal Electronic energy + Delta-G solvation = -26587.097864 eV Core-core repulsion = 23164.623499 eV Total energy + Delta-G solvation = -3422.474365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.14740 -38.93904 -36.55333 -34.37371 -32.94064 -32.12931 -31.39225 -30.83952 -28.29481 -27.25005 -27.07270 -25.37714 -23.75752 -23.66103 -22.21873 -21.77224 -20.61771 -19.68018 -18.84121 -16.81524 -16.67633 -16.28191 -15.79131 -15.46893 -14.95965 -14.65518 -14.57602 -14.44447 -14.29302 -13.98439 -13.77856 -13.56893 -13.28471 -13.03895 -12.87590 -12.59657 -12.37169 -12.20946 -12.10988 -11.93648 -11.71513 -11.49486 -11.27054 -11.18780 -11.16810 -10.94876 -10.90590 -10.67258 -10.62674 -10.39312 -9.71101 -9.64819 -9.35050 -9.04330 -9.01654 -8.83520 -8.48805 -8.40431 -8.02660 -5.99238 -3.95814 1.09765 1.19693 3.33432 3.40731 3.43235 3.44637 3.96577 4.12250 4.43218 4.49409 4.56598 4.69269 4.87792 4.91165 5.05153 5.07710 5.11401 5.18618 5.28460 5.31435 5.32919 5.34642 5.44578 5.45869 5.50081 5.55639 5.58734 5.69309 5.74976 5.83952 5.86161 5.90935 5.94000 6.05440 6.11212 6.11786 6.26119 6.31990 6.35223 6.41515 6.46304 6.63924 6.78272 6.84340 6.91173 6.92957 7.07123 7.17799 7.31170 7.33582 7.41369 7.53886 7.86179 8.60738 9.06719 9.63907 11.14250 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.002578 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.778643 B =10858.610953 C =11510.615704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.121 4.121 4 C -0.116 4.116 5 C -0.118 4.118 6 C -0.078 4.078 7 C 0.094 3.906 8 N -0.534 5.534 9 C 0.059 3.941 10 C 0.057 3.943 11 N -0.535 5.535 12 C 0.059 3.941 13 C -0.072 4.072 14 H 0.061 0.939 15 C -0.123 4.123 16 C -0.010 4.010 17 C -0.511 4.511 18 H 0.073 0.927 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.878 3.122 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.266 1.266 25 C 0.055 3.945 26 C 0.057 3.943 27 C -0.100 4.100 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.042 0.958 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.038 0.962 40 H 0.028 0.972 41 H 0.068 0.932 42 H 0.043 0.957 43 H 0.058 0.942 44 H 0.038 0.962 45 H 0.012 0.988 46 H 0.011 0.989 47 H 0.262 0.738 48 H 0.037 0.963 49 H 0.087 0.913 50 H 0.040 0.960 51 H 0.082 0.918 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.578 -1.437 -24.750 28.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.089 4.089 3 C -0.140 4.140 4 C -0.134 4.134 5 C -0.136 4.136 6 C -0.078 4.078 7 C -0.033 4.033 8 N -0.259 5.259 9 C -0.069 4.069 10 C -0.072 4.072 11 N -0.260 5.260 12 C -0.068 4.068 13 C -0.091 4.091 14 H 0.080 0.920 15 C -0.180 4.180 16 C -0.047 4.047 17 C -0.549 4.549 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.545 5.545 21 Si 0.706 3.294 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.191 1.191 25 C -0.073 4.073 26 C -0.071 4.071 27 C -0.119 4.119 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.057 0.943 45 H 0.030 0.970 46 H 0.029 0.971 47 H 0.071 0.929 48 H 0.056 0.944 49 H 0.105 0.895 50 H 0.059 0.941 51 H 0.100 0.900 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.513 -1.409 -24.570 28.076 hybrid contribution -0.125 -0.777 0.707 1.058 sum -13.638 -2.186 -23.863 27.572 Atomic orbital electron populations 1.20788 0.91255 1.02885 1.02160 1.19924 0.96071 0.93171 0.99752 1.21038 0.94293 0.97488 1.01155 1.21111 0.94303 0.97973 1.00033 1.21086 0.99819 0.92106 1.00601 1.19732 0.93891 0.94415 0.99805 1.21058 0.98291 0.93823 0.90116 1.62315 1.46271 1.07803 1.09502 1.22160 0.94303 0.93397 0.97011 1.22111 0.98692 0.93779 0.92583 1.62188 1.44949 1.06802 1.12055 1.22322 0.98772 0.99321 0.86401 1.21027 0.95926 0.96509 0.95611 0.92023 1.21580 0.96436 1.01134 0.98885 1.19623 0.96302 0.97203 0.91621 1.21130 1.39623 1.01017 0.93101 0.90853 1.25030 0.94813 0.96148 0.97625 1.69916 1.44349 1.31590 1.08671 0.86808 0.79427 0.84350 0.78862 1.20389 1.21525 1.19122 1.22203 0.94510 0.94900 0.95702 1.22285 0.98558 0.93160 0.93081 1.20883 0.93362 0.97542 1.00076 0.91314 0.91479 0.91566 0.86249 0.86013 0.86289 0.93937 0.90033 0.93949 0.90660 0.90495 0.94413 0.95348 0.91356 0.93835 0.92307 0.94309 0.96988 0.97108 0.92868 0.94443 0.89478 0.94135 0.90010 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.01 36.01 0.36 -0.40 16 2 C -0.09 -0.80 5.88 -104.63 -0.62 -1.41 16 3 C -0.12 -1.07 9.70 -39.58 -0.38 -1.46 16 4 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 5 C -0.12 -1.13 7.84 -39.59 -0.31 -1.44 16 6 C -0.08 -0.77 4.14 -104.62 -0.43 -1.20 16 7 C 0.09 0.89 5.44 -4.98 -0.03 0.86 16 8 N -0.53 -6.01 4.85 -235.90 -1.14 -7.15 16 9 C 0.06 0.64 5.58 -3.76 -0.02 0.62 16 10 C 0.06 0.71 5.61 -3.77 -0.02 0.68 16 11 N -0.54 -7.90 4.16 -234.46 -0.98 -8.88 16 12 C 0.06 0.99 4.35 -3.82 -0.02 0.98 16 13 C -0.07 -1.44 2.26 -90.62 -0.21 -1.64 16 14 H 0.06 1.28 6.28 -51.93 -0.33 0.95 16 15 C -0.12 -2.39 8.89 37.16 0.33 -2.06 16 16 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 17 C -0.51 -14.56 8.96 -34.44 -0.31 -14.87 16 18 H 0.07 2.24 7.30 -52.49 -0.38 1.86 16 19 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 20 N -0.91 -28.21 13.96 55.43 0.77 -27.43 16 21 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 25 C 0.06 0.79 5.42 -3.77 -0.02 0.77 16 26 C 0.06 0.71 4.64 -3.77 -0.02 0.69 16 27 C -0.10 -0.95 9.36 -39.58 -0.37 -1.32 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 30 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 32 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.04 0.39 8.02 -51.93 -0.42 -0.03 16 35 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 39 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 41 H 0.07 1.12 8.03 -51.93 -0.42 0.70 16 42 H 0.04 0.77 7.75 -51.93 -0.40 0.36 16 43 H 0.06 1.27 6.95 -51.93 -0.36 0.90 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 46 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 47 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 48 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.09 1.36 6.25 -51.93 -0.32 1.03 16 50 H 0.04 0.52 8.14 -51.92 -0.42 0.10 16 51 H 0.08 1.02 5.85 -51.93 -0.30 0.72 16 52 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 397.49 15.07 5.99 5.99 Total: -1.00 -30.91 397.49 -12.30 -43.21 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -9.62 Total: -1.93 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -2.65 Total: -21.19 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: -1.35 Total: -43.46 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.91 -12.30 -43.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602436564.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.818 kcal (2) G-P(sol) polarization free energy of solvation -30.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds