Wall clock time and date at job start Tue Mar 31 2020 12:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38255 * 119.99957 * 2 1 4 4 C 1.38215 * 120.00161 * 180.02562 * 3 2 1 5 5 C 1.38251 * 119.99672 * 359.97438 * 4 3 2 6 6 C 1.38212 * 120.00207 * 359.96294 * 5 4 3 7 7 C 1.50705 * 119.99964 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.46935 * 90.00021 * 7 6 5 9 9 C 1.46961 * 110.99735 * 189.99739 * 8 7 6 10 10 C 1.53059 * 109.36302 * 183.18721 * 9 8 7 11 11 N 1.46952 * 109.36370 * 301.60193 * 10 9 8 12 12 C 1.46906 * 110.99889 * 183.18679 * 11 10 9 13 13 C 1.53000 * 109.47072 * 170.00107 * 12 11 10 14 14 H 1.08998 * 109.47666 * 54.99810 * 13 12 11 15 15 C 1.53005 * 109.46913 * 294.99925 * 13 12 11 16 16 C 1.52998 * 109.46937 * 175.00313 * 13 12 11 17 17 C 1.50707 * 109.47006 * 184.99877 * 16 13 12 18 18 H 1.07996 * 119.99871 * 0.02562 * 17 16 13 19 19 C 1.37879 * 119.99966 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00032 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99940 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47111 * 89.99462 * 21 19 17 23 23 H 1.48502 * 109.46843 * 209.99879 * 21 19 17 24 24 H 1.48500 * 109.46659 * 329.99487 * 21 19 17 25 25 C 1.46961 * 110.88410 * 59.32054 * 11 10 9 26 26 C 1.46955 * 111.00246 * 313.79893 * 8 7 6 27 27 C 1.38211 * 119.99873 * 180.21075 * 2 1 3 28 28 H 1.08996 * 109.47405 * 90.00343 * 1 2 3 29 29 H 1.09007 * 109.46888 * 209.99976 * 1 2 3 30 30 H 1.08996 * 109.47257 * 329.99389 * 1 2 3 31 31 H 1.08004 * 119.99802 * 0.02562 * 3 2 1 32 32 H 1.07993 * 120.00176 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.00252 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.47068 * 330.00035 * 7 6 5 35 35 H 1.09001 * 109.46989 * 209.99887 * 7 6 5 36 36 H 1.09003 * 109.48904 * 63.22353 * 9 8 7 37 37 H 1.08997 * 109.51213 * 303.16639 * 9 8 7 38 38 H 1.08999 * 109.48651 * 181.63251 * 10 9 8 39 39 H 1.08996 * 109.48556 * 61.57139 * 10 9 8 40 40 H 1.08993 * 109.47164 * 289.99960 * 12 11 10 41 41 H 1.08996 * 109.46920 * 49.99994 * 12 11 10 42 42 H 1.08995 * 109.47281 * 60.00455 * 15 13 12 43 43 H 1.09000 * 109.46871 * 179.97438 * 15 13 12 44 44 H 1.08999 * 109.47528 * 300.00033 * 15 13 12 45 45 H 1.09002 * 109.46907 * 304.99730 * 16 13 12 46 46 H 1.09002 * 109.47546 * 64.99887 * 16 13 12 47 47 H 0.97002 * 119.99939 * 180.02562 * 20 19 17 48 48 H 1.09003 * 109.48904 * 60.64354 * 25 11 10 49 49 H 1.09002 * 109.49205 * 180.70887 * 25 11 10 50 50 H 1.09008 * 109.48713 * 296.78155 * 26 8 7 51 51 H 1.09002 * 109.48661 * 56.82117 * 26 8 7 52 52 H 1.08003 * 120.00235 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 3.5806 -1.1969 0.0008 7 6 4.3342 -2.5020 0.0002 8 7 4.5808 -2.9256 1.3850 9 6 5.5119 -4.0617 1.4302 10 6 5.6802 -4.5224 2.8801 11 7 6.1790 -3.4038 3.6920 12 6 6.4256 -3.8273 5.0769 13 6 7.1714 -2.7197 5.8238 14 1 6.6102 -1.7884 5.7476 15 6 8.5580 -2.5316 5.2050 16 6 7.3186 -3.1075 7.2965 17 6 7.9428 -1.9657 8.0567 18 1 8.2076 -1.0545 7.5410 19 6 8.1748 -2.0841 9.4106 20 7 8.7200 -1.0879 10.0739 21 14 7.7161 -3.6600 10.3027 22 1 8.8674 -4.5974 10.2753 23 1 7.3655 -3.3472 11.7114 24 1 6.5504 -4.2879 9.6302 25 6 5.2479 -2.2676 3.6468 26 6 5.0796 -1.8069 2.1970 27 6 2.1980 -1.1969 -0.0044 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.6582 2.1326 0.0004 32 1 4.1204 2.1326 -0.0010 33 1 5.3517 0.0000 -0.0014 34 1 5.2859 -2.3718 -0.5149 35 1 3.7444 -3.2619 -0.5126 36 1 6.4790 -3.7554 1.0314 37 1 5.1150 -4.8817 0.8318 38 1 6.3927 -5.3464 2.9194 39 1 4.7181 -4.8544 3.2701 40 1 5.4745 -4.0226 5.5720 41 1 7.0285 -4.7354 5.0771 42 1 8.4533 -2.2553 4.1559 43 1 9.0892 -1.7422 5.7368 44 1 9.1194 -3.4628 5.2812 45 1 6.3361 -3.3280 7.7141 46 1 7.9543 -3.9891 7.3784 47 1 8.8836 -1.1713 11.0264 48 1 4.2808 -2.5739 4.0456 49 1 5.6452 -1.4477 4.2451 50 1 6.0418 -1.4750 1.8068 51 1 4.3672 -0.9828 2.1573 52 1 1.6580 -2.1323 -0.0083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602436564.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:12 Heat of formation + Delta-G solvation = 3.149579 kcal Electronic energy + Delta-G solvation = -26587.854887 eV Core-core repulsion = 23164.623499 eV Total energy + Delta-G solvation = -3423.231387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.95842 -39.88777 -37.80765 -35.79679 -34.24410 -33.49106 -32.32188 -31.83942 -29.78828 -28.65090 -27.76344 -26.60484 -25.06030 -24.65531 -23.54084 -22.79897 -21.32271 -20.77845 -20.41235 -18.92763 -17.45981 -17.29876 -16.57236 -16.34011 -16.24580 -16.02493 -15.79423 -15.59001 -15.34247 -15.14270 -14.90751 -14.70554 -14.45397 -14.15635 -13.91557 -13.72930 -13.48161 -13.28962 -13.22742 -13.01939 -12.80097 -12.77102 -12.65864 -12.44004 -12.28232 -12.18077 -12.03750 -11.96130 -11.82931 -11.69085 -11.60018 -11.33469 -11.14819 -10.94778 -10.73423 -9.74916 -9.53618 -9.31068 -9.15497 -8.25975 -6.28201 0.40460 0.50707 1.35546 1.37325 1.49124 2.37674 2.70091 2.95418 3.09169 3.15556 3.72042 3.89696 3.94414 3.96451 4.06882 4.17452 4.23235 4.26870 4.31768 4.40477 4.43216 4.48258 4.49786 4.53426 4.58323 4.64141 4.72419 4.83260 4.84440 4.85159 4.86472 4.87471 4.91475 4.94921 5.00068 5.05850 5.09632 5.11474 5.19697 5.31695 5.39275 5.41449 5.54079 5.57789 5.66431 5.69190 5.72921 5.73132 5.97084 6.00415 6.13228 6.19547 6.23695 6.35756 6.79188 7.35195 8.90868 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.002578 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.778643 B =10858.610953 C =11510.615704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C -0.131 4.131 4 C -0.126 4.126 5 C -0.130 4.130 6 C -0.088 4.088 7 C 0.098 3.902 8 N -0.540 5.540 9 C 0.063 3.937 10 C 0.056 3.944 11 N -0.539 5.539 12 C 0.071 3.929 13 C -0.067 4.067 14 H 0.047 0.953 15 C -0.112 4.112 16 C -0.006 4.006 17 C -0.517 4.517 18 H 0.033 0.967 19 C 0.001 3.999 20 N -0.954 5.954 21 Si 0.948 3.052 22 H -0.266 1.266 23 H -0.286 1.286 24 H -0.248 1.248 25 C 0.057 3.943 26 C 0.070 3.930 27 C -0.111 4.111 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.120 0.880 34 H 0.046 0.954 35 H 0.096 0.904 36 H 0.040 0.960 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.034 0.966 40 H 0.025 0.975 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.026 0.974 44 H 0.046 0.954 45 H 0.013 0.987 46 H 0.019 0.981 47 H 0.264 0.736 48 H 0.029 0.971 49 H 0.068 0.932 50 H 0.035 0.965 51 H 0.078 0.922 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.894 -3.655 -26.220 30.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.098 4.098 3 C -0.149 4.149 4 C -0.144 4.144 5 C -0.149 4.149 6 C -0.088 4.088 7 C -0.029 4.029 8 N -0.265 5.265 9 C -0.065 4.065 10 C -0.072 4.072 11 N -0.264 5.264 12 C -0.057 4.057 13 C -0.086 4.086 14 H 0.065 0.935 15 C -0.170 4.170 16 C -0.044 4.044 17 C -0.555 4.555 18 H 0.052 0.948 19 C -0.195 4.195 20 N -0.595 5.595 21 Si 0.772 3.228 22 H -0.192 1.192 23 H -0.212 1.212 24 H -0.172 1.172 25 C -0.071 4.071 26 C -0.058 4.058 27 C -0.130 4.130 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.138 0.862 34 H 0.064 0.936 35 H 0.114 0.886 36 H 0.058 0.942 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.053 0.947 40 H 0.043 0.957 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.045 0.955 44 H 0.065 0.935 45 H 0.031 0.969 46 H 0.037 0.963 47 H 0.073 0.927 48 H 0.047 0.953 49 H 0.086 0.914 50 H 0.053 0.947 51 H 0.097 0.903 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.837 -3.633 -26.074 30.219 hybrid contribution 0.285 0.029 1.104 1.140 sum -14.552 -3.604 -24.970 29.125 Atomic orbital electron populations 1.20819 0.89746 1.03342 1.03023 1.20246 0.97351 0.93067 0.99140 1.21314 0.94396 0.98306 1.00879 1.21357 0.94762 0.98429 0.99839 1.21204 1.00027 0.92489 1.01142 1.19844 0.94206 0.94614 1.00178 1.21080 0.98651 0.94090 0.89031 1.62315 1.46231 1.07450 1.10494 1.22181 0.94308 0.93863 0.96132 1.22216 0.98783 0.93188 0.92981 1.62153 1.45486 1.07768 1.10954 1.22075 0.98239 0.98060 0.87302 1.20891 0.96612 0.97232 0.93888 0.93507 1.21455 0.95776 1.00359 0.99361 1.19566 0.95712 0.95539 0.93577 1.21432 1.39384 1.01128 0.93575 0.94838 1.26003 0.94818 1.00028 0.98670 1.70075 1.46091 1.34201 1.09178 0.85688 0.79993 0.79718 0.77425 1.19151 1.21193 1.17177 1.22141 0.93786 0.94338 0.96843 1.22073 0.98214 0.93542 0.91971 1.21068 0.93426 0.98176 1.00311 0.90179 0.91226 0.90917 0.84668 0.84793 0.86197 0.93565 0.88588 0.94201 0.88209 0.89114 0.94722 0.95653 0.90135 0.92074 0.95513 0.93468 0.96888 0.96311 0.92686 0.95306 0.91380 0.94696 0.90334 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.01 71.24 0.71 -0.61 16 2 C -0.10 -1.64 5.88 -19.87 -0.12 -1.76 16 3 C -0.13 -2.18 9.70 22.27 0.22 -1.96 16 4 C -0.13 -2.21 10.05 22.27 0.22 -1.98 16 5 C -0.13 -2.43 7.84 22.27 0.17 -2.26 16 6 C -0.09 -1.63 4.14 -19.86 -0.08 -1.72 16 7 C 0.10 1.67 5.44 85.56 0.47 2.13 16 8 N -0.54 -11.14 4.85 -900.25 -4.37 -15.50 16 9 C 0.06 1.18 5.58 86.31 0.48 1.66 16 10 C 0.06 1.25 5.61 86.31 0.48 1.73 16 11 N -0.54 -15.08 4.16 -895.71 -3.73 -18.81 16 12 C 0.07 2.27 4.35 86.30 0.38 2.65 16 13 C -0.07 -2.68 2.26 -10.79 -0.02 -2.71 16 14 H 0.05 1.99 6.28 -2.39 -0.02 1.98 16 15 C -0.11 -4.34 8.89 71.98 0.64 -3.70 16 16 C -0.01 -0.29 3.52 29.85 0.10 -0.18 16 17 C -0.52 -30.24 8.96 25.60 0.23 -30.01 16 18 H 0.03 2.16 7.30 -2.91 -0.02 2.14 16 19 C 0.00 0.05 5.47 84.66 0.46 0.51 16 20 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 21 Si 0.95 45.16 27.47 68.60 1.88 47.05 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 24 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 25 C 0.06 1.63 5.42 86.31 0.47 2.10 16 26 C 0.07 1.69 4.64 86.31 0.40 2.09 16 27 C -0.11 -1.98 9.36 22.27 0.21 -1.77 16 28 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.78 8.09 -2.38 -0.02 0.76 16 30 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 31 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 32 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.12 2.13 8.06 -2.91 -0.02 2.10 16 34 H 0.05 0.76 8.02 -2.39 -0.02 0.74 16 35 H 0.10 1.36 8.08 -2.39 -0.02 1.34 16 36 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.09 1.78 8.07 -2.39 -0.02 1.76 16 39 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.03 0.83 8.12 -2.39 -0.02 0.81 16 41 H 0.08 2.40 8.03 -2.39 -0.02 2.38 16 42 H 0.06 2.12 7.75 -2.39 -0.02 2.10 16 43 H 0.03 1.17 6.95 -2.39 -0.02 1.15 16 44 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 46 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 47 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 48 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.07 2.17 6.25 -2.39 -0.01 2.16 16 50 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 51 H 0.08 1.95 5.85 -2.39 -0.01 1.93 16 52 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -67.37 397.49 0.30 -67.07 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.79 Total: 16.71 kcal Atomic # 6 Polarization: -41.22 SS G_CDS: 5.42 Total: -35.80 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -7.80 Total: -95.03 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.05 kcal Total: -67.37 0.30 -67.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602436564.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.219 kcal (2) G-P(sol) polarization free energy of solvation -67.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds