Wall clock time and date at job start Tue Mar 31 2020 12:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38237 * 119.99944 * 2 1 4 4 C 1.38240 * 119.99606 * 179.81263 * 3 2 1 5 5 C 1.38228 * 120.00109 * 0.39610 * 4 3 2 6 6 C 1.50700 * 120.00212 * 179.84004 * 5 4 3 7 7 N 1.46906 * 109.46875 * 270.02367 * 6 5 4 8 8 C 1.48529 * 111.00081 * 52.59550 * 7 6 5 9 9 C 1.54937 * 103.22385 * 159.72435 * 8 7 6 10 10 C 1.54597 * 102.92288 * 322.58662 * 9 8 7 11 11 H 1.08997 * 110.39219 * 262.99764 * 10 9 8 12 12 N 1.46905 * 110.30806 * 140.87520 * 10 9 8 13 13 C 1.46898 * 110.99703 * 89.28510 * 12 10 9 14 14 C 1.53000 * 109.46540 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.47540 * 55.00067 * 14 13 12 16 16 C 1.52998 * 109.47515 * 294.99973 * 14 13 12 17 17 C 1.53010 * 109.47068 * 175.00027 * 14 13 12 18 18 C 1.50701 * 109.46930 * 184.99972 * 17 14 13 19 19 H 1.08000 * 120.00006 * 0.02562 * 18 17 14 20 20 C 1.37875 * 119.99482 * 179.97438 * 18 17 14 21 21 N 1.31517 * 119.99884 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 120.00430 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47026 * 89.99787 * 22 20 18 24 24 H 1.48494 * 109.47283 * 210.00016 * 22 20 18 25 25 H 1.48502 * 109.46894 * 330.00120 * 22 20 18 26 26 C 1.47894 * 111.00080 * 169.99772 * 7 6 5 27 27 C 1.38236 * 120.00193 * 359.85663 * 5 4 3 28 28 C 1.38232 * 119.99843 * 359.95505 * 27 5 4 29 29 H 1.09002 * 109.47152 * 269.72611 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.72711 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.72692 * 1 2 3 32 32 H 1.07998 * 120.00100 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.99623 * 180.22936 * 4 3 2 34 34 H 1.09000 * 109.46850 * 30.01623 * 6 5 4 35 35 H 1.08994 * 109.47595 * 150.02025 * 6 5 4 36 36 H 1.09002 * 110.67068 * 278.15873 * 8 7 6 37 37 H 1.08999 * 110.66619 * 41.29182 * 8 7 6 38 38 H 1.09006 * 110.72519 * 204.23280 * 9 8 7 39 39 H 1.09002 * 110.87948 * 81.01797 * 9 8 7 40 40 H 1.00894 * 110.99513 * 213.23886 * 12 10 9 41 41 H 1.09000 * 109.47024 * 299.99387 * 13 12 10 42 42 H 1.08994 * 109.47412 * 60.00349 * 13 12 10 43 43 H 1.08993 * 109.47521 * 180.02562 * 16 14 13 44 44 H 1.09009 * 109.46618 * 300.00432 * 16 14 13 45 45 H 1.08997 * 109.47007 * 59.99730 * 16 14 13 46 46 H 1.08995 * 109.46751 * 305.00000 * 17 14 13 47 47 H 1.08994 * 109.46900 * 65.00056 * 17 14 13 48 48 H 0.96993 * 120.00343 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.91871 * 333.50360 * 26 7 6 50 50 H 1.09000 * 109.91875 * 94.60570 * 26 7 6 51 51 H 1.07997 * 120.00219 * 179.97438 * 27 5 4 52 52 H 1.08003 * 120.00189 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1971 0.0039 5 6 4.2717 0.0000 -0.0004 6 6 5.7787 -0.0001 0.0002 7 7 6.2689 0.0058 -1.3847 8 6 5.6526 1.1107 -2.1628 9 6 6.6280 1.2933 -3.3526 10 6 8.0120 1.0625 -2.7037 11 1 8.4747 2.0154 -2.4468 12 7 8.8812 0.3033 -3.6127 13 6 9.6323 1.2039 -4.4973 14 6 10.5245 0.3785 -5.4266 15 1 9.9158 -0.3495 -5.9629 16 6 11.5838 -0.3530 -4.5997 17 6 11.2122 1.3064 -6.4303 18 6 11.9937 0.4832 -7.4217 19 1 11.9990 -0.5940 -7.3439 20 6 12.7009 1.1053 -8.4285 21 7 13.3834 0.3871 -9.2934 22 14 12.6900 2.9684 -8.5642 23 1 13.8115 3.5293 -7.7687 24 1 12.8472 3.3620 -9.9874 25 1 11.4024 3.4950 -8.0443 26 6 7.7276 0.2457 -1.4296 27 6 3.5805 -1.1972 -0.0057 28 6 2.1982 -1.1971 -0.0057 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3633 -0.8875 -0.5181 31 1 -0.3633 0.8925 -0.5096 32 1 1.6582 2.1325 -0.0004 33 1 4.1206 2.1324 0.0077 34 1 6.1418 0.8877 0.5179 35 1 6.1418 -0.8922 0.5103 36 1 4.6621 0.8256 -2.5175 37 1 5.6010 2.0204 -1.5645 38 1 6.5561 2.3022 -3.7591 39 1 6.4373 0.5519 -4.1286 40 1 9.5043 -0.3000 -3.0972 41 1 8.9350 1.7938 -5.0921 42 1 10.2517 1.8699 -3.8968 43 1 12.2197 -0.9406 -5.2618 44 1 12.1926 0.3751 -4.0635 45 1 11.0940 -1.0140 -3.8847 46 1 10.4597 1.8925 -6.9578 47 1 11.8892 1.9765 -5.9007 48 1 13.8812 0.8247 -10.0015 49 1 8.0384 0.8095 -0.5500 50 1 8.2593 -0.7050 -1.4681 51 1 4.1205 -2.1325 -0.0096 52 1 1.6582 -2.1324 -0.0103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602740591.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:13 Heat of formation + Delta-G solvation = 13.900715 kcal Electronic energy + Delta-G solvation = -25688.293906 eV Core-core repulsion = 22265.528723 eV Total energy + Delta-G solvation = -3422.765183 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.15976 -38.91929 -36.69209 -34.54329 -33.10598 -31.93911 -31.23982 -30.57229 -28.75234 -27.73410 -26.93109 -24.96166 -24.47748 -23.04435 -22.02341 -21.48826 -20.76890 -20.34352 -18.95575 -16.86789 -16.58403 -16.15270 -15.87548 -15.70032 -15.49934 -15.14015 -14.38355 -14.20555 -14.08222 -13.87045 -13.83002 -13.63322 -13.27387 -13.13630 -12.84225 -12.57046 -12.32034 -12.22285 -12.17479 -12.01687 -11.73749 -11.62609 -11.40920 -11.30867 -11.17171 -11.10152 -11.01176 -10.86623 -10.66883 -10.37875 -9.78465 -9.70885 -9.41134 -9.18697 -9.03568 -8.91270 -8.54183 -8.49603 -8.18006 -5.99766 -3.96518 1.00533 1.13630 3.32431 3.36798 3.40060 3.43849 3.94051 4.28424 4.35883 4.48439 4.48645 4.53354 4.62755 4.72262 4.80020 4.82875 5.07809 5.10048 5.16364 5.21995 5.25078 5.31582 5.33715 5.39949 5.43721 5.47003 5.51885 5.63742 5.70462 5.73784 5.78966 5.80199 5.82687 5.89154 5.98341 6.11003 6.16314 6.24196 6.30231 6.34533 6.41122 6.48797 6.66379 6.72666 6.79903 6.82001 6.99097 7.09008 7.29824 7.35550 7.51462 7.63376 7.85261 8.59953 9.06163 9.63177 11.13685 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028641 B = 0.001927 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.386346 B =14528.698864 C =14826.262552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.089 4.089 3 C -0.122 4.122 4 C -0.109 4.109 5 C -0.085 4.085 6 C 0.084 3.916 7 N -0.503 5.503 8 C 0.039 3.961 9 C -0.114 4.114 10 C 0.077 3.923 11 H 0.047 0.953 12 N -0.677 5.677 13 C 0.062 3.938 14 C -0.076 4.076 15 H 0.072 0.928 16 C -0.135 4.135 17 C -0.008 4.008 18 C -0.512 4.512 19 H 0.074 0.926 20 C 0.064 3.936 21 N -0.905 5.905 22 Si 0.878 3.122 23 H -0.279 1.279 24 H -0.289 1.289 25 H -0.266 1.266 26 C 0.036 3.964 27 C -0.093 4.093 28 C -0.122 4.122 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.042 0.958 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.040 0.960 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.340 0.660 41 H 0.066 0.934 42 H 0.022 0.978 43 H 0.068 0.932 44 H 0.039 0.961 45 H 0.034 0.966 46 H 0.015 0.985 47 H 0.008 0.992 48 H 0.262 0.738 49 H 0.043 0.957 50 H 0.087 0.913 51 H 0.124 0.876 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.188 1.107 23.568 33.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.089 4.089 3 C -0.140 4.140 4 C -0.128 4.128 5 C -0.086 4.086 6 C -0.044 4.044 7 N -0.227 5.227 8 C -0.089 4.089 9 C -0.153 4.153 10 C -0.034 4.034 11 H 0.065 0.935 12 N -0.310 5.310 13 C -0.066 4.066 14 C -0.095 4.095 15 H 0.090 0.910 16 C -0.193 4.193 17 C -0.046 4.046 18 C -0.550 4.550 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.544 5.544 22 Si 0.706 3.294 23 H -0.205 1.205 24 H -0.215 1.215 25 H -0.191 1.191 26 C -0.092 4.092 27 C -0.112 4.112 28 C -0.140 4.140 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.160 0.840 41 H 0.084 0.916 42 H 0.040 0.960 43 H 0.087 0.913 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.033 0.967 47 H 0.027 0.973 48 H 0.071 0.929 49 H 0.062 0.938 50 H 0.105 0.895 51 H 0.142 0.858 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -23.679 0.494 22.746 32.838 hybrid contribution 1.037 2.218 0.805 2.577 sum -22.642 2.712 23.551 32.782 Atomic orbital electron populations 1.20797 0.91313 1.02817 1.02218 1.19936 0.96037 0.93268 0.99634 1.20981 0.94045 0.97515 1.01469 1.21049 0.94225 0.97422 1.00063 1.19712 0.94902 0.93326 1.00613 1.21257 0.91040 1.01595 0.90466 1.64884 1.04018 1.43387 1.10450 1.23246 0.99028 0.92047 0.94566 1.22592 0.92914 1.01978 0.97802 1.22355 0.94832 0.95000 0.91243 0.93530 1.60679 1.25653 1.21882 1.22737 1.22206 0.95269 0.94370 0.94798 1.21032 0.95183 0.97878 0.95369 0.90961 1.21747 0.98818 0.99610 0.99108 1.19601 0.95406 0.95300 0.94316 1.21142 1.28318 0.95082 1.10474 0.90801 1.25033 0.95108 0.97941 0.95549 1.69914 1.32269 1.35436 1.16827 0.86805 0.78859 0.86699 0.77054 1.20482 1.21481 1.19097 1.23100 0.89342 1.00245 0.96541 1.21027 0.93923 0.97729 0.98526 1.21042 0.94212 0.97508 1.01219 0.91275 0.91521 0.91586 0.86232 0.86453 0.93973 0.89789 0.90035 0.94146 0.91592 0.89227 0.83998 0.91562 0.95981 0.91333 0.94165 0.94670 0.96711 0.97323 0.92858 0.93828 0.89523 0.85821 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.01 36.01 0.36 -0.27 16 2 C -0.09 -0.69 5.88 -104.62 -0.62 -1.31 16 3 C -0.12 -0.97 9.70 -39.58 -0.38 -1.35 16 4 C -0.11 -0.92 8.34 -39.58 -0.33 -1.25 16 5 C -0.09 -0.76 4.59 -104.63 -0.48 -1.24 16 6 C 0.08 0.74 5.19 -4.97 -0.03 0.71 16 7 N -0.50 -5.28 5.39 -231.90 -1.25 -6.53 16 8 C 0.04 0.40 4.97 -1.90 -0.01 0.39 16 9 C -0.11 -1.34 6.76 -24.87 -0.17 -1.51 16 10 C 0.08 0.92 3.33 -66.35 -0.22 0.70 16 11 H 0.05 0.56 7.82 -51.93 -0.41 0.16 16 12 N -0.68 -9.55 6.29 -105.29 -0.66 -10.21 16 13 C 0.06 1.02 5.00 -3.82 -0.02 1.00 16 14 C -0.08 -1.50 2.55 -90.62 -0.23 -1.73 16 15 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 16 C -0.14 -2.48 8.77 37.16 0.33 -2.16 16 17 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 18 C -0.51 -14.57 8.96 -34.44 -0.31 -14.87 16 19 H 0.07 2.25 7.30 -52.49 -0.38 1.87 16 20 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 21 N -0.91 -28.12 13.96 55.43 0.77 -27.35 16 22 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 26 C 0.04 0.37 6.39 -2.76 -0.02 0.36 16 27 C -0.09 -0.82 9.70 -39.58 -0.38 -1.20 16 28 C -0.12 -0.99 9.70 -39.58 -0.38 -1.37 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 31 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 32 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.12 0.87 7.38 -52.49 -0.39 0.48 16 34 H 0.04 0.35 7.76 -51.93 -0.40 -0.05 16 35 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 36 H 0.08 0.88 7.73 -51.93 -0.40 0.48 16 37 H 0.04 0.38 7.09 -51.93 -0.37 0.01 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 1.22 8.06 -51.93 -0.42 0.80 16 40 H 0.34 4.54 6.27 -39.30 -0.25 4.29 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.02 0.35 8.07 -51.93 -0.42 -0.06 16 43 H 0.07 1.42 6.95 -51.93 -0.36 1.06 16 44 H 0.04 0.71 8.14 -51.92 -0.42 0.28 16 45 H 0.03 0.54 6.68 -51.93 -0.35 0.19 16 46 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 47 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 48 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 49 H 0.04 0.41 7.57 -51.93 -0.39 0.01 16 50 H 0.09 0.92 7.48 -51.93 -0.39 0.54 16 51 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 52 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 LS Contribution 401.05 15.07 6.04 6.04 Total: -1.00 -30.83 401.05 -12.35 -43.17 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -9.50 Total: 1.18 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -3.09 Total: -23.61 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: -1.14 Total: -44.09 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.83 -12.35 -43.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602740591.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.075 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds