Wall clock time and date at job start Tue Mar 31 2020 12:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38237 * 119.99944 * 2 1 4 4 C 1.38240 * 119.99606 * 179.81263 * 3 2 1 5 5 C 1.38228 * 120.00109 * 0.39610 * 4 3 2 6 6 C 1.50700 * 120.00212 * 179.84004 * 5 4 3 7 7 N 1.46906 * 109.46875 * 270.02367 * 6 5 4 8 8 C 1.48529 * 111.00081 * 52.59550 * 7 6 5 9 9 C 1.54937 * 103.22385 * 159.72435 * 8 7 6 10 10 C 1.54597 * 102.92288 * 322.58662 * 9 8 7 11 11 H 1.08997 * 110.39219 * 262.99764 * 10 9 8 12 12 N 1.46905 * 110.30806 * 140.87520 * 10 9 8 13 13 C 1.46898 * 110.99703 * 89.28510 * 12 10 9 14 14 C 1.53000 * 109.46540 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.47540 * 55.00067 * 14 13 12 16 16 C 1.52998 * 109.47515 * 294.99973 * 14 13 12 17 17 C 1.53010 * 109.47068 * 175.00027 * 14 13 12 18 18 C 1.50701 * 109.46930 * 184.99972 * 17 14 13 19 19 H 1.08000 * 120.00006 * 0.02562 * 18 17 14 20 20 C 1.37875 * 119.99482 * 179.97438 * 18 17 14 21 21 N 1.31517 * 119.99884 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 120.00430 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47026 * 89.99787 * 22 20 18 24 24 H 1.48494 * 109.47283 * 210.00016 * 22 20 18 25 25 H 1.48502 * 109.46894 * 330.00120 * 22 20 18 26 26 C 1.47894 * 111.00080 * 169.99772 * 7 6 5 27 27 C 1.38236 * 120.00193 * 359.85663 * 5 4 3 28 28 C 1.38232 * 119.99843 * 359.95505 * 27 5 4 29 29 H 1.09002 * 109.47152 * 269.72611 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.72711 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.72692 * 1 2 3 32 32 H 1.07998 * 120.00100 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.99623 * 180.22936 * 4 3 2 34 34 H 1.09000 * 109.46850 * 30.01623 * 6 5 4 35 35 H 1.08994 * 109.47595 * 150.02025 * 6 5 4 36 36 H 1.09002 * 110.67068 * 278.15873 * 8 7 6 37 37 H 1.08999 * 110.66619 * 41.29182 * 8 7 6 38 38 H 1.09006 * 110.72519 * 204.23280 * 9 8 7 39 39 H 1.09002 * 110.87948 * 81.01797 * 9 8 7 40 40 H 1.00894 * 110.99513 * 213.23886 * 12 10 9 41 41 H 1.09000 * 109.47024 * 299.99387 * 13 12 10 42 42 H 1.08994 * 109.47412 * 60.00349 * 13 12 10 43 43 H 1.08993 * 109.47521 * 180.02562 * 16 14 13 44 44 H 1.09009 * 109.46618 * 300.00432 * 16 14 13 45 45 H 1.08997 * 109.47007 * 59.99730 * 16 14 13 46 46 H 1.08995 * 109.46751 * 305.00000 * 17 14 13 47 47 H 1.08994 * 109.46900 * 65.00056 * 17 14 13 48 48 H 0.96993 * 120.00343 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.91871 * 333.50360 * 26 7 6 50 50 H 1.09000 * 109.91875 * 94.60570 * 26 7 6 51 51 H 1.07997 * 120.00219 * 179.97438 * 27 5 4 52 52 H 1.08003 * 120.00189 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1971 0.0039 5 6 4.2717 0.0000 -0.0004 6 6 5.7787 -0.0001 0.0002 7 7 6.2689 0.0058 -1.3847 8 6 5.6526 1.1107 -2.1628 9 6 6.6280 1.2933 -3.3526 10 6 8.0120 1.0625 -2.7037 11 1 8.4747 2.0154 -2.4468 12 7 8.8812 0.3033 -3.6127 13 6 9.6323 1.2039 -4.4973 14 6 10.5245 0.3785 -5.4266 15 1 9.9158 -0.3495 -5.9629 16 6 11.5838 -0.3530 -4.5997 17 6 11.2122 1.3064 -6.4303 18 6 11.9937 0.4832 -7.4217 19 1 11.9990 -0.5940 -7.3439 20 6 12.7009 1.1053 -8.4285 21 7 13.3834 0.3871 -9.2934 22 14 12.6900 2.9684 -8.5642 23 1 13.8115 3.5293 -7.7687 24 1 12.8472 3.3620 -9.9874 25 1 11.4024 3.4950 -8.0443 26 6 7.7276 0.2457 -1.4296 27 6 3.5805 -1.1972 -0.0057 28 6 2.1982 -1.1971 -0.0057 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3633 -0.8875 -0.5181 31 1 -0.3633 0.8925 -0.5096 32 1 1.6582 2.1325 -0.0004 33 1 4.1206 2.1324 0.0077 34 1 6.1418 0.8877 0.5179 35 1 6.1418 -0.8922 0.5103 36 1 4.6621 0.8256 -2.5175 37 1 5.6010 2.0204 -1.5645 38 1 6.5561 2.3022 -3.7591 39 1 6.4373 0.5519 -4.1286 40 1 9.5043 -0.3000 -3.0972 41 1 8.9350 1.7938 -5.0921 42 1 10.2517 1.8699 -3.8968 43 1 12.2197 -0.9406 -5.2618 44 1 12.1926 0.3751 -4.0635 45 1 11.0940 -1.0140 -3.8847 46 1 10.4597 1.8925 -6.9578 47 1 11.8892 1.9765 -5.9007 48 1 13.8812 0.8247 -10.0015 49 1 8.0384 0.8095 -0.5500 50 1 8.2593 -0.7050 -1.4681 51 1 4.1205 -2.1325 -0.0096 52 1 1.6582 -2.1324 -0.0103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602740591.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:12 Heat of formation + Delta-G solvation = -4.246158 kcal Electronic energy + Delta-G solvation = -25689.080813 eV Core-core repulsion = 22265.528723 eV Total energy + Delta-G solvation = -3423.552091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.84835 -39.71341 -38.02874 -35.71707 -34.48884 -33.45133 -31.83133 -31.48826 -29.81716 -29.11845 -27.99598 -26.36866 -25.17107 -23.83920 -23.60467 -22.24307 -21.48948 -21.24782 -20.57009 -18.94424 -17.38620 -17.00917 -16.68350 -16.56719 -16.42029 -16.20008 -15.87306 -15.44396 -14.96780 -14.91121 -14.81416 -14.54036 -14.25036 -14.24154 -14.01001 -13.70426 -13.46327 -13.32901 -13.13450 -12.92737 -12.85324 -12.72332 -12.58097 -12.44564 -12.28364 -12.16944 -12.05986 -11.88464 -11.75347 -11.70721 -11.68681 -11.43389 -11.14605 -11.01879 -10.73415 -9.78926 -9.57491 -9.31314 -9.20302 -8.25619 -6.27954 0.40472 0.53453 1.35251 1.37667 1.49388 2.37846 2.73692 3.09397 3.18063 3.25796 3.56690 3.78477 3.91957 3.94981 4.11862 4.15314 4.17441 4.21864 4.25509 4.30155 4.37589 4.42335 4.52941 4.58711 4.63154 4.69585 4.71612 4.75123 4.79064 4.84257 4.88773 4.90843 4.95345 4.99511 5.01413 5.03682 5.07274 5.21476 5.29445 5.30377 5.31469 5.38989 5.51672 5.56571 5.70804 5.71835 5.73506 5.73944 5.89621 6.05442 6.15602 6.20907 6.35947 6.54369 6.79674 7.35421 8.91149 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028641 B = 0.001927 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.386346 B =14528.698864 C =14826.262552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.097 4.097 3 C -0.131 4.131 4 C -0.116 4.116 5 C -0.097 4.097 6 C 0.087 3.913 7 N -0.517 5.517 8 C 0.049 3.951 9 C -0.114 4.114 10 C 0.077 3.923 11 H 0.054 0.946 12 N -0.683 5.683 13 C 0.077 3.923 14 C -0.072 4.072 15 H 0.050 0.950 16 C -0.128 4.128 17 C -0.006 4.006 18 C -0.519 4.519 19 H 0.034 0.966 20 C 0.000 4.000 21 N -0.954 5.954 22 Si 0.949 3.051 23 H -0.267 1.267 24 H -0.286 1.286 25 H -0.248 1.248 26 C 0.041 3.959 27 C -0.107 4.107 28 C -0.133 4.133 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.135 0.865 33 H 0.126 0.874 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.345 0.655 41 H 0.062 0.938 42 H 0.033 0.967 43 H 0.033 0.967 44 H 0.050 0.950 45 H 0.065 0.935 46 H 0.015 0.985 47 H 0.017 0.983 48 H 0.264 0.736 49 H 0.060 0.940 50 H 0.084 0.916 51 H 0.126 0.874 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.569 3.109 25.660 35.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.134 4.134 5 C -0.098 4.098 6 C -0.040 4.040 7 N -0.242 5.242 8 C -0.079 4.079 9 C -0.153 4.153 10 C -0.033 4.033 11 H 0.072 0.928 12 N -0.316 5.316 13 C -0.052 4.052 14 C -0.091 4.091 15 H 0.069 0.931 16 C -0.186 4.186 17 C -0.044 4.044 18 C -0.557 4.557 19 H 0.052 0.948 20 C -0.196 4.196 21 N -0.595 5.595 22 Si 0.772 3.228 23 H -0.192 1.192 24 H -0.212 1.212 25 H -0.171 1.171 26 C -0.087 4.087 27 C -0.126 4.126 28 C -0.150 4.150 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.153 0.847 33 H 0.144 0.856 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.166 0.834 41 H 0.080 0.920 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.033 0.967 47 H 0.035 0.965 48 H 0.073 0.927 49 H 0.078 0.922 50 H 0.102 0.898 51 H 0.144 0.856 52 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -25.078 2.487 24.866 35.403 hybrid contribution 1.421 1.468 0.160 2.049 sum -23.657 3.955 25.026 34.664 Atomic orbital electron populations 1.20833 0.89774 1.03440 1.02973 1.20263 0.97337 0.93151 0.98958 1.21251 0.94137 0.98322 1.01202 1.21211 0.94622 0.97605 0.99980 1.19801 0.95047 0.93637 1.01294 1.21252 0.91005 1.02162 0.89558 1.64856 1.04092 1.43657 1.11585 1.23121 0.98119 0.92548 0.94077 1.22556 0.93407 1.01567 0.97798 1.22399 0.94228 0.95270 0.91443 0.92831 1.60600 1.25609 1.21937 1.23503 1.21905 0.94763 0.93932 0.94578 1.20894 0.95621 0.97202 0.95377 0.93142 1.21654 0.98225 0.99832 0.98865 1.19553 0.95110 0.95444 0.94247 1.21463 1.28663 0.93929 1.11650 0.94787 1.26018 0.94739 1.03702 0.95156 1.70075 1.33668 1.37875 1.17879 0.85678 0.79951 0.79803 0.77323 1.19224 1.21200 1.17115 1.23039 0.89364 1.00082 0.96249 1.21190 0.94463 0.97968 0.98976 1.21280 0.94200 0.98385 1.01186 0.90373 0.91004 0.90892 0.84705 0.85574 0.93125 0.89410 0.90872 0.92847 0.91014 0.91498 0.83417 0.91954 0.94880 0.94759 0.93124 0.91586 0.96696 0.96458 0.92703 0.92200 0.89800 0.85603 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.01 71.24 0.71 -0.34 16 2 C -0.10 -1.38 5.88 -19.86 -0.12 -1.50 16 3 C -0.13 -1.88 9.70 22.27 0.22 -1.66 16 4 C -0.12 -1.77 8.34 22.27 0.19 -1.58 16 5 C -0.10 -1.63 4.59 -19.87 -0.09 -1.72 16 6 C 0.09 1.39 5.19 85.56 0.44 1.83 16 7 N -0.52 -9.97 5.39 -887.60 -4.78 -14.75 16 8 C 0.05 0.93 4.97 86.65 0.43 1.36 16 9 C -0.11 -2.52 6.76 31.80 0.21 -2.30 16 10 C 0.08 1.67 3.33 45.79 0.15 1.82 16 11 H 0.05 1.12 7.82 -2.39 -0.02 1.10 16 12 N -0.68 -18.04 6.29 -487.04 -3.06 -21.10 16 13 C 0.08 2.39 5.00 86.30 0.43 2.82 16 14 C -0.07 -2.81 2.55 -10.79 -0.03 -2.84 16 15 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 16 C -0.13 -4.63 8.77 71.98 0.63 -4.00 16 17 C -0.01 -0.27 3.52 29.85 0.10 -0.16 16 18 C -0.52 -30.25 8.96 25.60 0.23 -30.02 16 19 H 0.03 2.19 7.30 -2.91 -0.02 2.17 16 20 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 21 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 22 Si 0.95 44.99 27.47 68.60 1.88 46.87 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 25 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 26 C 0.04 0.75 6.39 86.45 0.55 1.31 16 27 C -0.11 -1.80 9.70 22.27 0.22 -1.59 16 28 C -0.13 -2.02 9.70 22.27 0.22 -1.80 16 29 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 31 H 0.07 0.57 8.08 -2.38 -0.02 0.55 16 32 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 33 H 0.13 1.62 7.38 -2.91 -0.02 1.60 16 34 H 0.05 0.71 7.76 -2.39 -0.02 0.70 16 35 H 0.09 1.30 8.08 -2.39 -0.02 1.28 16 36 H 0.07 1.51 7.73 -2.39 -0.02 1.49 16 37 H 0.05 0.87 7.09 -2.39 -0.02 0.86 16 38 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.07 1.78 8.06 -2.39 -0.02 1.76 16 40 H 0.35 8.45 6.27 -89.70 -0.56 7.89 16 41 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.03 0.96 8.07 -2.39 -0.02 0.94 16 43 H 0.03 1.44 6.95 -2.39 -0.02 1.43 16 44 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 45 H 0.07 1.94 6.68 -2.39 -0.02 1.92 16 46 H 0.01 0.70 7.20 -2.39 -0.02 0.68 16 47 H 0.02 0.78 7.57 -2.39 -0.02 0.77 16 48 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 49 H 0.06 0.93 7.57 -2.39 -0.02 0.91 16 50 H 0.08 1.61 7.48 -2.39 -0.02 1.59 16 51 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 52 H 0.13 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -67.50 401.05 -0.45 -67.94 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.25 Total: 21.51 kcal Atomic # 6 Polarization: -44.88 SS G_CDS: 4.97 Total: -39.92 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -7.55 Total: -96.42 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.87 kcal Total: -67.50 -0.45 -67.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602740591.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.698 kcal (2) G-P(sol) polarization free energy of solvation -67.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds