Wall clock time and date at job start Tue Mar 31 2020 12:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38236 * 119.99810 * 2 1 4 4 C 1.38240 * 120.00058 * 179.97438 * 3 2 1 5 5 C 1.38232 * 119.99631 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99860 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.47107 * 89.99965 * 6 5 4 8 8 C 1.47449 * 110.99925 * 69.87541 * 7 6 5 9 9 C 1.54311 * 107.23220 * 123.25698 * 8 7 6 10 10 C 1.55140 * 103.02352 * 22.28584 * 9 8 7 11 11 H 1.08997 * 110.99089 * 82.43557 * 10 9 8 12 12 N 1.46902 * 110.99206 * 206.25719 * 10 9 8 13 13 C 1.46898 * 110.99584 * 273.54036 * 12 10 9 14 14 C 1.53001 * 109.46800 * 179.97438 * 13 12 10 15 15 H 1.09001 * 109.47263 * 55.00637 * 14 13 12 16 16 C 1.53001 * 109.47360 * 295.00167 * 14 13 12 17 17 C 1.53003 * 109.47174 * 175.00006 * 14 13 12 18 18 C 1.50697 * 109.47409 * 185.00014 * 17 14 13 19 19 H 1.08005 * 119.99787 * 0.02562 * 18 17 14 20 20 C 1.37872 * 120.00231 * 179.97438 * 18 17 14 21 21 N 1.31521 * 119.99943 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00178 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47230 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46994 * 120.00492 * 22 20 18 25 25 H 1.48506 * 109.47058 * 240.00006 * 22 20 18 26 26 C 1.47840 * 111.00178 * 190.71556 * 7 6 5 27 27 C 1.38234 * 120.00312 * 0.27932 * 5 4 3 28 28 C 1.38233 * 120.00030 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47334 * 89.99648 * 1 2 3 30 30 H 1.09001 * 109.47189 * 209.99748 * 1 2 3 31 31 H 1.09002 * 109.46991 * 329.99451 * 1 2 3 32 32 H 1.08002 * 120.00221 * 0.02562 * 3 2 1 33 33 H 1.07996 * 119.99763 * 180.02562 * 4 3 2 34 34 H 1.09002 * 109.47152 * 330.00052 * 6 5 4 35 35 H 1.09001 * 109.46980 * 210.00152 * 6 5 4 36 36 H 1.08997 * 109.88742 * 242.66510 * 8 7 6 37 37 H 1.09004 * 109.88813 * 3.68788 * 8 7 6 38 38 H 1.09003 * 110.70864 * 140.66988 * 9 8 7 39 39 H 1.09001 * 110.70797 * 263.89665 * 9 8 7 40 40 H 1.00896 * 110.99878 * 37.49826 * 12 10 9 41 41 H 1.08996 * 109.47639 * 300.00264 * 13 12 10 42 42 H 1.09002 * 109.47171 * 60.00186 * 13 12 10 43 43 H 1.09003 * 109.46808 * 179.97438 * 16 14 13 44 44 H 1.09000 * 109.47195 * 299.99899 * 16 14 13 45 45 H 1.08997 * 109.46976 * 60.00497 * 16 14 13 46 46 H 1.09004 * 109.47152 * 305.00459 * 17 14 13 47 47 H 1.09005 * 109.46820 * 64.99960 * 17 14 13 48 48 H 0.96998 * 120.00254 * 179.97438 * 21 20 18 49 49 H 1.09005 * 110.37490 * 332.47029 * 26 7 6 50 50 H 1.09002 * 110.37399 * 94.80649 * 26 7 6 51 51 H 1.07998 * 120.00015 * 179.72855 * 27 5 4 52 52 H 1.07996 * 119.99910 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0001 0.0028 7 7 6.2673 0.0007 1.3881 8 6 5.9964 -1.2915 2.0446 9 6 7.3487 -1.8441 2.5417 10 6 8.2304 -0.5716 2.6426 11 1 8.0518 -0.0461 3.5807 12 7 9.6533 -0.9040 2.4907 13 6 10.2458 -1.2833 3.7802 14 6 11.7246 -1.6222 3.5820 15 1 12.2285 -0.7832 3.1023 16 6 11.8490 -2.8649 2.6981 17 6 12.3717 -1.8962 4.9411 18 6 13.8524 -2.1091 4.7587 19 1 14.2883 -2.0541 3.7721 20 6 14.6506 -2.3731 5.8514 21 7 14.1198 -2.4396 7.0529 22 14 16.4861 -2.6363 5.6254 23 1 16.8309 -2.5098 4.1866 24 1 17.2321 -1.6155 6.4044 25 1 16.8546 -3.9923 6.1059 26 6 7.7224 0.2574 1.4367 27 6 3.5805 -1.1971 -0.0037 28 6 2.1982 -1.1971 -0.0005 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6581 2.1325 0.0004 33 1 4.1204 2.1326 0.0010 34 1 6.1424 0.8899 -0.5112 35 1 6.1424 -0.8901 -0.5104 36 1 5.3228 -1.1445 2.8888 37 1 5.5500 -1.9837 1.3306 38 1 7.2372 -2.3141 3.5188 39 1 7.7666 -2.5465 1.8205 40 1 9.7832 -1.6324 1.8047 41 1 10.1536 -0.4534 4.4807 42 1 9.7240 -2.1539 4.1778 43 1 12.9026 -3.1060 2.5565 44 1 11.3452 -3.7040 3.1779 45 1 11.3881 -2.6697 1.7298 46 1 12.2056 -1.0446 5.6009 47 1 11.9277 -2.7890 5.3815 48 1 14.6813 -2.6257 7.8216 49 1 8.1983 -0.0808 0.5162 50 1 7.9155 1.3181 1.5970 51 1 4.1206 -2.1323 -0.0073 52 1 1.6582 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602740595.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:19 Heat of formation + Delta-G solvation = 7.007599 kcal Electronic energy + Delta-G solvation = -25537.533882 eV Core-core repulsion = 22114.469791 eV Total energy + Delta-G solvation = -3423.064091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.09566 -38.95929 -36.61454 -34.48001 -33.14011 -31.91331 -31.21538 -30.35881 -28.72966 -27.46587 -26.68533 -25.05502 -24.32892 -23.00824 -22.34310 -21.37188 -20.85479 -20.48481 -18.94508 -16.65693 -16.44950 -16.16594 -16.05319 -15.51851 -15.43875 -14.83579 -14.54428 -14.09540 -13.88273 -13.81707 -13.60915 -13.52385 -13.50052 -13.01215 -12.77818 -12.62318 -12.41219 -12.34497 -12.09194 -12.05499 -11.68610 -11.51249 -11.46879 -11.24000 -11.16441 -11.04246 -10.88830 -10.78778 -10.69695 -10.32032 -10.18439 -9.72619 -9.16437 -9.15670 -8.95723 -8.82118 -8.47390 -8.32761 -8.13082 -5.97226 -3.98370 1.04604 1.16431 3.32379 3.38429 3.40035 3.44060 3.91516 4.29308 4.46765 4.50909 4.51158 4.57540 4.67739 4.74005 4.81497 4.91089 4.99650 5.17119 5.19934 5.22627 5.23826 5.30163 5.38652 5.41383 5.45386 5.48080 5.54318 5.69194 5.76766 5.80791 5.81398 5.83132 5.83792 6.00394 6.04558 6.07699 6.14885 6.27252 6.32496 6.37090 6.45257 6.55147 6.73591 6.76877 6.87211 6.95420 7.09985 7.17138 7.36397 7.62573 7.70760 7.86326 8.03083 8.46891 9.08231 9.65123 11.14294 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.045048 B = 0.001741 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.406904 B =16075.864237 C =16165.517462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.090 4.090 3 C -0.122 4.122 4 C -0.094 4.094 5 C -0.079 4.079 6 C 0.089 3.911 7 N -0.524 5.524 8 C 0.046 3.954 9 C -0.175 4.175 10 C 0.082 3.918 11 H 0.092 0.908 12 N -0.680 5.680 13 C 0.066 3.934 14 C -0.085 4.085 15 H 0.065 0.935 16 C -0.133 4.133 17 C 0.028 3.972 18 C -0.512 4.512 19 H 0.057 0.943 20 C 0.055 3.945 21 N -0.897 5.897 22 Si 0.890 3.110 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.052 3.948 27 C -0.110 4.110 28 C -0.122 4.122 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.338 0.662 41 H 0.068 0.932 42 H 0.024 0.976 43 H 0.062 0.938 44 H 0.040 0.960 45 H 0.030 0.970 46 H 0.015 0.985 47 H 0.014 0.986 48 H 0.259 0.741 49 H 0.050 0.950 50 H 0.085 0.915 51 H 0.118 0.882 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.288 4.251 -16.009 31.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.090 4.090 3 C -0.140 4.140 4 C -0.113 4.113 5 C -0.079 4.079 6 C -0.039 4.039 7 N -0.248 5.248 8 C -0.082 4.082 9 C -0.215 4.215 10 C -0.030 4.030 11 H 0.110 0.890 12 N -0.310 5.310 13 C -0.062 4.062 14 C -0.104 4.104 15 H 0.084 0.916 16 C -0.191 4.191 17 C -0.010 4.010 18 C -0.551 4.551 19 H 0.075 0.925 20 C -0.146 4.146 21 N -0.536 5.536 22 Si 0.718 3.282 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.076 4.076 27 C -0.128 4.128 28 C -0.140 4.140 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.158 0.842 41 H 0.086 0.914 42 H 0.042 0.958 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.049 0.951 46 H 0.034 0.966 47 H 0.032 0.968 48 H 0.068 0.932 49 H 0.069 0.931 50 H 0.103 0.897 51 H 0.136 0.864 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -26.268 5.277 -15.530 30.968 hybrid contribution 1.037 -1.803 -0.221 2.092 sum -25.231 3.474 -15.751 29.946 Atomic orbital electron populations 1.20789 0.91367 1.02744 1.02194 1.19916 0.95986 0.93281 0.99864 1.21030 0.94227 0.97451 1.01318 1.21005 0.93885 0.97697 0.98707 1.19730 0.95020 0.93212 0.99963 1.21191 0.91072 1.01602 0.89993 1.63643 1.14915 1.31302 1.14948 1.22782 0.96955 0.89493 0.99002 1.23535 0.96889 0.99133 1.01988 1.22698 0.87375 0.94153 0.98780 0.88973 1.60519 1.12156 1.47445 1.10895 1.22149 0.96131 0.98571 0.89396 1.21232 0.92317 0.97215 0.99605 0.91623 1.21738 1.02189 0.97917 0.97233 1.19115 0.95010 0.96761 0.90113 1.21278 0.92938 1.47550 0.93306 0.92516 1.25025 0.98528 0.95689 0.95346 1.69979 1.35349 1.49925 0.98388 0.86573 0.85809 0.77659 0.78175 1.19759 1.21083 1.21140 1.22991 0.85696 1.01042 0.97829 1.21053 0.94186 0.97461 1.00129 1.20979 0.94083 0.97484 1.01441 0.91298 0.91628 0.91585 0.86199 0.85947 0.89906 0.93848 0.90658 0.92708 0.90692 0.91537 0.84249 0.91385 0.95754 0.91847 0.94062 0.95094 0.96620 0.96774 0.93164 0.93142 0.89654 0.86435 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.01 36.01 0.36 -0.28 16 2 C -0.09 -0.72 5.88 -104.63 -0.62 -1.34 16 3 C -0.12 -1.00 9.70 -39.58 -0.38 -1.39 16 4 C -0.09 -0.84 9.70 -39.58 -0.38 -1.22 16 5 C -0.08 -0.73 5.10 -104.62 -0.53 -1.26 16 6 C 0.09 0.81 4.75 -4.98 -0.02 0.79 16 7 N -0.52 -5.48 5.15 -232.69 -1.20 -6.68 16 8 C 0.05 0.47 6.27 -2.84 -0.02 0.45 16 9 C -0.18 -1.92 6.52 -24.91 -0.16 -2.09 16 10 C 0.08 1.00 3.31 -65.57 -0.22 0.79 16 11 H 0.09 1.23 7.92 -51.93 -0.41 0.82 16 12 N -0.68 -9.72 6.37 -104.47 -0.67 -10.39 16 13 C 0.07 1.13 5.01 -3.82 -0.02 1.11 16 14 C -0.08 -1.72 2.54 -90.62 -0.23 -1.95 16 15 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 16 C -0.13 -2.47 8.77 37.16 0.33 -2.14 16 17 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 18 C -0.51 -14.37 8.41 -34.44 -0.29 -14.66 16 19 H 0.06 1.55 7.06 -52.48 -0.37 1.18 16 20 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 22 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 26 C 0.05 0.58 6.38 -2.30 -0.01 0.56 16 27 C -0.11 -0.96 8.74 -39.58 -0.35 -1.31 16 28 C -0.12 -1.00 9.70 -39.58 -0.38 -1.38 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 31 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 32 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.08 0.70 8.02 -51.93 -0.42 0.28 16 35 H 0.04 0.38 7.90 -51.93 -0.41 -0.03 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.51 5.51 -51.93 -0.29 0.22 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.72 7.81 -51.93 -0.41 0.32 16 40 H 0.34 4.62 6.56 -39.29 -0.26 4.36 16 41 H 0.07 1.22 8.09 -51.93 -0.42 0.80 16 42 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.03 0.48 6.68 -51.93 -0.35 0.13 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.05 0.55 7.81 -51.93 -0.41 0.14 16 50 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 51 H 0.12 0.91 6.93 -52.49 -0.36 0.55 16 52 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 405.56 15.07 6.11 6.11 Total: -1.00 -29.96 405.56 -12.70 -42.65 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -9.50 Total: 1.12 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -3.16 Total: -23.25 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: -1.13 Total: -43.36 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -29.96 -12.70 -42.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602740595.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.661 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds