Wall clock time and date at job start Tue Mar 31 2020 12:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38236 * 119.99810 * 2 1 4 4 C 1.38240 * 120.00058 * 179.97438 * 3 2 1 5 5 C 1.38232 * 119.99631 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99860 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.47107 * 89.99965 * 6 5 4 8 8 C 1.47449 * 110.99925 * 69.87541 * 7 6 5 9 9 C 1.54311 * 107.23220 * 123.25698 * 8 7 6 10 10 C 1.55140 * 103.02352 * 22.28584 * 9 8 7 11 11 H 1.08997 * 110.99089 * 82.43557 * 10 9 8 12 12 N 1.46902 * 110.99206 * 206.25719 * 10 9 8 13 13 C 1.46898 * 110.99584 * 273.54036 * 12 10 9 14 14 C 1.53001 * 109.46800 * 179.97438 * 13 12 10 15 15 H 1.09001 * 109.47263 * 55.00637 * 14 13 12 16 16 C 1.53001 * 109.47360 * 295.00167 * 14 13 12 17 17 C 1.53003 * 109.47174 * 175.00006 * 14 13 12 18 18 C 1.50697 * 109.47409 * 185.00014 * 17 14 13 19 19 H 1.08005 * 119.99787 * 0.02562 * 18 17 14 20 20 C 1.37872 * 120.00231 * 179.97438 * 18 17 14 21 21 N 1.31521 * 119.99943 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00178 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47230 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46994 * 120.00492 * 22 20 18 25 25 H 1.48506 * 109.47058 * 240.00006 * 22 20 18 26 26 C 1.47840 * 111.00178 * 190.71556 * 7 6 5 27 27 C 1.38234 * 120.00312 * 0.27932 * 5 4 3 28 28 C 1.38233 * 120.00030 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47334 * 89.99648 * 1 2 3 30 30 H 1.09001 * 109.47189 * 209.99748 * 1 2 3 31 31 H 1.09002 * 109.46991 * 329.99451 * 1 2 3 32 32 H 1.08002 * 120.00221 * 0.02562 * 3 2 1 33 33 H 1.07996 * 119.99763 * 180.02562 * 4 3 2 34 34 H 1.09002 * 109.47152 * 330.00052 * 6 5 4 35 35 H 1.09001 * 109.46980 * 210.00152 * 6 5 4 36 36 H 1.08997 * 109.88742 * 242.66510 * 8 7 6 37 37 H 1.09004 * 109.88813 * 3.68788 * 8 7 6 38 38 H 1.09003 * 110.70864 * 140.66988 * 9 8 7 39 39 H 1.09001 * 110.70797 * 263.89665 * 9 8 7 40 40 H 1.00896 * 110.99878 * 37.49826 * 12 10 9 41 41 H 1.08996 * 109.47639 * 300.00264 * 13 12 10 42 42 H 1.09002 * 109.47171 * 60.00186 * 13 12 10 43 43 H 1.09003 * 109.46808 * 179.97438 * 16 14 13 44 44 H 1.09000 * 109.47195 * 299.99899 * 16 14 13 45 45 H 1.08997 * 109.46976 * 60.00497 * 16 14 13 46 46 H 1.09004 * 109.47152 * 305.00459 * 17 14 13 47 47 H 1.09005 * 109.46820 * 64.99960 * 17 14 13 48 48 H 0.96998 * 120.00254 * 179.97438 * 21 20 18 49 49 H 1.09005 * 110.37490 * 332.47029 * 26 7 6 50 50 H 1.09002 * 110.37399 * 94.80649 * 26 7 6 51 51 H 1.07998 * 120.00015 * 179.72855 * 27 5 4 52 52 H 1.07996 * 119.99910 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0001 0.0028 7 7 6.2673 0.0007 1.3881 8 6 5.9964 -1.2915 2.0446 9 6 7.3487 -1.8441 2.5417 10 6 8.2304 -0.5716 2.6426 11 1 8.0518 -0.0461 3.5807 12 7 9.6533 -0.9040 2.4907 13 6 10.2458 -1.2833 3.7802 14 6 11.7246 -1.6222 3.5820 15 1 12.2285 -0.7832 3.1023 16 6 11.8490 -2.8649 2.6981 17 6 12.3717 -1.8962 4.9411 18 6 13.8524 -2.1091 4.7587 19 1 14.2883 -2.0541 3.7721 20 6 14.6506 -2.3731 5.8514 21 7 14.1198 -2.4396 7.0529 22 14 16.4861 -2.6363 5.6254 23 1 16.8309 -2.5098 4.1866 24 1 17.2321 -1.6155 6.4044 25 1 16.8546 -3.9923 6.1059 26 6 7.7224 0.2574 1.4367 27 6 3.5805 -1.1971 -0.0037 28 6 2.1982 -1.1971 -0.0005 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6581 2.1325 0.0004 33 1 4.1204 2.1326 0.0010 34 1 6.1424 0.8899 -0.5112 35 1 6.1424 -0.8901 -0.5104 36 1 5.3228 -1.1445 2.8888 37 1 5.5500 -1.9837 1.3306 38 1 7.2372 -2.3141 3.5188 39 1 7.7666 -2.5465 1.8205 40 1 9.7832 -1.6324 1.8047 41 1 10.1536 -0.4534 4.4807 42 1 9.7240 -2.1539 4.1778 43 1 12.9026 -3.1060 2.5565 44 1 11.3452 -3.7040 3.1779 45 1 11.3881 -2.6697 1.7298 46 1 12.2056 -1.0446 5.6009 47 1 11.9277 -2.7890 5.3815 48 1 14.6813 -2.6257 7.8216 49 1 8.1983 -0.0808 0.5162 50 1 7.9155 1.3181 1.5970 51 1 4.1206 -2.1323 -0.0073 52 1 1.6582 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602740595.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:18 Heat of formation + Delta-G solvation = -9.359803 kcal Electronic energy + Delta-G solvation = -25538.243626 eV Core-core repulsion = 22114.469791 eV Total energy + Delta-G solvation = -3423.773835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.82623 -39.77518 -38.01069 -35.72880 -34.48787 -33.39735 -31.82274 -31.29261 -29.67376 -28.83489 -28.02118 -26.50690 -25.11366 -24.17943 -23.58849 -22.10411 -21.83071 -21.24213 -20.60482 -18.55916 -17.33264 -17.23165 -16.81892 -16.55173 -16.30169 -16.08480 -15.95666 -15.28238 -14.95666 -14.61007 -14.53646 -14.38103 -14.30020 -14.21556 -13.92833 -13.81097 -13.73358 -13.30191 -13.14196 -12.96660 -12.85529 -12.74350 -12.70957 -12.58455 -12.29038 -12.26315 -12.20942 -11.89007 -11.84944 -11.71776 -11.60923 -11.48176 -11.06924 -10.90605 -10.53830 -9.77977 -9.47877 -9.33096 -9.22611 -8.17357 -6.26470 0.42446 0.54499 1.40036 1.40731 1.53671 2.42137 2.69116 3.06244 3.16195 3.34464 3.65377 3.80590 3.91803 3.96500 4.03039 4.12182 4.17567 4.20704 4.26676 4.30103 4.35148 4.44956 4.49502 4.56441 4.60945 4.67164 4.73367 4.75940 4.84636 4.85398 4.87163 4.88658 4.95441 5.00369 5.03157 5.09543 5.16290 5.22952 5.25810 5.31532 5.38935 5.48620 5.53067 5.56085 5.72158 5.74253 5.80319 5.89506 5.93159 6.07129 6.11644 6.17530 6.31475 6.49161 6.89864 7.41927 8.94853 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.045048 B = 0.001741 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.406904 B =16075.864237 C =16165.517462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C -0.132 4.132 4 C -0.107 4.107 5 C -0.092 4.092 6 C 0.092 3.908 7 N -0.531 5.531 8 C 0.051 3.949 9 C -0.169 4.169 10 C 0.080 3.920 11 H 0.079 0.921 12 N -0.676 5.676 13 C 0.081 3.919 14 C -0.076 4.076 15 H 0.057 0.943 16 C -0.126 4.126 17 C 0.032 3.968 18 C -0.528 4.528 19 H 0.061 0.939 20 C -0.003 4.003 21 N -0.936 5.936 22 Si 0.962 3.038 23 H -0.261 1.261 24 H -0.281 1.281 25 H -0.280 1.280 26 C 0.061 3.939 27 C -0.118 4.118 28 C -0.132 4.132 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.135 0.865 33 H 0.127 0.873 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.345 0.655 41 H 0.055 0.945 42 H 0.024 0.976 43 H 0.045 0.955 44 H 0.040 0.960 45 H 0.066 0.934 46 H -0.014 1.014 47 H -0.010 1.010 48 H 0.261 0.739 49 H 0.056 0.944 50 H 0.082 0.918 51 H 0.125 0.875 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.953 3.979 -17.868 32.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.098 4.098 3 C -0.150 4.150 4 C -0.125 4.125 5 C -0.093 4.093 6 C -0.035 4.035 7 N -0.255 5.255 8 C -0.077 4.077 9 C -0.209 4.209 10 C -0.032 4.032 11 H 0.098 0.902 12 N -0.308 5.308 13 C -0.048 4.048 14 C -0.095 4.095 15 H 0.075 0.925 16 C -0.183 4.183 17 C -0.006 4.006 18 C -0.566 4.566 19 H 0.080 0.920 20 C -0.200 4.200 21 N -0.576 5.576 22 Si 0.787 3.213 23 H -0.185 1.185 24 H -0.206 1.206 25 H -0.205 1.205 26 C -0.067 4.067 27 C -0.137 4.137 28 C -0.150 4.150 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.153 0.847 33 H 0.145 0.855 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.166 0.834 41 H 0.074 0.926 42 H 0.042 0.958 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.085 0.915 46 H 0.004 0.996 47 H 0.008 0.992 48 H 0.070 0.930 49 H 0.074 0.926 50 H 0.100 0.900 51 H 0.143 0.857 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -26.949 5.009 -17.412 32.474 hybrid contribution 1.158 -1.688 0.363 2.079 sum -25.791 3.320 -17.049 31.095 Atomic orbital electron populations 1.20827 0.89752 1.03430 1.02959 1.20255 0.97339 0.93143 0.99092 1.21286 0.94199 0.98361 1.01152 1.21185 0.94443 0.97926 0.98979 1.19806 0.95050 0.93601 1.00811 1.21192 0.91149 1.02057 0.89129 1.63620 1.14363 1.31502 1.16048 1.22720 0.96305 0.89613 0.99038 1.23461 0.97004 0.98430 1.01993 1.22685 0.86349 0.95119 0.99007 0.90228 1.60423 1.13551 1.47479 1.09319 1.21816 0.94260 0.98065 0.90706 1.21026 0.93852 0.97931 0.96685 0.92466 1.21641 1.01404 0.96717 0.98527 1.19011 0.94696 0.94317 0.92527 1.21679 0.94220 1.47154 0.93569 0.92041 1.25960 1.03698 0.95383 0.95000 1.70112 1.37290 1.50934 0.99310 0.85444 0.79577 0.77654 0.78649 1.18530 1.20644 1.20531 1.22872 0.86123 1.00529 0.97211 1.21215 0.94647 0.97638 1.00194 1.21245 0.94129 0.98352 1.01261 0.90405 0.90962 0.90922 0.84744 0.85472 0.89405 0.93388 0.91341 0.91562 0.91191 0.90863 0.83448 0.92619 0.95793 0.93610 0.94097 0.91513 0.99564 0.99196 0.92983 0.92572 0.89995 0.85713 0.84820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.01 71.24 0.71 -0.34 16 2 C -0.10 -1.42 5.88 -19.87 -0.12 -1.54 16 3 C -0.13 -2.01 9.70 22.27 0.22 -1.79 16 4 C -0.11 -1.80 9.70 22.27 0.22 -1.58 16 5 C -0.09 -1.60 5.10 -19.87 -0.10 -1.70 16 6 C 0.09 1.54 4.75 85.56 0.41 1.95 16 7 N -0.53 -10.41 5.15 -890.08 -4.58 -14.99 16 8 C 0.05 0.98 6.27 86.64 0.54 1.52 16 9 C -0.17 -3.47 6.52 31.77 0.21 -3.27 16 10 C 0.08 1.88 3.31 46.30 0.15 2.04 16 11 H 0.08 2.10 7.92 -2.39 -0.02 2.09 16 12 N -0.68 -18.51 6.37 -484.45 -3.09 -21.60 16 13 C 0.08 2.76 5.01 86.30 0.43 3.19 16 14 C -0.08 -3.09 2.54 -10.79 -0.03 -3.12 16 15 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 16 C -0.13 -4.50 8.77 71.98 0.63 -3.86 16 17 C 0.03 1.70 4.45 29.85 0.13 1.83 16 18 C -0.53 -30.01 8.41 25.60 0.22 -29.79 16 19 H 0.06 3.36 7.06 -2.91 -0.02 3.34 16 20 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 21 N -0.94 -57.54 13.29 21.45 0.28 -57.26 16 22 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 23 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 26 C 0.06 1.25 6.38 86.77 0.55 1.81 16 27 C -0.12 -1.92 8.74 22.27 0.19 -1.72 16 28 C -0.13 -1.98 9.70 22.27 0.22 -1.76 16 29 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.58 8.09 -2.39 -0.02 0.56 16 31 H 0.07 0.58 8.09 -2.39 -0.02 0.56 16 32 H 0.13 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.09 1.36 8.02 -2.39 -0.02 1.34 16 35 H 0.05 0.76 7.90 -2.39 -0.02 0.74 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 1.11 5.51 -2.38 -0.01 1.10 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 1.43 7.81 -2.39 -0.02 1.41 16 40 H 0.35 8.63 6.56 -89.70 -0.59 8.05 16 41 H 0.06 2.03 8.09 -2.39 -0.02 2.02 16 42 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.04 1.79 6.95 -2.39 -0.02 1.77 16 44 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.07 1.90 6.68 -2.39 -0.02 1.89 16 46 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 47 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 48 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 49 H 0.06 1.11 7.81 -2.38 -0.02 1.09 16 50 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.12 1.74 6.93 -2.91 -0.02 1.72 16 52 H 0.13 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -64.62 405.56 -0.03 -64.65 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.28 Total: 20.34 kcal Atomic # 6 Polarization: -42.93 SS G_CDS: 5.05 Total: -37.88 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -7.38 Total: -93.85 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -64.62 -0.03 -64.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602740595.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.289 kcal (2) G-P(sol) polarization free energy of solvation -64.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds