Wall clock time and date at job start Tue Mar 31 2020 10:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00396 * 2 1 4 4 H 1.48495 * 109.47466 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47191 * 300.00729 * 3 2 1 6 6 H 1.48509 * 109.46612 * 60.00160 * 3 2 1 7 7 C 1.37875 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00302 * 173.38487 * 7 2 1 9 9 C 1.50707 * 120.00077 * 353.38375 * 7 2 1 10 10 C 1.52998 * 115.54813 * 295.01556 * 9 7 2 11 11 N 1.46905 * 109.47150 * 270.11021 * 10 9 7 12 12 C 1.46847 * 110.99934 * 75.71901 * 11 10 9 13 13 C 1.53035 * 109.51917 * 185.84244 * 12 11 10 14 14 C 1.53124 * 109.27837 * 300.81525 * 13 12 11 15 15 C 1.53116 * 109.15817 * 57.65854 * 14 13 12 16 16 H 1.09004 * 109.50314 * 62.28592 * 15 14 13 17 17 C 1.50703 * 109.50418 * 182.40439 * 15 14 13 18 18 N 1.30497 * 126.36649 * 60.02245 * 17 15 14 19 19 N 1.28579 * 109.66343 * 180.02562 * 18 17 15 20 20 C 1.30674 * 109.63461 * 0.08444 * 19 18 17 21 21 N 1.35174 * 107.33246 * 359.55049 * 20 19 18 22 22 C 1.46805 * 111.15038 * 180.02562 * 21 20 19 23 23 C 1.54431 * 105.62000 * 343.36332 * 22 21 20 24 24 C 1.51340 * 142.71862 * 179.79906 * 20 19 18 25 25 C 1.46840 * 110.99853 * 199.92744 * 11 10 9 26 26 C 1.53000 * 117.51739 * 80.71373 * 9 7 2 27 27 C 1.53000 * 117.50127 * 149.34581 * 9 7 2 28 28 H 0.97000 * 119.99190 * 5.19291 * 1 2 3 29 29 H 1.08996 * 109.47438 * 150.10836 * 10 9 7 30 30 H 1.09004 * 109.47219 * 30.10614 * 10 9 7 31 31 H 1.09004 * 109.45745 * 305.85491 * 12 11 10 32 32 H 1.08998 * 109.46744 * 65.82467 * 12 11 10 33 33 H 1.08990 * 109.50723 * 60.76111 * 13 12 11 34 34 H 1.09010 * 109.50236 * 180.87876 * 13 12 11 35 35 H 1.09000 * 109.52132 * 177.56542 * 14 13 12 36 36 H 1.09002 * 109.52065 * 297.69077 * 14 13 12 37 37 H 1.08998 * 110.38892 * 224.22262 * 22 21 20 38 38 H 1.08998 * 110.07303 * 102.34582 * 22 21 20 39 39 H 1.08995 * 110.95973 * 267.25505 * 23 22 21 40 40 H 1.09008 * 110.95159 * 143.51932 * 23 22 21 41 41 H 1.09004 * 110.47364 * 315.15074 * 24 20 19 42 42 H 1.08991 * 110.47682 * 77.63324 * 24 20 19 43 43 H 1.08997 * 109.46510 * 294.17398 * 25 11 10 44 44 H 1.09003 * 109.46352 * 54.14753 * 25 11 10 45 45 H 1.09002 * 117.49906 * 214.97258 * 26 9 7 46 46 H 1.08996 * 117.49767 * 359.97438 * 26 9 7 47 47 H 1.09003 * 117.49676 * 359.97233 * 27 9 7 48 48 H 1.08994 * 117.49889 * 144.97422 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0791 -1.1972 -0.1083 9 6 1.2585 -2.4949 0.1493 10 6 0.5529 -2.7002 1.4912 11 7 1.4697 -3.3596 2.4307 12 6 2.4721 -2.4144 2.9389 13 6 3.4935 -3.1644 3.7968 14 6 2.7713 -3.8467 4.9620 15 6 1.7001 -4.7892 4.4065 16 1 2.1746 -5.5674 3.8087 17 6 0.9446 -5.4204 5.5475 18 7 0.2564 -4.7925 6.4612 19 7 -0.2549 -5.6431 7.2787 20 6 0.0863 -6.8534 6.9233 21 7 0.8482 -6.7470 5.8119 22 6 1.2801 -8.0674 5.3373 23 6 1.0525 -9.0303 6.5230 24 6 -0.0690 -8.3095 7.3054 25 6 0.7307 -3.9921 3.5307 26 6 0.5860 -3.0718 -1.0981 27 6 1.8475 -3.7300 -0.5354 28 1 -0.4849 0.8367 -0.0760 29 1 -0.3293 -3.3237 1.3463 30 1 0.2521 -1.7334 1.8952 31 1 2.9812 -1.9393 2.1002 32 1 1.9796 -1.6527 3.5433 33 1 3.9963 -3.9170 3.1896 34 1 4.2285 -2.4601 4.1866 35 1 3.4889 -4.4176 5.5512 36 1 2.3018 -3.0911 5.5920 37 1 2.3354 -8.0469 5.0656 38 1 0.6771 -8.3732 4.4823 39 1 1.9538 -9.1223 7.1290 40 1 0.7181 -10.0071 6.1733 41 1 0.0712 -8.4391 8.3786 42 1 -1.0478 -8.6810 7.0021 43 1 0.2463 -3.2230 4.1324 44 1 -0.0251 -4.6630 3.1221 45 1 -0.3592 -3.5976 -0.9626 46 1 0.6827 -2.5102 -2.0272 47 1 2.7743 -3.6015 -1.0945 48 1 1.7325 -4.6886 -0.0296 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602775021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:34 Heat of formation + Delta-G solvation = 109.865556 kcal Electronic energy + Delta-G solvation = -27199.964183 eV Core-core repulsion = 23677.820004 eV Total energy + Delta-G solvation = -3522.144179 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.45954 -38.72061 -37.45809 -36.28753 -33.34976 -32.13240 -31.93210 -30.97192 -29.32083 -27.49541 -26.19414 -25.31589 -23.59176 -22.73740 -22.41732 -21.22392 -20.94386 -20.63987 -19.12273 -18.78067 -17.27434 -16.48327 -16.06975 -15.28960 -14.95358 -14.71713 -14.46199 -14.39391 -14.00771 -13.94352 -13.80005 -13.55803 -13.31854 -13.09917 -12.77449 -12.46928 -12.13473 -12.03783 -11.84922 -11.45654 -11.37905 -11.19956 -11.08423 -10.92995 -10.85429 -10.51473 -10.39256 -10.26867 -10.24149 -10.16077 -10.05457 -9.99087 -9.35394 -8.96141 -8.73941 -8.45174 -8.02575 -7.44480 -6.01354 -4.04891 1.73163 2.30282 2.83594 3.28227 3.37796 3.40288 3.46591 3.93359 4.16350 4.22987 4.39311 4.41138 4.66909 4.83587 4.91662 4.96416 5.05844 5.11431 5.22689 5.23270 5.34793 5.40019 5.41173 5.56586 5.60897 5.70188 5.84527 5.88116 6.06073 6.09836 6.14589 6.20469 6.22318 6.33925 6.40077 6.51137 6.63455 6.71860 6.74370 6.83719 6.90642 6.99339 7.08168 7.18515 7.51590 7.57388 7.87620 8.00084 8.04306 8.51661 8.74760 8.95268 9.57703 11.06494 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021676 B = 0.003233 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.422486 B = 8659.002160 C = 9033.669779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.070 3.930 3 Si 0.883 3.117 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.489 4.489 8 H 0.059 0.941 9 C 0.059 3.941 10 C 0.105 3.895 11 N -0.529 5.529 12 C 0.055 3.945 13 C -0.114 4.114 14 C -0.106 4.106 15 C 0.006 3.994 16 H 0.089 0.911 17 C 0.215 3.785 18 N -0.283 5.283 19 N -0.283 5.283 20 C 0.143 3.857 21 N -0.494 5.494 22 C 0.101 3.899 23 C -0.128 4.128 24 C -0.038 4.038 25 C 0.068 3.932 26 C -0.180 4.180 27 C -0.190 4.190 28 H 0.259 0.741 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.104 0.896 32 H 0.025 0.975 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.040 0.960 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.748 -18.766 11.640 22.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.133 4.133 3 Si 0.711 3.289 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.527 4.527 8 H 0.078 0.922 9 C 0.058 3.942 10 C -0.022 4.022 11 N -0.253 5.253 12 C -0.072 4.072 13 C -0.152 4.152 14 C -0.144 4.144 15 C -0.015 4.015 16 H 0.108 0.892 17 C -0.052 4.052 18 N -0.122 5.122 19 N -0.123 5.123 20 C -0.125 4.125 21 N -0.186 5.186 22 C -0.021 4.021 23 C -0.167 4.167 24 C -0.078 4.078 25 C -0.061 4.061 26 C -0.219 4.219 27 C -0.227 4.227 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.122 0.878 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.058 0.942 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.087 0.913 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.254 -17.778 12.111 21.756 hybrid contribution 0.378 0.524 -0.407 0.763 sum 3.632 -17.254 11.704 21.163 Atomic orbital electron populations 1.69985 1.05852 1.26567 1.49122 1.24976 0.94754 0.98760 0.94792 0.86671 0.80365 0.84204 0.77637 1.19634 1.21121 1.20965 1.20532 0.92931 0.88950 1.50276 0.92238 1.18715 0.96703 0.91018 0.87717 1.21626 0.91809 0.96255 0.92489 1.61942 1.15973 1.33513 1.13893 1.22189 0.93372 0.92771 0.98905 1.21625 0.97967 0.99741 0.95896 1.21584 0.96374 0.98203 0.98252 1.19671 0.94776 0.97576 0.89509 0.89234 1.24673 1.01584 0.78447 1.00459 1.74442 1.11311 1.23930 1.02517 1.73992 1.20839 0.95761 1.21707 1.25905 0.98142 0.98070 0.90364 1.47242 1.40043 1.07004 1.24317 1.22401 1.02557 0.78481 0.98669 1.22807 0.99621 0.98741 0.95498 1.20612 1.00402 0.84254 1.02488 1.21944 0.94330 0.97446 0.92413 1.22749 0.93812 1.04515 1.00805 1.22670 0.96367 0.97650 1.06019 0.93083 0.94166 0.92927 0.87835 0.95633 0.91370 0.91637 0.92617 0.91049 0.88534 0.88633 0.89276 0.87782 0.88131 0.88213 0.94186 0.91802 0.92313 0.90643 0.91274 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.59 12.61 55.43 0.70 -23.89 16 2 C 0.07 1.88 5.21 -17.82 -0.09 1.79 16 3 Si 0.88 20.80 29.55 -169.99 -5.02 15.77 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.49 -12.83 7.04 -34.44 -0.24 -13.07 16 8 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 9 C 0.06 1.43 1.24 -155.66 -0.19 1.23 16 10 C 0.10 2.39 4.88 -3.82 -0.02 2.37 16 11 N -0.53 -10.17 4.38 -234.67 -1.03 -11.20 16 12 C 0.06 1.04 5.24 -3.84 -0.02 1.02 16 13 C -0.11 -1.69 6.09 -26.65 -0.16 -1.86 16 14 C -0.11 -1.49 5.27 -26.61 -0.14 -1.63 16 15 C 0.01 0.09 2.82 -91.69 -0.26 -0.17 16 16 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 17 C 0.21 3.22 6.81 -154.90 -1.06 2.16 16 18 N -0.28 -5.03 12.21 32.81 0.40 -4.63 16 19 N -0.28 -4.74 12.22 32.93 0.40 -4.33 16 20 C 0.14 1.78 8.69 -154.84 -1.35 0.43 16 21 N -0.49 -5.86 3.63 -109.38 -0.40 -6.26 16 22 C 0.10 0.67 7.77 -3.13 -0.02 0.65 16 23 C -0.13 -0.50 7.17 -25.15 -0.18 -0.68 16 24 C -0.04 -0.24 6.85 -26.74 -0.18 -0.42 16 25 C 0.07 1.18 4.69 -3.84 -0.02 1.16 16 26 C -0.18 -4.21 9.88 -26.73 -0.26 -4.48 16 27 C -0.19 -4.11 9.74 -26.73 -0.26 -4.37 16 28 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 29 H 0.04 0.90 7.53 -51.93 -0.39 0.51 16 30 H 0.05 1.36 7.12 -51.93 -0.37 0.99 16 31 H 0.10 2.19 6.05 -51.93 -0.31 1.88 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.10 0.14 8.14 -51.92 -0.42 -0.28 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 45 H 0.06 1.31 8.03 -51.93 -0.42 0.89 16 46 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 47 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 48 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -31.91 378.39 -11.92 -43.83 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -8.21 Total: 0.87 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -4.46 Total: -15.86 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.08 Total: -50.31 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.91 -11.92 -43.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602775021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.697 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds