Wall clock time and date at job start Tue Mar 31 2020 10:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00396 * 2 1 4 4 H 1.48495 * 109.47466 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47191 * 300.00729 * 3 2 1 6 6 H 1.48509 * 109.46612 * 60.00160 * 3 2 1 7 7 C 1.37875 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00302 * 173.38487 * 7 2 1 9 9 C 1.50707 * 120.00077 * 353.38375 * 7 2 1 10 10 C 1.52998 * 115.54813 * 295.01556 * 9 7 2 11 11 N 1.46905 * 109.47150 * 270.11021 * 10 9 7 12 12 C 1.46847 * 110.99934 * 75.71901 * 11 10 9 13 13 C 1.53035 * 109.51917 * 185.84244 * 12 11 10 14 14 C 1.53124 * 109.27837 * 300.81525 * 13 12 11 15 15 C 1.53116 * 109.15817 * 57.65854 * 14 13 12 16 16 H 1.09004 * 109.50314 * 62.28592 * 15 14 13 17 17 C 1.50703 * 109.50418 * 182.40439 * 15 14 13 18 18 N 1.30497 * 126.36649 * 60.02245 * 17 15 14 19 19 N 1.28579 * 109.66343 * 180.02562 * 18 17 15 20 20 C 1.30674 * 109.63461 * 0.08444 * 19 18 17 21 21 N 1.35174 * 107.33246 * 359.55049 * 20 19 18 22 22 C 1.46805 * 111.15038 * 180.02562 * 21 20 19 23 23 C 1.54431 * 105.62000 * 343.36332 * 22 21 20 24 24 C 1.51340 * 142.71862 * 179.79906 * 20 19 18 25 25 C 1.46840 * 110.99853 * 199.92744 * 11 10 9 26 26 C 1.53000 * 117.51739 * 80.71373 * 9 7 2 27 27 C 1.53000 * 117.50127 * 149.34581 * 9 7 2 28 28 H 0.97000 * 119.99190 * 5.19291 * 1 2 3 29 29 H 1.08996 * 109.47438 * 150.10836 * 10 9 7 30 30 H 1.09004 * 109.47219 * 30.10614 * 10 9 7 31 31 H 1.09004 * 109.45745 * 305.85491 * 12 11 10 32 32 H 1.08998 * 109.46744 * 65.82467 * 12 11 10 33 33 H 1.08990 * 109.50723 * 60.76111 * 13 12 11 34 34 H 1.09010 * 109.50236 * 180.87876 * 13 12 11 35 35 H 1.09000 * 109.52132 * 177.56542 * 14 13 12 36 36 H 1.09002 * 109.52065 * 297.69077 * 14 13 12 37 37 H 1.08998 * 110.38892 * 224.22262 * 22 21 20 38 38 H 1.08998 * 110.07303 * 102.34582 * 22 21 20 39 39 H 1.08995 * 110.95973 * 267.25505 * 23 22 21 40 40 H 1.09008 * 110.95159 * 143.51932 * 23 22 21 41 41 H 1.09004 * 110.47364 * 315.15074 * 24 20 19 42 42 H 1.08991 * 110.47682 * 77.63324 * 24 20 19 43 43 H 1.08997 * 109.46510 * 294.17398 * 25 11 10 44 44 H 1.09003 * 109.46352 * 54.14753 * 25 11 10 45 45 H 1.09002 * 117.49906 * 214.97258 * 26 9 7 46 46 H 1.08996 * 117.49767 * 359.97438 * 26 9 7 47 47 H 1.09003 * 117.49676 * 359.97233 * 27 9 7 48 48 H 1.08994 * 117.49889 * 144.97422 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0791 -1.1972 -0.1083 9 6 1.2585 -2.4949 0.1493 10 6 0.5529 -2.7002 1.4912 11 7 1.4697 -3.3596 2.4307 12 6 2.4721 -2.4144 2.9389 13 6 3.4935 -3.1644 3.7968 14 6 2.7713 -3.8467 4.9620 15 6 1.7001 -4.7892 4.4065 16 1 2.1746 -5.5674 3.8087 17 6 0.9446 -5.4204 5.5475 18 7 0.2564 -4.7925 6.4612 19 7 -0.2549 -5.6431 7.2787 20 6 0.0863 -6.8534 6.9233 21 7 0.8482 -6.7470 5.8119 22 6 1.2801 -8.0674 5.3373 23 6 1.0525 -9.0303 6.5230 24 6 -0.0690 -8.3095 7.3054 25 6 0.7307 -3.9921 3.5307 26 6 0.5860 -3.0718 -1.0981 27 6 1.8475 -3.7300 -0.5354 28 1 -0.4849 0.8367 -0.0760 29 1 -0.3293 -3.3237 1.3463 30 1 0.2521 -1.7334 1.8952 31 1 2.9812 -1.9393 2.1002 32 1 1.9796 -1.6527 3.5433 33 1 3.9963 -3.9170 3.1896 34 1 4.2285 -2.4601 4.1866 35 1 3.4889 -4.4176 5.5512 36 1 2.3018 -3.0911 5.5920 37 1 2.3354 -8.0469 5.0656 38 1 0.6771 -8.3732 4.4823 39 1 1.9538 -9.1223 7.1290 40 1 0.7181 -10.0071 6.1733 41 1 0.0712 -8.4391 8.3786 42 1 -1.0478 -8.6810 7.0021 43 1 0.2463 -3.2230 4.1324 44 1 -0.0251 -4.6630 3.1221 45 1 -0.3592 -3.5976 -0.9626 46 1 0.6827 -2.5102 -2.0272 47 1 2.7743 -3.6015 -1.0945 48 1 1.7325 -4.6886 -0.0296 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602775021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:34 Heat of formation + Delta-G solvation = 92.034290 kcal Electronic energy + Delta-G solvation = -27200.737404 eV Core-core repulsion = 23677.820004 eV Total energy + Delta-G solvation = -3522.917401 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.42900 -40.19670 -38.25439 -37.93911 -34.66829 -34.02720 -33.23554 -31.99547 -30.23514 -28.39109 -27.92030 -27.20376 -24.84142 -23.88760 -23.37634 -22.76966 -22.12964 -21.73843 -20.64831 -20.35968 -18.13079 -17.93995 -17.34509 -16.74106 -16.50352 -15.90737 -15.89103 -15.65719 -15.54677 -15.03663 -14.80964 -14.60361 -14.30526 -14.20014 -14.09733 -13.94304 -13.47063 -13.25434 -12.93288 -12.91693 -12.68130 -12.61852 -12.44325 -12.40139 -12.26934 -12.18572 -11.94838 -11.77597 -11.57681 -11.45320 -11.30776 -11.19757 -10.93930 -10.72990 -10.40715 -10.07083 -9.89928 -9.13504 -8.08005 -6.15530 0.77375 1.38150 1.42730 1.50520 1.51665 1.76016 2.42846 2.74208 2.98370 3.17966 3.34532 3.49503 3.65904 3.76927 3.80286 3.90773 4.01313 4.11397 4.17360 4.31368 4.38801 4.45655 4.46977 4.52517 4.55030 4.62368 4.69644 4.73565 4.78499 4.84169 4.86817 4.96096 4.99103 5.01884 5.08596 5.10318 5.11301 5.12147 5.19732 5.23752 5.31437 5.38752 5.47048 5.65871 5.70905 5.85438 5.89775 6.27087 6.37770 6.48786 6.91077 7.49247 7.69853 8.99700 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021676 B = 0.003233 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.422486 B = 8659.002160 C = 9033.669779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.024 3.976 3 Si 0.940 3.060 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.287 1.287 7 C -0.492 4.492 8 H 0.055 0.945 9 C 0.035 3.965 10 C 0.119 3.881 11 N -0.517 5.517 12 C 0.056 3.944 13 C -0.102 4.102 14 C -0.099 4.099 15 C 0.020 3.980 16 H 0.112 0.888 17 C 0.203 3.797 18 N -0.330 5.330 19 N -0.341 5.341 20 C 0.151 3.849 21 N -0.492 5.492 22 C 0.085 3.915 23 C -0.111 4.111 24 C -0.039 4.039 25 C 0.074 3.926 26 C -0.188 4.188 27 C -0.159 4.159 28 H 0.257 0.743 29 H 0.037 0.963 30 H 0.011 0.989 31 H 0.080 0.920 32 H 0.001 0.999 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.140 0.860 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.011 0.989 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.074 0.926 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.749 -22.297 12.131 26.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.175 4.175 3 Si 0.766 3.234 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.214 1.214 7 C -0.530 4.530 8 H 0.073 0.927 9 C 0.034 3.966 10 C -0.008 4.008 11 N -0.241 5.241 12 C -0.072 4.072 13 C -0.140 4.140 14 C -0.137 4.137 15 C -0.002 4.002 16 H 0.130 0.870 17 C -0.065 4.065 18 N -0.169 5.169 19 N -0.180 5.180 20 C -0.118 4.118 21 N -0.183 5.183 22 C -0.034 4.034 23 C -0.149 4.149 24 C -0.079 4.079 25 C -0.056 4.056 26 C -0.226 4.226 27 C -0.196 4.196 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.029 0.971 31 H 0.098 0.902 32 H 0.020 0.980 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.158 0.842 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.030 0.970 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.092 0.908 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.283 -21.341 12.598 25.339 hybrid contribution -0.287 1.534 -0.546 1.654 sum 4.996 -19.807 12.052 23.718 Atomic orbital electron populations 1.70097 1.07136 1.26986 1.50613 1.25618 0.95388 1.01675 0.94858 0.85782 0.79725 0.80667 0.77227 1.18563 1.20981 1.21359 1.20762 0.92822 0.90142 1.49275 0.92681 1.18773 0.97896 0.91580 0.88366 1.21312 0.92291 0.94385 0.92841 1.61971 1.15221 1.32678 1.14186 1.22152 0.93821 0.92890 0.98290 1.21549 0.96911 1.00036 0.95478 1.21516 0.96558 0.97827 0.97829 1.19521 0.93874 0.97639 0.89127 0.86977 1.24506 1.01773 0.80034 1.00183 1.74313 1.12783 1.25926 1.03899 1.73846 1.23218 0.97750 1.23223 1.26978 0.95889 0.99179 0.89736 1.47555 1.39389 1.07363 1.24022 1.22960 1.03810 0.76320 1.00354 1.22894 0.99066 0.99069 0.93835 1.21007 1.02482 0.80408 1.03969 1.21901 0.95048 0.96828 0.91792 1.22703 0.95205 1.05005 0.99731 1.22648 0.95464 0.97265 1.04220 0.93395 0.94438 0.97073 0.90171 0.98047 0.89774 0.89949 0.90035 0.93237 0.86870 0.87363 0.88153 0.84215 0.86644 0.86515 0.97031 0.91852 0.91556 0.92295 0.90793 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.71 12.61 21.45 0.27 -52.44 16 2 C 0.02 1.33 5.21 84.65 0.44 1.77 16 3 Si 0.94 43.56 29.55 68.60 2.03 45.58 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 7 C -0.49 -26.22 7.04 25.60 0.18 -26.04 16 8 H 0.06 2.92 7.82 -2.91 -0.02 2.90 16 9 C 0.03 1.68 1.24 -52.93 -0.07 1.62 16 10 C 0.12 5.61 4.88 86.30 0.42 6.03 16 11 N -0.52 -20.04 4.38 -896.37 -3.93 -23.97 16 12 C 0.06 2.16 5.24 86.32 0.45 2.61 16 13 C -0.10 -2.85 6.09 30.65 0.19 -2.67 16 14 C -0.10 -2.67 5.27 30.67 0.16 -2.51 16 15 C 0.02 0.55 2.82 -11.49 -0.03 0.51 16 16 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 17 C 0.20 5.99 6.81 137.95 0.94 6.93 16 18 N -0.33 -12.12 12.21 -50.10 -0.61 -12.73 16 19 N -0.34 -11.64 12.22 -49.74 -0.61 -12.25 16 20 C 0.15 3.56 8.69 138.24 1.20 4.76 16 21 N -0.49 -10.65 3.63 -499.97 -1.81 -12.46 16 22 C 0.09 0.78 7.77 86.81 0.67 1.45 16 23 C -0.11 -0.31 7.17 31.62 0.23 -0.08 16 24 C -0.04 -0.36 6.85 30.59 0.21 -0.15 16 25 C 0.07 2.60 4.69 86.33 0.40 3.00 16 26 C -0.19 -8.79 9.88 30.60 0.30 -8.48 16 27 C -0.16 -6.64 9.74 30.60 0.30 -6.34 16 28 H 0.26 14.36 8.32 -92.71 -0.77 13.59 16 29 H 0.04 1.73 7.53 -2.39 -0.02 1.72 16 30 H 0.01 0.60 7.12 -2.38 -0.02 0.58 16 31 H 0.08 3.45 6.05 -2.38 -0.01 3.43 16 32 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.14 -0.50 8.14 -2.38 -0.02 -0.52 16 41 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.06 2.21 7.93 -2.39 -0.02 2.19 16 45 H 0.07 2.95 8.03 -2.39 -0.02 2.93 16 46 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 47 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 48 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 Total: -1.00 -74.28 378.39 2.27 -72.02 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.93 Total: 13.83 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 6.00 Total: -17.58 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -6.69 Total: -113.85 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -74.28 2.27 -72.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602775021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.051 kcal (2) G-P(sol) polarization free energy of solvation -74.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds