Wall clock time and date at job start Tue Mar 31 2020 11:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38610 * 120.40521 * 2 1 4 4 C 1.38605 * 118.56034 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.39997 * 179.97438 * 4 3 2 6 6 N 1.32271 * 119.19735 * 0.02562 * 4 3 2 7 7 C 1.32500 * 120.74246 * 359.97438 * 6 4 3 8 8 N 1.38408 * 119.21485 * 180.02562 * 7 6 4 9 9 C 1.46955 * 110.99687 * 180.02562 * 8 7 6 10 10 C 1.53051 * 109.36481 * 183.18764 * 9 8 7 11 11 N 1.46952 * 109.36256 * 301.59677 * 10 9 8 12 12 C 1.46903 * 110.99696 * 183.18475 * 11 10 9 13 13 C 1.53003 * 109.47021 * 160.86208 * 12 11 10 14 14 C 1.50707 * 115.54649 * 60.49312 * 13 12 11 15 15 H 1.07996 * 119.99924 * 232.83183 * 14 13 12 16 16 C 1.37883 * 119.99857 * 52.83772 * 14 13 12 17 17 N 1.31520 * 119.99743 * 5.88242 * 16 14 13 18 18 Si 1.86791 * 119.99997 * 186.16073 * 16 14 13 19 19 H 1.48503 * 109.47579 * 59.99697 * 18 16 14 20 20 H 1.48501 * 109.47389 * 180.02562 * 18 16 14 21 21 H 1.48511 * 109.47161 * 299.99763 * 18 16 14 22 22 C 1.52998 * 117.50177 * 206.16370 * 13 12 11 23 23 C 1.53000 * 117.50282 * 274.82567 * 13 12 11 24 24 C 1.46955 * 110.87958 * 59.32192 * 11 10 9 25 25 C 1.46952 * 110.99953 * 303.79947 * 8 7 6 26 26 N 1.32279 * 120.40378 * 180.30073 * 2 1 3 27 27 H 1.09005 * 109.47031 * 89.99799 * 1 2 3 28 28 H 1.08995 * 109.47144 * 209.99473 * 1 2 3 29 29 H 1.08999 * 109.47123 * 330.00172 * 1 2 3 30 30 H 1.08004 * 120.71745 * 0.04209 * 3 2 1 31 31 H 1.08995 * 109.47349 * 270.02449 * 5 4 3 32 32 H 1.08999 * 109.47166 * 30.01997 * 5 4 3 33 33 H 1.08997 * 109.47001 * 150.02155 * 5 4 3 34 34 H 1.09003 * 109.49083 * 63.22037 * 9 8 7 35 35 H 1.09007 * 109.48948 * 303.15925 * 9 8 7 36 36 H 1.09004 * 109.48919 * 181.62683 * 10 9 8 37 37 H 1.09000 * 109.48361 * 61.56645 * 10 9 8 38 38 H 1.08998 * 109.46829 * 40.86723 * 12 11 10 39 39 H 1.08994 * 109.47184 * 280.86321 * 12 11 10 40 40 H 0.96999 * 119.99800 * 185.06256 * 17 16 14 41 41 H 1.08999 * 117.50125 * 215.00806 * 22 13 12 42 42 H 1.09005 * 117.49510 * 0.02562 * 22 13 12 43 43 H 1.09000 * 117.49465 * 359.97438 * 23 13 12 44 44 H 1.08992 * 117.49885 * 144.97008 * 23 13 12 45 45 H 1.09003 * 109.49083 * 60.64401 * 24 11 10 46 46 H 1.09002 * 109.49193 * 180.70940 * 24 11 10 47 47 H 1.09003 * 109.49165 * 296.78259 * 25 8 7 48 48 H 1.09001 * 109.48952 * 56.82639 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2084 1.1955 0.0000 4 6 3.5938 1.1508 -0.0005 5 6 4.3978 2.4254 -0.0011 6 7 4.2015 -0.0240 -0.0016 7 6 3.5012 -1.1488 -0.0015 8 7 4.1697 -2.3608 -0.0021 9 6 3.2227 -3.4845 -0.0026 10 6 3.9980 -4.8016 0.0771 11 7 4.9206 -4.8937 -1.0630 12 6 5.6301 -6.1800 -1.0635 13 6 6.1960 -6.4497 -2.4592 14 6 7.1835 -5.4312 -2.9681 15 1 7.0335 -4.9687 -3.9324 16 6 8.2783 -5.0900 -2.2025 17 7 8.5244 -5.7348 -1.0830 18 14 9.4074 -3.7070 -2.7515 19 1 8.6317 -2.4445 -2.8510 20 1 10.5020 -3.5393 -1.7621 21 1 9.9866 -4.0379 -4.0784 22 6 6.4151 -7.9091 -2.8629 23 6 5.2683 -7.1070 -3.4830 24 6 5.8676 -3.7700 -1.0625 25 6 5.0919 -2.4530 -1.1425 26 7 2.1764 -1.1409 -0.0060 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5138 30 1 1.6868 2.1412 0.0007 31 1 4.5909 2.7327 -1.0289 32 1 3.8393 3.2076 0.5130 33 1 5.3447 2.2579 0.5120 34 1 2.6343 -3.4638 -0.9199 35 1 2.5585 -3.4007 0.8577 36 1 3.2990 -5.6375 0.0477 37 1 4.5651 -4.8340 1.0074 38 1 4.9377 -6.9769 -0.7921 39 1 6.4456 -6.1455 -0.3412 40 1 9.2507 -5.4477 -0.5076 41 1 7.2734 -8.1327 -3.4965 42 1 6.1556 -8.6772 -2.1343 43 1 4.2548 -7.3477 -3.1620 44 1 5.3718 -6.8026 -4.5244 45 1 6.4560 -3.7906 -0.1452 46 1 6.5317 -3.8536 -1.9228 47 1 4.5244 -2.4208 -2.0726 48 1 5.7907 -1.6170 -1.1137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602794681.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:54 Heat of formation + Delta-G solvation = 102.779209 kcal Electronic energy + Delta-G solvation = -27376.376403 eV Core-core repulsion = 23853.924937 eV Total energy + Delta-G solvation = -3522.451466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.21963 -38.75287 -36.76727 -34.81215 -34.53087 -32.28044 -31.92557 -30.49229 -29.26487 -27.77633 -27.22316 -25.73915 -23.79200 -23.13615 -21.98127 -21.33981 -21.02883 -19.23394 -18.97497 -17.57894 -17.02536 -16.03606 -15.54853 -15.49627 -14.74223 -14.47949 -14.27132 -14.12941 -14.03752 -13.76850 -13.62610 -13.48809 -13.21014 -13.02603 -12.71373 -12.64012 -12.32549 -12.26189 -11.89210 -11.52120 -11.11838 -11.04147 -10.95229 -10.76965 -10.65374 -10.44510 -10.31650 -10.21132 -10.18516 -10.05143 -9.77911 -9.31278 -9.08517 -8.87446 -8.52276 -8.16213 -8.00861 -7.23694 -6.07371 -4.05962 1.01672 1.13403 3.26883 3.32241 3.33694 3.35925 3.76701 4.03980 4.33262 4.34025 4.72571 4.76659 5.04285 5.08455 5.13497 5.15740 5.31624 5.32894 5.38678 5.46806 5.55458 5.60482 5.61227 5.68692 5.81675 5.81758 5.91197 5.96050 6.08885 6.18836 6.27129 6.36703 6.40736 6.44634 6.65983 6.70540 6.83272 6.84298 6.94780 6.98961 7.04525 7.21948 7.37016 7.45212 7.46840 7.51511 7.85311 8.16029 8.22199 8.30744 8.47915 8.87368 9.46196 10.96408 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015524 B = 0.004079 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.238902 B = 6862.443410 C = 8127.241559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.199 3.801 3 C -0.275 4.275 4 C 0.201 3.799 5 C -0.105 4.105 6 N -0.537 5.537 7 C 0.510 3.490 8 N -0.460 5.460 9 C 0.080 3.920 10 C 0.050 3.950 11 N -0.523 5.523 12 C 0.096 3.904 13 C 0.063 3.937 14 C -0.479 4.479 15 H 0.060 0.940 16 C 0.071 3.929 17 N -0.874 5.874 18 Si 0.875 3.125 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.193 4.193 23 C -0.200 4.200 24 C 0.042 3.958 25 C 0.071 3.929 26 N -0.558 5.558 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.140 0.860 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.032 0.968 38 H 0.033 0.967 39 H 0.071 0.929 40 H 0.262 0.738 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.031 0.969 46 H 0.145 0.855 47 H 0.047 0.953 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.815 12.683 3.632 18.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.052 3.948 3 C -0.299 4.299 4 C 0.053 3.947 5 C -0.162 4.162 6 N -0.257 5.257 7 C 0.155 3.845 8 N -0.179 5.179 9 C -0.047 4.047 10 C -0.079 4.079 11 N -0.248 5.248 12 C -0.031 4.031 13 C 0.062 3.938 14 C -0.516 4.516 15 H 0.078 0.922 16 C -0.132 4.132 17 N -0.511 5.511 18 Si 0.702 3.298 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.201 1.201 22 C -0.231 4.231 23 C -0.237 4.237 24 C -0.085 4.085 25 C -0.055 4.055 26 N -0.280 5.280 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.158 0.842 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.049 0.951 46 H 0.162 0.838 47 H 0.066 0.934 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.090 11.664 3.758 17.215 hybrid contribution 0.239 1.447 0.099 1.470 sum -11.851 13.112 3.857 18.090 Atomic orbital electron populations 1.20755 0.88133 1.03754 1.03511 1.21531 0.97148 0.87869 0.88291 1.22287 0.95559 1.00088 1.11937 1.21549 0.91373 0.93492 0.88314 1.20764 1.00239 0.91630 1.03594 1.67884 1.40963 0.97623 1.19219 1.21207 0.84859 0.90336 0.88132 1.58723 1.18164 0.98852 1.42199 1.22067 0.92673 0.87717 1.02250 1.22226 0.96324 0.95634 0.93724 1.62058 1.19821 1.03701 1.39201 1.21583 0.95222 0.87342 0.98969 1.18756 0.94390 0.90269 0.90389 1.20434 1.05291 1.22106 1.03793 0.92150 1.24942 0.96428 0.96280 0.95547 1.69931 1.30600 1.38182 1.12390 0.86929 0.80961 0.83153 0.78768 1.19608 1.21029 1.20066 1.22847 0.99071 0.97464 1.03741 1.22779 0.93671 1.08490 0.98764 1.22989 0.94030 0.86247 1.05236 1.22507 0.94023 1.00926 0.87994 1.68265 1.08756 1.30635 1.20359 0.89824 0.90048 0.90325 0.84177 0.89737 0.90278 0.89913 0.92344 0.90200 0.90704 0.95015 0.94810 0.91059 0.92783 0.90560 0.92049 0.91578 0.91023 0.95070 0.83836 0.93413 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 10.22 36.00 0.37 -0.50 16 2 C 0.20 2.51 6.82 -82.27 -0.56 1.95 16 3 C -0.27 -3.11 9.53 -39.31 -0.37 -3.48 16 4 C 0.20 2.64 6.82 -82.27 -0.56 2.08 16 5 C -0.10 -0.95 10.22 36.01 0.37 -0.58 16 6 N -0.54 -9.08 9.65 -10.15 -0.10 -9.18 16 7 C 0.51 9.03 7.17 -322.80 -2.31 6.71 16 8 N -0.46 -8.60 4.77 -175.23 -0.84 -9.44 16 9 C 0.08 1.38 4.76 -3.77 -0.02 1.36 16 10 C 0.05 0.91 5.57 -3.77 -0.02 0.89 16 11 N -0.52 -11.09 4.64 -234.46 -1.09 -12.18 16 12 C 0.10 2.19 4.77 -3.82 -0.02 2.17 16 13 C 0.06 1.51 1.77 -155.66 -0.28 1.23 16 14 C -0.48 -12.35 6.53 -34.43 -0.22 -12.57 16 15 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 16 C 0.07 1.83 3.66 -17.82 -0.07 1.76 16 17 N -0.87 -23.34 11.48 55.43 0.64 -22.71 16 18 Si 0.88 20.16 29.03 -169.99 -4.94 15.23 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.19 -4.41 9.95 -26.69 -0.27 -4.67 16 23 C -0.20 -4.38 9.95 -26.69 -0.27 -4.65 16 24 C 0.04 0.93 4.74 -3.77 -0.02 0.91 16 25 C 0.07 1.40 5.46 -3.77 -0.02 1.38 16 26 N -0.56 -8.89 8.63 -10.15 -0.09 -8.98 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 30 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 1.04 8.03 -51.93 -0.42 0.62 16 35 H 0.08 1.29 7.81 -51.93 -0.41 0.88 16 36 H 0.07 1.24 8.00 -51.93 -0.42 0.82 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.03 0.72 7.82 -51.93 -0.41 0.32 16 39 H 0.07 1.82 6.19 -51.93 -0.32 1.50 16 40 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 41 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 44 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 45 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.14 3.49 3.23 -51.93 -0.17 3.32 16 47 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 48 H 0.09 1.70 7.64 -51.93 -0.40 1.31 16 LS Contribution 376.13 15.07 5.67 5.67 Total: -1.00 -28.79 376.13 -13.00 -41.79 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.99 Total: 5.79 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -4.27 Total: -6.00 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: -1.47 Total: -62.47 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.94 Total: 15.23 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.79 -13.00 -41.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602794681.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.571 kcal (2) G-P(sol) polarization free energy of solvation -28.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds