Wall clock time and date at job start Tue Mar 31 2020 11:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38610 * 120.40521 * 2 1 4 4 C 1.38605 * 118.56034 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.39997 * 179.97438 * 4 3 2 6 6 N 1.32271 * 119.19735 * 0.02562 * 4 3 2 7 7 C 1.32500 * 120.74246 * 359.97438 * 6 4 3 8 8 N 1.38408 * 119.21485 * 180.02562 * 7 6 4 9 9 C 1.46955 * 110.99687 * 180.02562 * 8 7 6 10 10 C 1.53051 * 109.36481 * 183.18764 * 9 8 7 11 11 N 1.46952 * 109.36256 * 301.59677 * 10 9 8 12 12 C 1.46903 * 110.99696 * 183.18475 * 11 10 9 13 13 C 1.53003 * 109.47021 * 160.86208 * 12 11 10 14 14 C 1.50707 * 115.54649 * 60.49312 * 13 12 11 15 15 H 1.07996 * 119.99924 * 232.83183 * 14 13 12 16 16 C 1.37883 * 119.99857 * 52.83772 * 14 13 12 17 17 N 1.31520 * 119.99743 * 5.88242 * 16 14 13 18 18 Si 1.86791 * 119.99997 * 186.16073 * 16 14 13 19 19 H 1.48503 * 109.47579 * 59.99697 * 18 16 14 20 20 H 1.48501 * 109.47389 * 180.02562 * 18 16 14 21 21 H 1.48511 * 109.47161 * 299.99763 * 18 16 14 22 22 C 1.52998 * 117.50177 * 206.16370 * 13 12 11 23 23 C 1.53000 * 117.50282 * 274.82567 * 13 12 11 24 24 C 1.46955 * 110.87958 * 59.32192 * 11 10 9 25 25 C 1.46952 * 110.99953 * 303.79947 * 8 7 6 26 26 N 1.32279 * 120.40378 * 180.30073 * 2 1 3 27 27 H 1.09005 * 109.47031 * 89.99799 * 1 2 3 28 28 H 1.08995 * 109.47144 * 209.99473 * 1 2 3 29 29 H 1.08999 * 109.47123 * 330.00172 * 1 2 3 30 30 H 1.08004 * 120.71745 * 0.04209 * 3 2 1 31 31 H 1.08995 * 109.47349 * 270.02449 * 5 4 3 32 32 H 1.08999 * 109.47166 * 30.01997 * 5 4 3 33 33 H 1.08997 * 109.47001 * 150.02155 * 5 4 3 34 34 H 1.09003 * 109.49083 * 63.22037 * 9 8 7 35 35 H 1.09007 * 109.48948 * 303.15925 * 9 8 7 36 36 H 1.09004 * 109.48919 * 181.62683 * 10 9 8 37 37 H 1.09000 * 109.48361 * 61.56645 * 10 9 8 38 38 H 1.08998 * 109.46829 * 40.86723 * 12 11 10 39 39 H 1.08994 * 109.47184 * 280.86321 * 12 11 10 40 40 H 0.96999 * 119.99800 * 185.06256 * 17 16 14 41 41 H 1.08999 * 117.50125 * 215.00806 * 22 13 12 42 42 H 1.09005 * 117.49510 * 0.02562 * 22 13 12 43 43 H 1.09000 * 117.49465 * 359.97438 * 23 13 12 44 44 H 1.08992 * 117.49885 * 144.97008 * 23 13 12 45 45 H 1.09003 * 109.49083 * 60.64401 * 24 11 10 46 46 H 1.09002 * 109.49193 * 180.70940 * 24 11 10 47 47 H 1.09003 * 109.49165 * 296.78259 * 25 8 7 48 48 H 1.09001 * 109.48952 * 56.82639 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2084 1.1955 0.0000 4 6 3.5938 1.1508 -0.0005 5 6 4.3978 2.4254 -0.0011 6 7 4.2015 -0.0240 -0.0016 7 6 3.5012 -1.1488 -0.0015 8 7 4.1697 -2.3608 -0.0021 9 6 3.2227 -3.4845 -0.0026 10 6 3.9980 -4.8016 0.0771 11 7 4.9206 -4.8937 -1.0630 12 6 5.6301 -6.1800 -1.0635 13 6 6.1960 -6.4497 -2.4592 14 6 7.1835 -5.4312 -2.9681 15 1 7.0335 -4.9687 -3.9324 16 6 8.2783 -5.0900 -2.2025 17 7 8.5244 -5.7348 -1.0830 18 14 9.4074 -3.7070 -2.7515 19 1 8.6317 -2.4445 -2.8510 20 1 10.5020 -3.5393 -1.7621 21 1 9.9866 -4.0379 -4.0784 22 6 6.4151 -7.9091 -2.8629 23 6 5.2683 -7.1070 -3.4830 24 6 5.8676 -3.7700 -1.0625 25 6 5.0919 -2.4530 -1.1425 26 7 2.1764 -1.1409 -0.0060 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5138 30 1 1.6868 2.1412 0.0007 31 1 4.5909 2.7327 -1.0289 32 1 3.8393 3.2076 0.5130 33 1 5.3447 2.2579 0.5120 34 1 2.6343 -3.4638 -0.9199 35 1 2.5585 -3.4007 0.8577 36 1 3.2990 -5.6375 0.0477 37 1 4.5651 -4.8340 1.0074 38 1 4.9377 -6.9769 -0.7921 39 1 6.4456 -6.1455 -0.3412 40 1 9.2507 -5.4477 -0.5076 41 1 7.2734 -8.1327 -3.4965 42 1 6.1556 -8.6772 -2.1343 43 1 4.2548 -7.3477 -3.1620 44 1 5.3718 -6.8026 -4.5244 45 1 6.4560 -3.7906 -0.1452 46 1 6.5317 -3.8536 -1.9228 47 1 4.5244 -2.4208 -2.0726 48 1 5.7907 -1.6170 -1.1137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602794681.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:54 Heat of formation + Delta-G solvation = 86.875700 kcal Electronic energy + Delta-G solvation = -27377.066031 eV Core-core repulsion = 23853.924937 eV Total energy + Delta-G solvation = -3523.141094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.33505 -40.25639 -38.44002 -36.03785 -35.78445 -34.23685 -33.09074 -31.98986 -30.22474 -29.08870 -28.23914 -27.69933 -25.33988 -24.59707 -23.30203 -22.82603 -22.36771 -20.87061 -20.77081 -18.64764 -18.39858 -17.90188 -16.73628 -16.61914 -16.46611 -16.04840 -15.85560 -15.62226 -15.53043 -15.19029 -14.75506 -14.65193 -14.34207 -14.31300 -14.00104 -13.58680 -13.42686 -13.31790 -13.28356 -12.98287 -12.93766 -12.74697 -12.58149 -12.33989 -12.24981 -11.98930 -11.90578 -11.85972 -11.79417 -11.29911 -11.17454 -10.94480 -10.78827 -10.39843 -10.16378 -9.90204 -9.40540 -8.99306 -8.06324 -6.08517 -0.05065 0.14696 1.39960 1.43706 1.47887 2.11412 2.41275 2.70112 3.02507 3.08180 3.22766 3.47086 3.60484 3.77016 3.96198 4.04231 4.16020 4.23347 4.26333 4.30456 4.35933 4.47436 4.48344 4.61306 4.64873 4.70497 4.71535 4.75982 4.79289 4.82455 4.88679 4.92641 4.95197 4.97194 5.05969 5.09131 5.18613 5.23618 5.37708 5.41541 5.45536 5.59292 5.63929 5.65268 5.81046 5.88658 6.30887 6.39914 6.46405 6.56248 6.88029 7.19316 7.45372 8.95813 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015524 B = 0.004079 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.238902 B = 6862.443410 C = 8127.241559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.182 3.818 3 C -0.257 4.257 4 C 0.181 3.819 5 C -0.101 4.101 6 N -0.571 5.571 7 C 0.485 3.515 8 N -0.475 5.475 9 C 0.094 3.906 10 C 0.052 3.948 11 N -0.524 5.524 12 C 0.107 3.893 13 C 0.035 3.965 14 C -0.487 4.487 15 H 0.049 0.951 16 C 0.043 3.957 17 N -0.896 5.896 18 Si 0.917 3.083 19 H -0.266 1.266 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.193 4.193 23 C -0.180 4.180 24 C 0.055 3.945 25 C 0.088 3.912 26 N -0.575 5.575 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.185 0.815 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.021 0.979 38 H 0.048 0.952 39 H 0.040 0.960 40 H 0.259 0.741 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.004 0.996 46 H 0.122 0.878 47 H 0.040 0.960 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.358 14.756 3.669 21.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.036 3.964 3 C -0.279 4.279 4 C 0.035 3.965 5 C -0.158 4.158 6 N -0.292 5.292 7 C 0.129 3.871 8 N -0.195 5.195 9 C -0.033 4.033 10 C -0.077 4.077 11 N -0.249 5.249 12 C -0.021 4.021 13 C 0.034 3.966 14 C -0.525 4.525 15 H 0.067 0.933 16 C -0.158 4.158 17 N -0.534 5.534 18 Si 0.743 3.257 19 H -0.191 1.191 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.232 4.232 23 C -0.217 4.217 24 C -0.073 4.073 25 C -0.038 4.038 26 N -0.297 5.297 27 H 0.114 0.886 28 H 0.095 0.905 29 H 0.128 0.872 30 H 0.202 0.798 31 H 0.114 0.886 32 H 0.131 0.869 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.040 0.960 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.090 0.910 45 H 0.022 0.978 46 H 0.139 0.861 47 H 0.058 0.942 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.666 13.776 3.790 20.475 hybrid contribution 0.925 0.917 0.085 1.305 sum -13.741 14.693 3.875 20.487 Atomic orbital electron populations 1.20878 0.84951 1.05137 1.04632 1.22358 0.99165 0.87471 0.87390 1.22779 0.94862 1.01516 1.08790 1.22312 0.92966 0.93476 0.87771 1.20883 0.99727 0.90581 1.04598 1.67866 1.42239 0.98687 1.20371 1.21124 0.85732 0.90036 0.90206 1.58663 1.18865 1.00103 1.41895 1.21936 0.92199 0.86776 1.02405 1.22312 0.95955 0.97310 0.92076 1.62057 1.19389 1.02744 1.40674 1.21380 0.94636 0.88561 0.97522 1.18886 0.95471 0.90570 0.91655 1.20556 1.05898 1.22609 1.03396 0.93268 1.25354 0.97321 0.97609 0.95481 1.70031 1.30985 1.39198 1.13147 0.86253 0.79577 0.81561 0.78310 1.19072 1.21174 1.19801 1.22815 0.99275 0.97152 1.03929 1.22770 0.94119 1.06598 0.98198 1.22676 0.94101 0.87854 1.02656 1.22150 0.93988 0.99163 0.88513 1.68253 1.07956 1.32570 1.20943 0.88607 0.90476 0.87158 0.79771 0.88619 0.86871 0.91064 0.92952 0.88922 0.88451 0.96047 0.93322 0.94141 0.93197 0.91773 0.90783 0.89663 0.91005 0.97780 0.86074 0.94205 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.29 10.22 71.23 0.73 -0.56 16 2 C 0.18 4.12 6.82 42.58 0.29 4.41 16 3 C -0.26 -4.92 9.53 22.45 0.21 -4.71 16 4 C 0.18 4.41 6.82 42.58 0.29 4.70 16 5 C -0.10 -1.57 10.22 71.24 0.73 -0.84 16 6 N -0.57 -19.22 9.65 -186.04 -1.80 -21.01 16 7 C 0.49 17.16 7.17 261.48 1.88 19.04 16 8 N -0.48 -18.09 4.77 -708.31 -3.38 -21.47 16 9 C 0.09 3.22 4.76 86.31 0.41 3.63 16 10 C 0.05 1.89 5.57 86.31 0.48 2.37 16 11 N -0.52 -22.50 4.64 -895.71 -4.16 -26.66 16 12 C 0.11 4.92 4.77 86.30 0.41 5.33 16 13 C 0.03 1.69 1.77 -52.93 -0.09 1.60 16 14 C -0.49 -25.65 6.53 25.60 0.17 -25.49 16 15 H 0.05 2.64 7.82 -2.91 -0.02 2.61 16 16 C 0.04 2.28 3.66 84.66 0.31 2.59 16 17 N -0.90 -49.31 11.48 21.45 0.25 -49.06 16 18 Si 0.92 42.24 29.03 68.60 1.99 44.23 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 22 C -0.19 -8.77 9.95 30.62 0.30 -8.46 16 23 C -0.18 -7.69 9.95 30.62 0.30 -7.38 16 24 C 0.05 2.51 4.74 86.31 0.41 2.92 16 25 C 0.09 3.60 5.46 86.31 0.47 4.08 16 26 N -0.57 -17.70 8.63 -186.04 -1.61 -19.31 16 27 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.11 0.74 8.09 -2.39 -0.02 0.73 16 30 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.11 0.97 8.09 -2.39 -0.02 0.95 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.05 1.85 8.03 -2.39 -0.02 1.83 16 35 H 0.09 2.92 7.81 -2.38 -0.02 2.90 16 36 H 0.10 3.08 8.00 -2.38 -0.02 3.06 16 37 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.05 2.05 7.82 -2.39 -0.02 2.04 16 39 H 0.04 2.13 6.19 -2.39 -0.01 2.12 16 40 H 0.26 13.92 8.32 -92.71 -0.77 13.15 16 41 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 42 H 0.07 3.13 8.14 -2.38 -0.02 3.11 16 43 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 44 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 45 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 46 H 0.12 6.11 3.23 -2.39 -0.01 6.10 16 47 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.08 3.27 7.64 -2.39 -0.02 3.26 16 Total: -1.00 -64.72 376.13 -0.47 -65.19 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.93 Total: 24.89 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 7.30 Total: 3.21 kcal Atomic # 7 Polarization: -126.82 SS G_CDS: -10.70 Total: -137.52 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.99 Total: 44.23 kcal Total: -64.72 -0.47 -65.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602794681.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.062 kcal (2) G-P(sol) polarization free energy of solvation -64.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds