Wall clock time and date at job start Tue Mar 31 2020 10:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99803 * 2 1 4 4 H 1.48501 * 109.46901 * 265.72071 * 3 2 1 5 5 H 1.48496 * 109.47488 * 25.71881 * 3 2 1 6 6 H 1.48498 * 109.47185 * 145.72190 * 3 2 1 7 7 C 1.37876 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00144 * 353.13523 * 7 2 1 9 9 C 1.50703 * 120.00109 * 173.41884 * 7 2 1 10 10 C 1.52991 * 115.55477 * 92.16286 * 9 7 2 11 11 N 1.46895 * 109.47251 * 54.97816 * 10 9 7 12 12 C 1.46846 * 110.99963 * 51.94139 * 11 10 9 13 13 C 1.53040 * 109.52216 * 185.84153 * 12 11 10 14 14 C 1.53118 * 109.28016 * 300.81984 * 13 12 11 15 15 C 1.53123 * 109.16067 * 57.65455 * 14 13 12 16 16 H 1.09003 * 109.50196 * 62.28851 * 15 14 13 17 17 C 1.50694 * 109.50676 * 182.40540 * 15 14 13 18 18 N 1.30716 * 125.52567 * 59.49390 * 17 15 14 19 19 N 1.40440 * 106.79448 * 179.86472 * 18 17 15 20 20 H 0.97002 * 126.82614 * 180.16547 * 19 18 17 21 21 C 1.34429 * 106.35189 * 0.39696 * 19 18 17 22 22 C 1.50700 * 125.96223 * 179.77499 * 21 19 18 23 23 C 1.53003 * 117.49622 * 33.60689 * 22 21 19 24 24 C 1.52994 * 59.99859 * 252.50644 * 23 22 21 25 25 N 1.30836 * 108.07960 * 359.76382 * 21 19 18 26 26 C 1.46845 * 111.00103 * 176.15277 * 11 10 9 27 27 C 1.53006 * 117.49256 * 306.45448 * 9 7 2 28 28 C 1.52997 * 59.99950 * 252.51111 * 27 9 7 29 29 H 0.96991 * 120.00208 * 5.01662 * 1 2 3 30 30 H 1.09000 * 109.47579 * 174.97878 * 10 9 7 31 31 H 1.09006 * 109.47327 * 294.97955 * 10 9 7 32 32 H 1.08999 * 109.46270 * 305.85191 * 12 11 10 33 33 H 1.08996 * 109.46265 * 65.82309 * 12 11 10 34 34 H 1.09000 * 109.50361 * 180.88118 * 13 12 11 35 35 H 1.09001 * 109.53841 * 60.78574 * 13 12 11 36 36 H 1.08996 * 109.52445 * 297.75239 * 14 13 12 37 37 H 1.08997 * 109.57638 * 177.59167 * 14 13 12 38 38 H 1.09007 * 115.55393 * 179.30926 * 22 21 19 39 39 H 1.09001 * 117.49957 * 359.97438 * 23 22 21 40 40 H 1.09002 * 117.49843 * 145.01571 * 23 22 21 41 41 H 1.09010 * 117.50107 * 252.50855 * 24 23 22 42 42 H 1.09005 * 117.49753 * 107.48908 * 24 23 22 43 43 H 1.08993 * 109.46370 * 294.17673 * 26 11 10 44 44 H 1.09005 * 109.46578 * 54.14661 * 26 11 10 45 45 H 1.09003 * 117.49941 * 0.02562 * 27 9 7 46 46 H 1.08995 * 117.49576 * 145.02224 * 27 9 7 47 47 H 1.08995 * 117.50296 * 252.50825 * 28 27 9 48 48 H 1.08998 * 117.51764 * 107.48183 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5870 1.9941 -1.3962 5 1 1.4043 2.6771 0.6075 6 1 3.4985 1.4680 0.7885 7 6 2.0046 -1.1940 -0.0005 8 1 1.4704 -2.1261 0.1108 9 6 3.5042 -1.1983 -0.1501 10 6 4.2979 -1.1737 1.1576 11 7 3.8715 -2.2912 2.0103 12 6 3.9220 -3.5622 1.2765 13 6 3.3357 -4.6777 2.1448 14 6 4.1407 -4.7840 3.4429 15 6 4.1123 -3.4335 4.1639 16 1 3.0850 -3.1845 4.4299 17 6 4.9513 -3.5123 5.4132 18 7 6.2263 -3.7975 5.4552 19 7 6.6062 -3.7599 6.8067 20 1 7.4917 -3.9253 7.1666 21 6 5.4978 -3.4540 7.5031 22 6 5.4060 -3.3047 8.9999 23 6 6.6267 -2.7404 9.7296 24 6 6.2782 -4.2247 9.8564 25 7 4.5125 -3.3083 6.6547 26 6 4.6761 -2.3540 3.2370 27 6 4.0963 -0.4572 -1.3506 28 6 4.0951 -1.9869 -1.3205 29 1 -0.4850 0.8367 -0.0734 30 1 5.3615 -1.2689 0.9389 31 1 4.1163 -0.2318 1.6753 32 1 3.3422 -3.4744 0.3577 33 1 4.9573 -3.7990 1.0312 34 1 3.3877 -5.6238 1.6059 35 1 2.2960 -4.4491 2.3790 36 1 5.1716 -5.0517 3.2114 37 1 3.7011 -5.5483 4.0837 38 1 4.4216 -3.0408 9.3866 39 1 7.4962 -2.4776 9.1272 40 1 6.4455 -2.1050 10.5966 41 1 5.8677 -4.5660 10.8069 42 1 6.9183 -4.9381 9.3373 43 1 5.7079 -2.5964 2.9826 44 1 4.6441 -1.3886 3.7423 45 1 3.4013 0.0337 -2.0319 46 1 5.0516 0.0481 -1.2088 47 1 5.0495 -2.4879 -1.1590 48 1 3.3993 -2.5030 -1.9820 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602796746.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:09 Heat of formation + Delta-G solvation = 140.294460 kcal Electronic energy + Delta-G solvation = -26708.359679 eV Core-core repulsion = 23187.534997 eV Total energy + Delta-G solvation = -3520.824683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.35346 -38.90613 -37.73723 -36.58180 -33.34420 -32.30959 -31.87668 -31.52225 -29.57945 -26.62073 -25.16214 -24.81971 -23.72704 -23.01971 -22.43345 -21.55145 -20.79457 -20.41422 -19.08233 -18.68283 -18.10231 -16.37257 -16.28588 -15.62261 -15.25920 -14.89623 -14.81991 -14.27144 -14.23703 -13.90979 -13.51462 -13.21632 -13.16562 -12.66149 -12.62221 -12.22064 -12.14055 -12.04028 -12.01269 -11.62513 -11.48710 -11.14544 -11.07221 -10.98608 -10.57678 -10.49164 -10.42135 -10.23556 -10.23089 -10.05855 -9.91254 -9.73523 -9.51854 -9.35536 -8.87722 -8.44099 -8.34402 -7.46668 -5.92554 -3.91781 1.37025 2.41850 2.67216 3.39481 3.39622 3.48815 3.50346 3.52204 4.15013 4.24762 4.32245 4.55294 4.56711 4.77511 4.77809 4.99664 5.04842 5.14893 5.22763 5.26205 5.34763 5.41985 5.43577 5.50288 5.68643 5.71923 5.87718 5.92853 6.02282 6.05964 6.13573 6.16834 6.19704 6.23618 6.26189 6.30060 6.39426 6.49858 6.51311 6.54991 6.75990 6.76864 6.85876 6.91291 7.14637 7.23395 7.79715 7.90484 7.96950 8.03193 8.68310 9.11421 9.70525 11.19115 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018763 B = 0.003088 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.968180 B = 9064.920433 C = 9597.186501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.076 3.924 3 Si 0.880 3.120 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.459 4.459 8 H 0.080 0.920 9 C 0.008 3.992 10 C 0.095 3.905 11 N -0.509 5.509 12 C 0.057 3.943 13 C -0.115 4.115 14 C -0.106 4.106 15 C 0.008 3.992 16 H 0.109 0.891 17 C 0.249 3.751 18 N -0.310 5.310 19 N -0.488 5.488 20 H 0.435 0.565 21 C 0.310 3.690 22 C -0.083 4.083 23 C -0.165 4.165 24 C -0.165 4.165 25 N -0.528 5.528 26 C 0.069 3.931 27 C -0.203 4.203 28 C -0.185 4.185 29 H 0.262 0.738 30 H 0.005 0.995 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.016 0.984 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.143 0.857 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.096 0.904 43 H 0.030 0.970 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.643 -8.786 17.143 24.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.125 4.125 3 Si 0.709 3.291 4 H -0.207 1.207 5 H -0.225 1.225 6 H -0.189 1.189 7 C -0.497 4.497 8 H 0.098 0.902 9 C 0.007 3.993 10 C -0.032 4.032 11 N -0.232 5.232 12 C -0.070 4.070 13 C -0.153 4.153 14 C -0.144 4.144 15 C -0.014 4.014 16 H 0.128 0.872 17 C -0.034 4.034 18 N -0.138 5.138 19 N -0.206 5.206 20 H 0.280 0.720 21 C 0.032 3.968 22 C -0.104 4.104 23 C -0.203 4.203 24 C -0.203 4.203 25 N -0.256 5.256 26 C -0.061 4.061 27 C -0.241 4.241 28 C -0.223 4.223 29 H 0.072 0.928 30 H 0.023 0.977 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.035 0.965 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.161 0.839 39 H 0.115 0.885 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.115 0.885 43 H 0.048 0.952 44 H 0.087 0.913 45 H 0.108 0.892 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.021 -8.642 16.735 23.480 hybrid contribution 2.003 0.846 0.234 2.187 sum 16.024 -7.795 16.969 24.607 Atomic orbital electron populations 1.69869 1.06254 1.26957 1.51032 1.24913 0.94491 0.98656 0.94466 0.86898 0.80177 0.83849 0.78182 1.20712 1.22495 1.18924 1.20121 0.86273 0.94494 1.48769 0.90176 1.19428 0.95973 0.98865 0.85071 1.21860 0.93593 0.93368 0.94397 1.61638 1.53060 1.03542 1.04965 1.22172 0.98252 0.88468 0.98157 1.21595 1.00791 0.98078 0.94843 1.21586 1.00789 0.95033 0.97040 1.19649 0.98277 0.96888 0.86536 0.87245 1.24345 0.89509 0.95508 0.94025 1.78049 1.15272 1.27054 0.93383 1.47930 1.11704 1.55651 1.05272 0.72022 1.23217 0.83230 0.95508 0.94826 1.20415 0.99165 1.07041 0.83786 1.23144 0.97559 0.96814 1.02813 1.23143 1.02116 0.93345 1.01715 1.70366 1.30323 1.25156 0.99722 1.21959 0.94368 0.97733 0.91996 1.22996 1.01148 0.94647 1.05334 1.22904 1.00740 0.93121 1.05512 0.92838 0.97657 0.91178 0.88220 0.96548 0.91780 0.90388 0.92028 0.92160 0.83879 0.88531 0.86929 0.86960 0.88547 0.95234 0.91275 0.89216 0.91299 0.91412 0.89466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.95 55.43 0.77 -26.89 16 2 C 0.08 2.17 5.46 -17.82 -0.10 2.08 16 3 Si 0.88 22.16 24.93 -169.99 -4.24 17.92 16 4 H -0.28 -6.89 6.86 56.52 0.39 -6.51 16 5 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 6 H -0.26 -6.38 5.78 56.52 0.33 -6.05 16 7 C -0.46 -12.58 8.71 -34.44 -0.30 -12.88 16 8 H 0.08 2.40 7.90 -52.49 -0.41 1.99 16 9 C 0.01 0.18 0.13 -155.66 -0.02 0.16 16 10 C 0.10 2.03 4.92 -3.83 -0.02 2.02 16 11 N -0.51 -10.12 4.46 -234.68 -1.05 -11.16 16 12 C 0.06 1.03 4.73 -3.83 -0.02 1.01 16 13 C -0.12 -1.79 6.09 -26.65 -0.16 -1.95 16 14 C -0.11 -1.55 5.27 -26.61 -0.14 -1.69 16 15 C 0.01 0.13 2.82 -91.69 -0.26 -0.13 16 16 H 0.11 1.88 8.14 -51.93 -0.42 1.46 16 17 C 0.25 3.90 6.65 -156.86 -1.04 2.86 16 18 N -0.31 -4.53 12.80 32.42 0.41 -4.12 16 19 N -0.49 -5.30 7.39 32.62 0.24 -5.06 16 20 H 0.43 3.09 8.96 -182.34 -1.63 1.45 16 21 C 0.31 3.57 7.67 -155.69 -1.19 2.37 16 22 C -0.08 -0.61 6.33 -91.77 -0.58 -1.19 16 23 C -0.16 -0.77 10.21 -26.73 -0.27 -1.05 16 24 C -0.16 -0.74 10.22 -26.74 -0.27 -1.02 16 25 N -0.53 -8.02 11.19 -8.16 -0.09 -8.11 16 26 C 0.07 1.21 4.73 -3.83 -0.02 1.19 16 27 C -0.20 -4.39 7.61 -26.73 -0.20 -4.59 16 28 C -0.19 -3.75 8.08 -26.73 -0.22 -3.97 16 29 H 0.26 7.61 8.32 -40.82 -0.34 7.27 16 30 H 0.01 0.11 8.09 -51.93 -0.42 -0.31 16 31 H 0.07 1.59 6.55 -51.93 -0.34 1.25 16 32 H 0.10 1.99 5.16 -51.93 -0.27 1.73 16 33 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.14 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.11 0.36 8.14 -51.92 -0.42 -0.07 16 42 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 1.25 8.12 -51.93 -0.42 0.83 16 45 H 0.09 2.05 6.88 -51.93 -0.36 1.69 16 46 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 47 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 48 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 LS Contribution 376.19 15.07 5.67 5.67 Total: -1.00 -32.71 376.19 -12.52 -45.23 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -9.42 Total: 3.29 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -4.82 Total: -16.77 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.29 Total: -55.34 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.24 Total: 17.92 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.71 -12.52 -45.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602796746.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.525 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds