Wall clock time and date at job start Tue Mar 31 2020 10:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99803 * 2 1 4 4 H 1.48501 * 109.46901 * 265.72071 * 3 2 1 5 5 H 1.48496 * 109.47488 * 25.71881 * 3 2 1 6 6 H 1.48498 * 109.47185 * 145.72190 * 3 2 1 7 7 C 1.37876 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00144 * 353.13523 * 7 2 1 9 9 C 1.50703 * 120.00109 * 173.41884 * 7 2 1 10 10 C 1.52991 * 115.55477 * 92.16286 * 9 7 2 11 11 N 1.46895 * 109.47251 * 54.97816 * 10 9 7 12 12 C 1.46846 * 110.99963 * 51.94139 * 11 10 9 13 13 C 1.53040 * 109.52216 * 185.84153 * 12 11 10 14 14 C 1.53118 * 109.28016 * 300.81984 * 13 12 11 15 15 C 1.53123 * 109.16067 * 57.65455 * 14 13 12 16 16 H 1.09003 * 109.50196 * 62.28851 * 15 14 13 17 17 C 1.50694 * 109.50676 * 182.40540 * 15 14 13 18 18 N 1.30716 * 125.52567 * 59.49390 * 17 15 14 19 19 N 1.40440 * 106.79448 * 179.86472 * 18 17 15 20 20 H 0.97002 * 126.82614 * 180.16547 * 19 18 17 21 21 C 1.34429 * 106.35189 * 0.39696 * 19 18 17 22 22 C 1.50700 * 125.96223 * 179.77499 * 21 19 18 23 23 C 1.53003 * 117.49622 * 33.60689 * 22 21 19 24 24 C 1.52994 * 59.99859 * 252.50644 * 23 22 21 25 25 N 1.30836 * 108.07960 * 359.76382 * 21 19 18 26 26 C 1.46845 * 111.00103 * 176.15277 * 11 10 9 27 27 C 1.53006 * 117.49256 * 306.45448 * 9 7 2 28 28 C 1.52997 * 59.99950 * 252.51111 * 27 9 7 29 29 H 0.96991 * 120.00208 * 5.01662 * 1 2 3 30 30 H 1.09000 * 109.47579 * 174.97878 * 10 9 7 31 31 H 1.09006 * 109.47327 * 294.97955 * 10 9 7 32 32 H 1.08999 * 109.46270 * 305.85191 * 12 11 10 33 33 H 1.08996 * 109.46265 * 65.82309 * 12 11 10 34 34 H 1.09000 * 109.50361 * 180.88118 * 13 12 11 35 35 H 1.09001 * 109.53841 * 60.78574 * 13 12 11 36 36 H 1.08996 * 109.52445 * 297.75239 * 14 13 12 37 37 H 1.08997 * 109.57638 * 177.59167 * 14 13 12 38 38 H 1.09007 * 115.55393 * 179.30926 * 22 21 19 39 39 H 1.09001 * 117.49957 * 359.97438 * 23 22 21 40 40 H 1.09002 * 117.49843 * 145.01571 * 23 22 21 41 41 H 1.09010 * 117.50107 * 252.50855 * 24 23 22 42 42 H 1.09005 * 117.49753 * 107.48908 * 24 23 22 43 43 H 1.08993 * 109.46370 * 294.17673 * 26 11 10 44 44 H 1.09005 * 109.46578 * 54.14661 * 26 11 10 45 45 H 1.09003 * 117.49941 * 0.02562 * 27 9 7 46 46 H 1.08995 * 117.49576 * 145.02224 * 27 9 7 47 47 H 1.08995 * 117.50296 * 252.50825 * 28 27 9 48 48 H 1.08998 * 117.51764 * 107.48183 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5870 1.9941 -1.3962 5 1 1.4043 2.6771 0.6075 6 1 3.4985 1.4680 0.7885 7 6 2.0046 -1.1940 -0.0005 8 1 1.4704 -2.1261 0.1108 9 6 3.5042 -1.1983 -0.1501 10 6 4.2979 -1.1737 1.1576 11 7 3.8715 -2.2912 2.0103 12 6 3.9220 -3.5622 1.2765 13 6 3.3357 -4.6777 2.1448 14 6 4.1407 -4.7840 3.4429 15 6 4.1123 -3.4335 4.1639 16 1 3.0850 -3.1845 4.4299 17 6 4.9513 -3.5123 5.4132 18 7 6.2263 -3.7975 5.4552 19 7 6.6062 -3.7599 6.8067 20 1 7.4917 -3.9253 7.1666 21 6 5.4978 -3.4540 7.5031 22 6 5.4060 -3.3047 8.9999 23 6 6.6267 -2.7404 9.7296 24 6 6.2782 -4.2247 9.8564 25 7 4.5125 -3.3083 6.6547 26 6 4.6761 -2.3540 3.2370 27 6 4.0963 -0.4572 -1.3506 28 6 4.0951 -1.9869 -1.3205 29 1 -0.4850 0.8367 -0.0734 30 1 5.3615 -1.2689 0.9389 31 1 4.1163 -0.2318 1.6753 32 1 3.3422 -3.4744 0.3577 33 1 4.9573 -3.7990 1.0312 34 1 3.3877 -5.6238 1.6059 35 1 2.2960 -4.4491 2.3790 36 1 5.1716 -5.0517 3.2114 37 1 3.7011 -5.5483 4.0837 38 1 4.4216 -3.0408 9.3866 39 1 7.4962 -2.4776 9.1272 40 1 6.4455 -2.1050 10.5966 41 1 5.8677 -4.5660 10.8069 42 1 6.9183 -4.9381 9.3373 43 1 5.7079 -2.5964 2.9826 44 1 4.6441 -1.3886 3.7423 45 1 3.4013 0.0337 -2.0319 46 1 5.0516 0.0481 -1.2088 47 1 5.0495 -2.4879 -1.1590 48 1 3.3993 -2.5030 -1.9820 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602796746.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:08 Heat of formation + Delta-G solvation = 119.551291 kcal Electronic energy + Delta-G solvation = -26709.259170 eV Core-core repulsion = 23187.534997 eV Total energy + Delta-G solvation = -3521.724174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.33821 -40.37347 -38.49201 -37.97261 -34.65393 -34.04682 -33.45074 -32.67776 -30.73162 -28.34470 -27.10135 -25.66265 -24.93799 -23.86857 -23.34792 -23.19262 -21.72463 -21.57971 -20.64361 -20.25054 -18.95185 -18.21167 -16.97163 -16.94239 -16.68107 -16.52054 -15.87073 -15.64938 -15.43150 -15.28322 -15.07645 -14.69420 -14.56950 -14.14029 -13.89993 -13.76250 -13.55300 -13.10489 -12.98398 -12.84498 -12.52527 -12.44504 -12.26633 -12.15959 -12.09210 -11.96576 -11.73400 -11.62703 -11.53726 -11.48407 -11.31393 -11.12490 -11.02667 -10.74522 -10.52405 -10.30795 -10.17487 -8.97655 -8.14767 -6.16400 0.44553 1.37965 1.42384 1.52129 1.58221 1.66899 2.45114 2.63251 2.91093 3.02641 3.17334 3.36836 3.47325 3.67979 3.75699 3.84551 3.94762 3.98047 4.11830 4.19054 4.27256 4.34842 4.35829 4.44352 4.48187 4.56007 4.61874 4.69544 4.73073 4.77857 4.83011 4.87173 4.93252 4.99671 5.03585 5.04986 5.09180 5.12404 5.14477 5.18632 5.29955 5.34990 5.44416 5.48625 5.54828 5.82377 6.09735 6.30902 6.42436 6.51335 6.88844 7.03332 7.48902 9.00757 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018763 B = 0.003088 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.968180 B = 9064.920433 C = 9597.186501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.017 3.983 3 Si 0.935 3.065 4 H -0.267 1.267 5 H -0.306 1.306 6 H -0.245 1.245 7 C -0.446 4.446 8 H 0.037 0.963 9 C -0.016 4.016 10 C 0.103 3.897 11 N -0.533 5.533 12 C 0.061 3.939 13 C -0.110 4.110 14 C -0.093 4.093 15 C 0.012 3.988 16 H 0.088 0.912 17 C 0.236 3.764 18 N -0.327 5.327 19 N -0.474 5.474 20 H 0.452 0.548 21 C 0.320 3.680 22 C -0.113 4.113 23 C -0.150 4.150 24 C -0.146 4.146 25 N -0.571 5.571 26 C 0.079 3.921 27 C -0.201 4.201 28 C -0.161 4.161 29 H 0.260 0.740 30 H 0.028 0.972 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.142 0.858 39 H 0.101 0.899 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.036 0.964 44 H 0.056 0.944 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.258 -9.371 18.557 27.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.179 4.179 3 Si 0.762 3.238 4 H -0.192 1.192 5 H -0.234 1.234 6 H -0.169 1.169 7 C -0.484 4.484 8 H 0.055 0.945 9 C -0.018 4.018 10 C -0.025 4.025 11 N -0.257 5.257 12 C -0.067 4.067 13 C -0.148 4.148 14 C -0.132 4.132 15 C -0.009 4.009 16 H 0.106 0.894 17 C -0.047 4.047 18 N -0.156 5.156 19 N -0.193 5.193 20 H 0.301 0.699 21 C 0.043 3.957 22 C -0.134 4.134 23 C -0.188 4.188 24 C -0.184 4.184 25 N -0.300 5.300 26 C -0.050 4.050 27 C -0.239 4.239 28 C -0.198 4.198 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.160 0.840 39 H 0.119 0.881 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.121 0.879 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.092 0.908 46 H 0.115 0.885 47 H 0.117 0.883 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.694 -9.250 18.159 26.988 hybrid contribution 0.876 0.920 -0.116 1.276 sum 18.569 -8.330 18.042 27.198 Atomic orbital electron populations 1.70024 1.08138 1.27649 1.53844 1.25692 0.95086 1.02300 0.94813 0.85984 0.79425 0.79401 0.79016 1.19202 1.23414 1.16920 1.20249 0.88978 0.92565 1.46652 0.94458 1.19287 0.93495 1.02100 0.86871 1.21659 0.94418 0.93200 0.93235 1.61579 1.54278 1.04097 1.05786 1.22115 0.98761 0.88313 0.97485 1.21556 0.99504 0.98364 0.95374 1.21484 1.00954 0.94447 0.96318 1.19477 0.97218 0.97200 0.87017 0.89404 1.24118 0.89894 0.96626 0.94025 1.77920 1.14700 1.27511 0.95463 1.47792 1.12527 1.54970 1.04055 0.69942 1.23852 0.82389 0.93289 0.96133 1.20602 1.00544 1.10746 0.81521 1.23287 0.95749 0.97361 1.02428 1.23287 1.00343 0.93351 1.01388 1.70323 1.32334 1.27159 1.00164 1.21855 0.94356 0.97713 0.91088 1.23041 1.01759 0.95633 1.03430 1.22886 1.01451 0.92639 1.02801 0.93077 0.95389 0.93074 0.90599 0.94985 0.89294 0.92508 0.91289 0.91120 0.84044 0.88060 0.85321 0.85195 0.87918 0.94542 0.92500 0.90796 0.88506 0.88334 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.11 13.95 21.45 0.30 -60.81 16 2 C 0.02 0.99 5.46 84.65 0.46 1.46 16 3 Si 0.94 46.10 24.93 68.60 1.71 47.81 16 4 H -0.27 -12.44 6.86 99.48 0.68 -11.76 16 5 H -0.31 -15.43 7.11 99.48 0.71 -14.72 16 6 H -0.25 -11.26 5.78 99.48 0.58 -10.68 16 7 C -0.45 -25.22 8.71 25.60 0.22 -25.00 16 8 H 0.04 2.37 7.90 -2.91 -0.02 2.35 16 9 C -0.02 -0.74 0.13 -52.93 -0.01 -0.75 16 10 C 0.10 4.26 4.92 86.30 0.42 4.68 16 11 N -0.53 -21.20 4.46 -896.38 -4.00 -25.20 16 12 C 0.06 2.15 4.73 86.33 0.41 2.56 16 13 C -0.11 -3.38 6.09 30.65 0.19 -3.19 16 14 C -0.09 -2.65 5.27 30.67 0.16 -2.49 16 15 C 0.01 0.40 2.82 -11.49 -0.03 0.37 16 16 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 17 C 0.24 7.35 6.65 138.63 0.92 8.27 16 18 N -0.33 -9.17 12.80 -51.34 -0.66 -9.82 16 19 N -0.47 -9.47 7.39 -50.70 -0.37 -9.85 16 20 H 0.45 5.30 8.96 -213.10 -1.91 3.39 16 21 C 0.32 7.01 7.67 138.22 1.06 8.07 16 22 C -0.11 -1.45 6.33 -11.54 -0.07 -1.52 16 23 C -0.15 -0.95 10.21 30.59 0.31 -0.64 16 24 C -0.15 -0.85 10.22 30.59 0.31 -0.54 16 25 N -0.57 -17.36 11.19 -179.73 -2.01 -19.37 16 26 C 0.08 2.76 4.73 86.33 0.41 3.17 16 27 C -0.20 -8.19 7.61 30.60 0.23 -7.95 16 28 C -0.16 -6.17 8.08 30.59 0.25 -5.92 16 29 H 0.26 15.81 8.32 -92.71 -0.77 15.04 16 30 H 0.03 1.04 8.09 -2.39 -0.02 1.02 16 31 H 0.05 2.28 6.55 -2.38 -0.02 2.27 16 32 H 0.08 3.04 5.16 -2.39 -0.01 3.03 16 33 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.14 1.84 8.14 -2.38 -0.02 1.83 16 39 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.13 0.35 8.14 -2.38 -0.02 0.33 16 42 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 43 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.06 2.08 8.12 -2.38 -0.02 2.06 16 45 H 0.07 3.25 6.88 -2.39 -0.02 3.24 16 46 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 47 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 48 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -73.91 376.19 -0.90 -74.80 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -1.11 Total: 21.86 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: 5.25 Total: -19.42 kcal Atomic # 7 Polarization: -118.31 SS G_CDS: -6.74 Total: -125.05 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.71 Total: 47.81 kcal Total: -73.91 -0.90 -74.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602796746.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.355 kcal (2) G-P(sol) polarization free energy of solvation -73.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds