Wall clock time and date at job start Tue Mar 31 2020 10:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48501 * 109.47077 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47011 * 119.99271 * 3 2 1 6 6 H 1.48494 * 109.47168 * 239.99720 * 3 2 1 7 7 C 1.37871 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99691 * 186.71792 * 7 2 1 9 9 C 1.50701 * 120.00318 * 6.71891 * 7 2 1 10 10 C 1.52999 * 115.54705 * 53.80393 * 9 7 2 11 11 N 1.46901 * 109.46943 * 64.36178 * 10 9 7 12 12 C 1.46847 * 110.99856 * 284.71059 * 11 10 9 13 13 C 1.53040 * 109.52188 * 174.16025 * 12 11 10 14 14 C 1.53119 * 109.27754 * 59.18263 * 13 12 11 15 15 C 1.53125 * 109.16171 * 302.34399 * 14 13 12 16 16 H 1.09003 * 109.53224 * 297.69622 * 15 14 13 17 17 C 1.50699 * 109.50547 * 177.59527 * 15 14 13 18 18 N 1.30706 * 125.52924 * 299.89219 * 17 15 14 19 19 N 1.40442 * 106.79406 * 179.86211 * 18 17 15 20 20 H 0.96997 * 126.82021 * 180.16321 * 19 18 17 21 21 C 1.34427 * 106.35206 * 0.39620 * 19 18 17 22 22 C 1.50703 * 125.95869 * 179.78734 * 21 19 18 23 23 C 1.52998 * 117.50015 * 33.71488 * 22 21 19 24 24 C 1.52998 * 117.49834 * 325.05334 * 22 21 19 25 25 N 1.30832 * 108.07675 * 359.75868 * 21 19 18 26 26 C 1.46843 * 111.00126 * 160.50187 * 11 10 9 27 27 C 1.53000 * 117.49937 * 268.13770 * 9 7 2 28 28 C 1.53000 * 117.50057 * 199.47489 * 9 7 2 29 29 H 0.96998 * 120.00614 * 355.05378 * 1 2 3 30 30 H 1.08995 * 109.47195 * 184.35580 * 10 9 7 31 31 H 1.08997 * 109.47521 * 304.36238 * 10 9 7 32 32 H 1.08998 * 109.46157 * 294.17651 * 12 11 10 33 33 H 1.09000 * 109.46377 * 54.14799 * 12 11 10 34 34 H 1.08999 * 109.50488 * 299.24014 * 13 12 11 35 35 H 1.09000 * 109.53777 * 179.13630 * 13 12 11 36 36 H 1.09004 * 109.52492 * 182.44244 * 14 13 12 37 37 H 1.09002 * 109.52428 * 62.24702 * 14 13 12 38 38 H 1.09001 * 115.54784 * 179.39359 * 22 21 19 39 39 H 1.08994 * 117.50456 * 0.02562 * 23 22 21 40 40 H 1.09007 * 117.49132 * 145.02442 * 23 22 21 41 41 H 1.08995 * 117.50463 * 214.98209 * 24 22 21 42 42 H 1.09004 * 117.49737 * 359.97438 * 24 22 21 43 43 H 1.09006 * 109.46259 * 305.85684 * 26 11 10 44 44 H 1.09001 * 109.46145 * 65.82110 * 26 11 10 45 45 H 1.09003 * 117.49512 * 359.97438 * 27 9 7 46 46 H 1.08995 * 117.50071 * 145.02064 * 27 9 7 47 47 H 1.08997 * 117.49943 * 214.97652 * 28 9 7 48 48 H 1.09008 * 117.49712 * 0.02562 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1026 1.6965 1.2126 6 1 3.1028 1.6965 -1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0790 -1.1971 0.1100 9 6 1.2588 -2.4947 -0.1516 10 6 0.3416 -2.5906 -1.3724 11 7 1.1495 -2.5286 -2.5978 12 6 1.6070 -1.1577 -2.8577 13 6 2.5612 -1.1551 -4.0542 14 6 1.8344 -1.7118 -5.2815 15 6 1.3260 -3.1217 -4.9680 16 1 2.1722 -3.7762 -4.7588 17 6 0.5582 -3.6543 -6.1504 18 7 -0.5152 -3.1143 -6.6647 19 7 -0.8998 -3.9253 -7.7448 20 1 -1.6597 -3.7894 -8.3321 21 6 -0.0086 -4.9302 -7.7996 22 6 -0.0100 -6.0608 -8.7961 23 6 -0.5044 -5.7547 -10.2112 24 6 -1.3678 -6.5899 -9.2623 25 7 0.8604 -4.7551 -6.8374 26 6 0.4077 -3.0673 -3.7450 27 6 0.8099 -3.2054 1.1268 28 6 1.9677 -3.7726 0.3016 29 1 -0.4851 0.8368 0.0724 30 1 -0.2035 -3.5340 -1.3441 31 1 -0.3659 -1.7616 -1.3614 32 1 0.7480 -0.5236 -3.0768 33 1 2.1258 -0.7751 -1.9787 34 1 3.4272 -1.7781 -3.8304 35 1 2.8890 -0.1355 -4.2569 36 1 2.5231 -1.7523 -6.1255 37 1 0.9910 -1.0671 -5.5290 38 1 0.8016 -6.7809 -8.6912 39 1 -0.8284 -4.7356 -10.4218 40 1 -0.0183 -6.2737 -11.0374 41 1 -1.4494 -7.6578 -9.4647 42 1 -2.2601 -6.1205 -8.8481 43 1 0.0553 -4.0718 -3.5104 44 1 -0.4457 -2.4242 -3.9599 45 1 1.0543 -2.7322 2.0779 46 1 -0.1386 -3.7416 1.0980 47 1 1.7803 -4.6818 -0.2697 48 1 2.9733 -3.6724 0.7102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602796748.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:11 Heat of formation + Delta-G solvation = 120.788650 kcal Electronic energy + Delta-G solvation = -26882.980528 eV Core-core repulsion = 23361.310010 eV Total energy + Delta-G solvation = -3521.670518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.32852 -40.12661 -38.34904 -37.83691 -34.57400 -34.11074 -33.39522 -32.61143 -30.70907 -27.85507 -27.33394 -25.61398 -24.66095 -23.77465 -23.34483 -22.80634 -21.67319 -21.56257 -20.73121 -20.25017 -18.93559 -18.00432 -16.94794 -16.68703 -16.64828 -16.50114 -15.80185 -15.76216 -15.37482 -15.30790 -14.87443 -14.53514 -14.26176 -14.09969 -13.83037 -13.46217 -13.28256 -12.92593 -12.83906 -12.73889 -12.56711 -12.50163 -12.31446 -12.21132 -12.10186 -11.96844 -11.69740 -11.59695 -11.50484 -11.33944 -11.22971 -11.11760 -10.97403 -10.70359 -10.38625 -10.30792 -9.89116 -8.95474 -8.02328 -6.05093 0.46338 1.43490 1.46076 1.51297 1.59377 1.67496 2.44628 2.66828 2.92001 3.10451 3.24878 3.47520 3.67380 3.74237 3.84925 3.88534 3.95213 4.03375 4.19800 4.27634 4.33812 4.40750 4.53022 4.62254 4.64066 4.70564 4.79614 4.80673 4.82725 4.94278 4.98356 5.01714 5.03645 5.07239 5.08557 5.15157 5.16497 5.21547 5.24904 5.30736 5.35164 5.54293 5.61639 5.65149 5.68799 5.93108 6.10106 6.45807 6.50358 6.59945 6.91508 7.03348 7.49514 9.00578 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021774 B = 0.003101 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.619434 B = 9027.306170 C = 9658.366324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.038 3.962 3 Si 0.926 3.074 4 H -0.290 1.290 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.484 4.484 8 H 0.053 0.947 9 C 0.038 3.962 10 C 0.107 3.893 11 N -0.518 5.518 12 C 0.045 3.955 13 C -0.110 4.110 14 C -0.096 4.096 15 C 0.019 3.981 16 H 0.103 0.897 17 C 0.237 3.763 18 N -0.336 5.336 19 N -0.476 5.476 20 H 0.451 0.549 21 C 0.320 3.680 22 C -0.110 4.110 23 C -0.147 4.147 24 C -0.151 4.151 25 N -0.564 5.564 26 C 0.076 3.924 27 C -0.195 4.195 28 C -0.177 4.177 29 H 0.258 0.742 30 H 0.036 0.964 31 H 0.038 0.962 32 H -0.008 1.008 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.146 0.854 39 H 0.100 0.900 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.098 0.902 43 H 0.062 0.938 44 H 0.012 0.988 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.780 -10.655 -21.406 23.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.163 4.163 3 Si 0.752 3.248 4 H -0.216 1.216 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.522 4.522 8 H 0.071 0.929 9 C 0.037 3.963 10 C -0.021 4.021 11 N -0.242 5.242 12 C -0.083 4.083 13 C -0.147 4.147 14 C -0.135 4.135 15 C -0.003 4.003 16 H 0.121 0.879 17 C -0.047 4.047 18 N -0.165 5.165 19 N -0.195 5.195 20 H 0.299 0.701 21 C 0.042 3.958 22 C -0.131 4.131 23 C -0.185 4.185 24 C -0.189 4.189 25 N -0.292 5.292 26 C -0.053 4.053 27 C -0.234 4.234 28 C -0.214 4.214 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.010 0.990 33 H 0.126 0.874 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.164 0.836 39 H 0.118 0.882 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.116 0.884 43 H 0.080 0.920 44 H 0.031 0.969 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.100 0.900 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.556 -10.348 -21.011 23.473 hybrid contribution -1.219 1.559 0.051 1.980 sum -2.775 -8.789 -20.960 22.897 Atomic orbital electron populations 1.70013 1.06977 1.27041 1.50137 1.25457 0.95249 1.00999 0.94570 0.86105 0.78967 0.80340 0.79389 1.21565 1.19943 1.18475 1.20541 0.92815 0.90030 1.48789 0.92861 1.18855 0.96610 0.90605 0.90198 1.21372 0.94056 0.97740 0.88941 1.61776 1.39140 1.21814 1.01454 1.22578 0.96912 0.88090 1.00695 1.21597 0.98566 1.01284 0.93302 1.21502 0.99867 0.93716 0.98398 1.19453 0.96366 0.97620 0.86829 0.87877 1.24174 0.92347 0.90629 0.97506 1.77989 1.17428 1.18404 1.02632 1.47806 1.26133 1.19671 1.25907 0.70091 1.23927 0.86104 0.91028 0.94696 1.20614 1.03143 0.95957 0.93345 1.23297 1.01841 1.02199 0.91189 1.23296 0.91676 1.02689 1.01271 1.70304 1.29678 1.19775 1.09488 1.21895 0.93901 0.98809 0.90714 1.22814 0.97110 1.06142 0.97314 1.22749 0.95658 0.98397 1.04610 0.93275 0.94530 0.94388 0.98985 0.87380 0.90573 0.90792 0.90562 0.92982 0.83609 0.88178 0.85016 0.85133 0.88368 0.91998 0.96934 0.91601 0.91265 0.90003 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.52 11.54 21.44 0.25 -50.27 16 2 C 0.04 1.99 4.06 84.65 0.34 2.34 16 3 Si 0.93 42.07 29.22 68.60 2.00 44.08 16 4 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.48 -25.61 6.37 25.60 0.16 -25.45 16 8 H 0.05 2.84 7.82 -2.91 -0.02 2.81 16 9 C 0.04 1.89 1.72 -52.93 -0.09 1.80 16 10 C 0.11 5.14 4.80 86.30 0.41 5.55 16 11 N -0.52 -22.52 4.59 -896.37 -4.11 -26.63 16 12 C 0.04 1.96 4.86 86.33 0.42 2.38 16 13 C -0.11 -3.84 6.09 30.65 0.19 -3.65 16 14 C -0.10 -3.10 5.27 30.68 0.16 -2.94 16 15 C 0.02 0.64 2.82 -11.49 -0.03 0.60 16 16 H 0.10 3.50 8.14 -2.39 -0.02 3.49 16 17 C 0.24 7.74 6.65 138.63 0.92 8.67 16 18 N -0.34 -10.54 12.80 -51.34 -0.66 -11.19 16 19 N -0.48 -10.52 7.39 -50.71 -0.37 -10.90 16 20 H 0.45 6.37 8.96 -213.10 -1.91 4.46 16 21 C 0.32 7.19 7.67 138.23 1.06 8.25 16 22 C -0.11 -1.40 6.33 -11.54 -0.07 -1.47 16 23 C -0.15 -0.91 10.21 30.62 0.31 -0.60 16 24 C -0.15 -1.02 10.22 30.62 0.31 -0.71 16 25 N -0.56 -17.09 11.19 -179.73 -2.01 -19.10 16 26 C 0.08 2.97 4.69 86.33 0.41 3.37 16 27 C -0.20 -9.13 9.93 30.62 0.30 -8.83 16 28 C -0.18 -7.77 9.96 30.62 0.30 -7.47 16 29 H 0.26 14.03 8.32 -92.71 -0.77 13.26 16 30 H 0.04 1.68 7.76 -2.39 -0.02 1.66 16 31 H 0.04 2.08 6.20 -2.39 -0.01 2.07 16 32 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 33 H 0.11 5.30 3.60 -2.39 -0.01 5.30 16 34 H 0.08 2.57 8.14 -2.39 -0.02 2.56 16 35 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.15 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.13 0.35 8.14 -2.38 -0.02 0.33 16 41 H 0.13 0.44 8.14 -2.39 -0.02 0.43 16 42 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.06 2.38 7.93 -2.38 -0.02 2.36 16 44 H 0.01 0.52 8.14 -2.39 -0.02 0.51 16 45 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 46 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 47 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 48 H 0.08 3.25 8.14 -2.38 -0.02 3.23 16 Total: -1.00 -65.36 380.56 -0.74 -66.10 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: -0.96 Total: 26.08 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: 5.11 Total: -18.15 kcal Atomic # 7 Polarization: -111.20 SS G_CDS: -6.91 Total: -118.10 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.00 Total: 44.08 kcal Total: -65.36 -0.74 -66.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602796748.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.887 kcal (2) G-P(sol) polarization free energy of solvation -65.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds