Wall clock time and date at job start Tue Mar 31 2020 12:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 119.99767 * 2 1 4 4 C 1.39043 * 120.00050 * 180.02562 * 2 1 3 5 5 C 1.39476 * 120.15986 * 4.99733 * 4 2 1 6 6 C 1.38563 * 117.90757 * 179.97438 * 5 4 2 7 7 C 1.38818 * 118.03650 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99227 * 179.97438 * 7 6 5 9 9 H 1.09001 * 110.46059 * 324.04037 * 8 7 6 10 10 C 1.54377 * 110.41199 * 86.45290 * 8 7 6 11 11 C 1.54258 * 105.06038 * 142.63481 * 10 8 7 12 12 C 1.54377 * 105.06217 * 359.97438 * 11 10 8 13 13 N 1.48564 * 104.69730 * 336.08989 * 12 11 10 14 14 C 1.46900 * 110.99974 * 159.09898 * 13 12 11 15 15 C 1.53000 * 109.47142 * 75.81466 * 14 13 12 16 16 C 1.50696 * 115.55171 * 269.72205 * 15 14 13 17 17 H 1.08005 * 120.00082 * 114.48876 * 16 15 14 18 18 C 1.37879 * 120.00194 * 294.49464 * 16 15 14 19 19 N 1.31507 * 119.99699 * 350.84020 * 18 16 15 20 20 Si 1.86799 * 120.00058 * 170.84263 * 18 16 15 21 21 H 1.48496 * 109.47428 * 59.99796 * 20 18 16 22 22 H 1.48502 * 109.46866 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46826 * 299.99606 * 20 18 16 24 24 C 1.52995 * 117.49816 * 124.01278 * 15 14 13 25 25 C 1.52994 * 60.00416 * 252.51259 * 24 15 14 26 26 N 1.31790 * 120.01457 * 0.27632 * 7 6 5 27 27 N 1.28344 * 122.28484 * 359.42022 * 26 7 6 28 28 H 1.09001 * 109.46808 * 269.99558 * 1 2 3 29 29 H 1.08994 * 109.47383 * 29.99740 * 1 2 3 30 30 H 1.08996 * 109.47267 * 150.00008 * 1 2 3 31 31 H 1.09007 * 109.47077 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47396 * 300.00211 * 3 2 1 33 33 H 1.09003 * 109.47348 * 60.00689 * 3 2 1 34 34 H 1.08006 * 121.04709 * 359.97438 * 5 4 2 35 35 H 1.08002 * 120.98053 * 179.97438 * 6 5 4 36 36 H 1.09002 * 110.32322 * 23.73157 * 10 8 7 37 37 H 1.09001 * 110.40913 * 261.57269 * 10 8 7 38 38 H 1.09009 * 110.32052 * 241.10393 * 11 10 8 39 39 H 1.09005 * 110.32685 * 118.89774 * 11 10 8 40 40 H 1.08994 * 110.41103 * 94.92710 * 12 11 10 41 41 H 1.09006 * 110.41326 * 217.25474 * 12 11 10 42 42 H 1.08995 * 109.47247 * 195.81472 * 14 13 12 43 43 H 1.09000 * 109.46761 * 315.81876 * 14 13 12 44 44 H 0.97002 * 120.00213 * 185.02591 * 19 18 16 45 45 H 1.08998 * 117.50130 * 0.02562 * 24 15 14 46 46 H 1.09004 * 117.50116 * 145.02299 * 24 15 14 47 47 H 1.09003 * 117.49971 * 252.51895 * 25 24 15 48 48 H 1.08993 * 117.50238 * 107.48801 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1602 -1.2041 -0.0005 5 6 1.4702 -2.4116 -0.1061 6 6 2.2095 -3.5836 -0.1025 7 6 3.5898 -3.4839 0.0065 8 6 4.4367 -4.7304 0.0156 9 1 3.9246 -5.5351 0.5432 10 6 4.7745 -5.1623 -1.4275 11 6 6.2231 -5.6881 -1.3598 12 6 6.6390 -5.5290 0.1183 13 7 5.7577 -4.4548 0.6443 14 6 5.6699 -4.5162 2.1094 15 6 6.9582 -3.9624 2.7212 16 6 8.0478 -4.9739 2.9677 17 1 8.9752 -4.9135 2.4174 18 6 7.8608 -5.9764 3.8956 19 7 6.8145 -5.9486 4.6917 20 14 9.0937 -7.3741 4.0218 21 1 10.4330 -6.8245 4.3525 22 1 8.6679 -8.3148 5.0891 23 1 9.1605 -8.0938 2.7246 24 6 6.8283 -2.8069 3.7156 25 6 7.3840 -2.5505 2.3134 26 7 4.1593 -2.2998 0.1080 27 7 3.4813 -1.2100 0.0998 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 3.2692 1.0696 0.0005 32 1 1.9341 1.8404 -0.8899 33 1 1.9342 1.8403 0.8901 34 1 0.3934 -2.4326 -0.1882 35 1 1.7260 -4.5461 -0.1812 36 1 4.7126 -4.3087 -2.1025 37 1 4.0997 -5.9531 -1.7554 38 1 6.8724 -5.0924 -2.0016 39 1 6.2592 -6.7374 -1.6528 40 1 6.4716 -6.4585 0.6625 41 1 7.6851 -5.2311 0.1890 42 1 4.8219 -3.9209 2.4478 43 1 5.5349 -5.5516 2.4222 44 1 6.7205 -6.6126 5.3926 45 1 5.8249 -2.4415 3.9342 46 1 7.5309 -2.7782 4.5484 47 1 8.4523 -2.3533 2.2236 48 1 6.7463 -2.0163 1.6092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602843471.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:44 Heat of formation + Delta-G solvation = 111.605021 kcal Electronic energy + Delta-G solvation = -27358.373915 eV Core-core repulsion = 23836.305165 eV Total energy + Delta-G solvation = -3522.068750 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.85611 -38.50189 -36.93239 -35.88519 -33.06306 -31.88820 -31.62144 -30.92758 -28.71680 -27.92363 -25.66540 -25.38119 -24.54708 -23.82657 -22.05047 -20.81111 -20.41997 -20.08521 -18.62424 -17.46219 -17.23277 -16.18169 -15.91084 -15.55982 -14.93491 -14.68365 -14.54703 -14.28229 -14.08202 -13.67179 -13.63779 -13.44111 -12.92076 -12.74125 -12.46859 -12.41126 -12.13236 -12.04874 -11.74527 -11.57312 -11.27822 -10.89839 -10.82802 -10.69786 -10.54241 -10.45416 -10.33411 -10.27950 -10.07116 -9.89882 -9.84796 -9.20885 -9.12806 -8.66765 -8.28925 -7.90177 -7.76008 -7.44063 -5.93272 -3.95678 1.08189 1.39773 2.75381 3.34048 3.39069 3.42111 3.89433 4.38899 4.47009 4.48711 4.62115 4.77570 4.92995 4.98107 5.10450 5.11870 5.21596 5.26020 5.31622 5.35951 5.40242 5.43780 5.45242 5.70424 5.78463 5.83201 5.84272 5.96548 6.07418 6.20201 6.24222 6.29108 6.33638 6.45548 6.61970 6.75314 6.80928 6.88612 6.95764 7.07511 7.11196 7.12720 7.19199 7.36360 7.54867 7.77335 7.88621 8.05285 8.09004 8.64593 9.04970 9.24339 9.66072 11.14604 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.003844 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.243539 B = 7282.071434 C = 8052.933221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.614 5.614 3 C 0.093 3.907 4 C 0.326 3.674 5 C -0.188 4.188 6 C -0.077 4.077 7 C 0.038 3.962 8 C 0.113 3.887 9 H 0.061 0.939 10 C -0.108 4.108 11 C -0.125 4.125 12 C 0.048 3.952 13 N -0.476 5.476 14 C 0.101 3.899 15 C 0.058 3.942 16 C -0.485 4.485 17 H 0.057 0.943 18 C 0.070 3.930 19 N -0.881 5.881 20 Si 0.882 3.118 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.276 1.276 24 C -0.178 4.178 25 C -0.186 4.186 26 N -0.151 5.151 27 N -0.305 5.305 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.042 0.958 41 H 0.089 0.911 42 H 0.037 0.963 43 H 0.045 0.955 44 H 0.258 0.742 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.526 6.196 -12.331 20.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.331 5.331 3 C -0.049 4.049 4 C 0.087 3.913 5 C -0.221 4.221 6 C -0.106 4.106 7 C -0.112 4.112 8 C 0.002 3.998 9 H 0.079 0.921 10 C -0.147 4.147 11 C -0.163 4.163 12 C -0.080 4.080 13 N -0.200 5.200 14 C -0.026 4.026 15 C 0.057 3.943 16 C -0.523 4.523 17 H 0.075 0.925 18 C -0.133 4.133 19 N -0.518 5.518 20 Si 0.710 3.290 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.202 1.202 24 C -0.217 4.217 25 C -0.224 4.224 26 N 0.008 4.992 27 N -0.156 5.156 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.107 0.893 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.084 0.916 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.154 7.654 -12.169 19.486 hybrid contribution -1.256 -2.358 0.559 2.730 sum -14.411 5.296 -11.611 19.249 Atomic orbital electron populations 1.21677 0.78794 1.02823 1.01557 1.46002 1.04856 1.02870 1.79347 1.21666 0.99161 0.83812 1.00310 1.20132 0.91923 0.86615 0.92596 1.21708 1.01343 0.91621 1.07406 1.22022 0.94199 0.99156 0.95238 1.22417 0.91780 0.96101 1.00868 1.21364 0.92173 0.90322 0.95969 0.92097 1.22238 0.97132 1.00137 0.95163 1.22355 0.95614 1.00040 0.98310 1.22980 0.99504 0.93467 0.92043 1.65444 1.03669 1.42951 1.07933 1.21713 0.97210 0.99527 0.84193 1.18607 0.93402 0.86260 0.95983 1.20496 1.00144 1.09664 1.22023 0.92468 1.24962 0.95090 0.97583 0.95616 1.69992 1.28601 1.35437 1.17798 0.86818 0.81853 0.82661 0.77647 1.20350 1.21501 1.20162 1.22678 0.98827 1.07620 0.92551 1.22734 0.98741 1.03369 0.97521 1.72979 1.28446 0.93976 1.03756 1.73170 1.03269 1.21317 1.17797 0.92982 0.90990 0.91312 0.88778 0.93000 0.92892 0.84124 0.83896 0.91528 0.91818 0.91416 0.92039 0.93969 0.89300 0.94467 0.93660 0.93187 0.92703 0.90935 0.91642 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.68 10.35 59.85 0.62 1.30 16 2 N -0.61 -6.91 3.39 -189.52 -0.64 -7.55 16 3 C 0.09 0.94 10.72 59.85 0.64 1.58 16 4 C 0.33 4.65 7.45 -154.77 -1.15 3.50 16 5 C -0.19 -2.27 9.35 -39.00 -0.36 -2.64 16 6 C -0.08 -1.00 9.90 -39.25 -0.39 -1.38 16 7 C 0.04 0.63 5.51 -82.40 -0.45 0.17 16 8 C 0.11 1.89 2.53 -67.05 -0.17 1.72 16 9 H 0.06 1.00 8.00 -51.93 -0.42 0.58 16 10 C -0.11 -1.51 6.54 -25.35 -0.17 -1.68 16 11 C -0.12 -1.85 7.00 -25.35 -0.18 -2.03 16 12 C 0.05 0.92 5.66 -2.18 -0.01 0.90 16 13 N -0.48 -9.64 4.38 -223.24 -0.98 -10.61 16 14 C 0.10 2.40 4.70 -3.82 -0.02 2.38 16 15 C 0.06 1.49 1.30 -155.66 -0.20 1.29 16 16 C -0.49 -13.28 7.95 -34.44 -0.27 -13.55 16 17 H 0.06 1.58 7.83 -52.48 -0.41 1.16 16 18 C 0.07 1.92 5.17 -17.82 -0.09 1.83 16 19 N -0.88 -25.18 12.80 55.43 0.71 -24.47 16 20 Si 0.88 21.14 29.55 -169.99 -5.02 16.12 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C -0.18 -4.55 9.88 -26.74 -0.26 -4.81 16 25 C -0.19 -4.51 9.74 -26.73 -0.26 -4.77 16 26 N -0.15 -2.87 10.90 33.61 0.37 -2.50 16 27 N -0.30 -5.38 10.04 31.23 0.31 -5.06 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 30 H 0.07 0.41 6.03 -51.93 -0.31 0.10 16 31 H 0.09 1.16 6.85 -51.93 -0.36 0.80 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.14 1.20 6.14 -52.48 -0.32 0.88 16 35 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.07 0.95 7.85 -51.93 -0.41 0.54 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.04 0.86 7.73 -51.93 -0.40 0.45 16 41 H 0.09 1.85 7.86 -51.93 -0.41 1.44 16 42 H 0.04 0.91 7.51 -51.93 -0.39 0.52 16 43 H 0.05 1.17 7.00 -51.93 -0.36 0.81 16 44 H 0.26 7.11 8.32 -40.82 -0.34 6.77 16 45 H 0.05 1.37 8.03 -51.93 -0.42 0.95 16 46 H 0.07 1.91 8.14 -51.93 -0.42 1.49 16 47 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 48 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 LS Contribution 384.67 15.07 5.80 5.80 Total: -1.00 -31.83 384.67 -10.18 -42.01 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -7.99 Total: 2.48 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -2.73 Total: -16.20 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.23 Total: -50.20 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.83 -10.18 -42.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602843471.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.611 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds