Wall clock time and date at job start Tue Mar 31 2020 12:07:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.46502 * 119.99767 * 2 1
4 4 C 1.39043 * 120.00050 * 180.02562 * 2 1 3
5 5 C 1.39476 * 120.15986 * 4.99733 * 4 2 1
6 6 C 1.38563 * 117.90757 * 179.97438 * 5 4 2
7 7 C 1.38818 * 118.03650 * 0.02562 * 6 5 4
8 8 C 1.50699 * 119.99227 * 179.97438 * 7 6 5
9 9 H 1.09001 * 110.46059 * 324.04037 * 8 7 6
10 10 C 1.54377 * 110.41199 * 86.45290 * 8 7 6
11 11 C 1.54258 * 105.06038 * 142.63481 * 10 8 7
12 12 C 1.54377 * 105.06217 * 359.97438 * 11 10 8
13 13 N 1.48564 * 104.69730 * 336.08989 * 12 11 10
14 14 C 1.46900 * 110.99974 * 159.09898 * 13 12 11
15 15 C 1.53000 * 109.47142 * 75.81466 * 14 13 12
16 16 C 1.50696 * 115.55171 * 269.72205 * 15 14 13
17 17 H 1.08005 * 120.00082 * 114.48876 * 16 15 14
18 18 C 1.37879 * 120.00194 * 294.49464 * 16 15 14
19 19 N 1.31507 * 119.99699 * 350.84020 * 18 16 15
20 20 Si 1.86799 * 120.00058 * 170.84263 * 18 16 15
21 21 H 1.48496 * 109.47428 * 59.99796 * 20 18 16
22 22 H 1.48502 * 109.46866 * 179.97438 * 20 18 16
23 23 H 1.48503 * 109.46826 * 299.99606 * 20 18 16
24 24 C 1.52995 * 117.49816 * 124.01278 * 15 14 13
25 25 C 1.52994 * 60.00416 * 252.51259 * 24 15 14
26 26 N 1.31790 * 120.01457 * 0.27632 * 7 6 5
27 27 N 1.28344 * 122.28484 * 359.42022 * 26 7 6
28 28 H 1.09001 * 109.46808 * 269.99558 * 1 2 3
29 29 H 1.08994 * 109.47383 * 29.99740 * 1 2 3
30 30 H 1.08996 * 109.47267 * 150.00008 * 1 2 3
31 31 H 1.09007 * 109.47077 * 179.97438 * 3 2 1
32 32 H 1.08993 * 109.47396 * 300.00211 * 3 2 1
33 33 H 1.09003 * 109.47348 * 60.00689 * 3 2 1
34 34 H 1.08006 * 121.04709 * 359.97438 * 5 4 2
35 35 H 1.08002 * 120.98053 * 179.97438 * 6 5 4
36 36 H 1.09002 * 110.32322 * 23.73157 * 10 8 7
37 37 H 1.09001 * 110.40913 * 261.57269 * 10 8 7
38 38 H 1.09009 * 110.32052 * 241.10393 * 11 10 8
39 39 H 1.09005 * 110.32685 * 118.89774 * 11 10 8
40 40 H 1.08994 * 110.41103 * 94.92710 * 12 11 10
41 41 H 1.09006 * 110.41326 * 217.25474 * 12 11 10
42 42 H 1.08995 * 109.47247 * 195.81472 * 14 13 12
43 43 H 1.09000 * 109.46761 * 315.81876 * 14 13 12
44 44 H 0.97002 * 120.00213 * 185.02591 * 19 18 16
45 45 H 1.08998 * 117.50130 * 0.02562 * 24 15 14
46 46 H 1.09004 * 117.50116 * 145.02299 * 24 15 14
47 47 H 1.09003 * 117.49971 * 252.51895 * 25 24 15
48 48 H 1.08993 * 117.50238 * 107.48801 * 25 24 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1974 1.2688 0.0000
4 6 2.1602 -1.2041 -0.0005
5 6 1.4702 -2.4116 -0.1061
6 6 2.2095 -3.5836 -0.1025
7 6 3.5898 -3.4839 0.0065
8 6 4.4367 -4.7304 0.0156
9 1 3.9246 -5.5351 0.5432
10 6 4.7745 -5.1623 -1.4275
11 6 6.2231 -5.6881 -1.3598
12 6 6.6390 -5.5290 0.1183
13 7 5.7577 -4.4548 0.6443
14 6 5.6699 -4.5162 2.1094
15 6 6.9582 -3.9624 2.7212
16 6 8.0478 -4.9739 2.9677
17 1 8.9752 -4.9135 2.4174
18 6 7.8608 -5.9764 3.8956
19 7 6.8145 -5.9486 4.6917
20 14 9.0937 -7.3741 4.0218
21 1 10.4330 -6.8245 4.3525
22 1 8.6679 -8.3148 5.0891
23 1 9.1605 -8.0938 2.7246
24 6 6.8283 -2.8069 3.7156
25 6 7.3840 -2.5505 2.3134
26 7 4.1593 -2.2998 0.1080
27 7 3.4813 -1.2100 0.0998
28 1 -0.3633 -0.0001 1.0277
29 1 -0.3634 0.8899 -0.5138
30 1 -0.3633 -0.8899 -0.5138
31 1 3.2692 1.0696 0.0005
32 1 1.9341 1.8404 -0.8899
33 1 1.9342 1.8403 0.8901
34 1 0.3934 -2.4326 -0.1882
35 1 1.7260 -4.5461 -0.1812
36 1 4.7126 -4.3087 -2.1025
37 1 4.0997 -5.9531 -1.7554
38 1 6.8724 -5.0924 -2.0016
39 1 6.2592 -6.7374 -1.6528
40 1 6.4716 -6.4585 0.6625
41 1 7.6851 -5.2311 0.1890
42 1 4.8219 -3.9209 2.4478
43 1 5.5349 -5.5516 2.4222
44 1 6.7205 -6.6126 5.3926
45 1 5.8249 -2.4415 3.9342
46 1 7.5309 -2.7782 4.5484
47 1 8.4523 -2.3533 2.2236
48 1 6.7463 -2.0163 1.6092
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000602843471.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:07:44
Heat of formation + Delta-G solvation = 92.868948 kcal
Electronic energy + Delta-G solvation = -27359.186372 eV
Core-core repulsion = 23836.305165 eV
Total energy + Delta-G solvation = -3522.881207 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 316.196 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.95059 -39.94880 -38.06824 -37.57601 -34.14527 -34.02391 -32.69755 -32.44097
-29.58922 -28.98547 -27.72264 -26.56292 -26.06313 -24.97746 -23.03915 -22.82952
-21.93960 -21.35289 -20.56659 -18.37031 -18.32532 -18.04403 -17.27496 -16.58200
-16.47232 -16.35330 -15.62903 -15.51764 -15.31440 -15.15721 -15.04677 -14.56844
-14.44639 -14.02345 -13.83827 -13.42407 -13.34309 -13.09347 -13.01704 -12.97556
-12.81566 -12.77299 -12.62954 -12.33388 -12.16079 -11.96745 -11.89884 -11.77402
-11.34094 -11.28662 -11.17271 -10.91369 -10.75513 -10.37603 -10.27777 -9.92586
-9.09044 -8.69497 -8.06079 -6.14814 0.07055 0.33020 1.42606 1.43294
1.50910 1.93177 2.44723 2.78003 3.09299 3.18536 3.31204 3.69350
3.78080 3.81826 3.90526 3.98225 4.03357 4.19213 4.30405 4.31948
4.42615 4.47628 4.48766 4.53200 4.64849 4.72756 4.74824 4.77611
4.84073 4.87732 4.91993 4.97682 4.99961 5.03304 5.06445 5.09697
5.19035 5.24774 5.29589 5.31627 5.36720 5.42190 5.65268 5.69645
5.84780 6.13634 6.20047 6.28703 6.39407 6.51469 6.90747 7.49773
8.13115 9.01546
Molecular weight = 316.20amu
Principal moments of inertia in cm(-1)
A = 0.017363 B = 0.003844 C = 0.003476
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1612.243539 B = 7282.071434 C = 8052.933221
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.088 3.912
2 N -0.615 5.615
3 C 0.091 3.909
4 C 0.315 3.685
5 C -0.176 4.176
6 C -0.074 4.074
7 C 0.019 3.981
8 C 0.110 3.890
9 H 0.065 0.935
10 C -0.097 4.097
11 C -0.115 4.115
12 C 0.046 3.954
13 N -0.486 5.486
14 C 0.127 3.873
15 C 0.046 3.954
16 C -0.498 4.498
17 H 0.049 0.951
18 C 0.029 3.971
19 N -0.909 5.909
20 Si 0.944 3.056
21 H -0.276 1.276
22 H -0.286 1.286
23 H -0.267 1.267
24 C -0.185 4.185
25 C -0.165 4.165
26 N -0.200 5.200
27 N -0.348 5.348
28 H 0.057 0.943
29 H 0.094 0.906
30 H 0.085 0.915
31 H 0.064 0.936
32 H 0.075 0.925
33 H 0.064 0.936
34 H 0.183 0.817
35 H 0.180 0.820
36 H 0.064 0.936
37 H 0.100 0.900
38 H 0.071 0.929
39 H 0.087 0.913
40 H 0.025 0.975
41 H 0.063 0.937
42 H 0.020 0.980
43 H 0.016 0.984
44 H 0.259 0.741
45 H 0.053 0.947
46 H 0.059 0.941
47 H 0.068 0.932
48 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.747 5.430 -14.185 22.609
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 N -0.331 5.331
3 C -0.052 4.052
4 C 0.074 3.926
5 C -0.209 4.209
6 C -0.103 4.103
7 C -0.133 4.133
8 C 0.000 4.000
9 H 0.083 0.917
10 C -0.135 4.135
11 C -0.153 4.153
12 C -0.082 4.082
13 N -0.210 5.210
14 C -0.001 4.001
15 C 0.045 3.955
16 C -0.536 4.536
17 H 0.068 0.932
18 C -0.171 4.171
19 N -0.547 5.547
20 Si 0.770 3.230
21 H -0.201 1.201
22 H -0.211 1.211
23 H -0.191 1.191
24 C -0.223 4.223
25 C -0.203 4.203
26 N -0.039 5.039
27 N -0.198 5.198
28 H 0.076 0.924
29 H 0.113 0.887
30 H 0.103 0.897
31 H 0.083 0.917
32 H 0.094 0.906
33 H 0.083 0.917
34 H 0.200 0.800
35 H 0.197 0.803
36 H 0.083 0.917
37 H 0.118 0.882
38 H 0.090 0.910
39 H 0.106 0.894
40 H 0.043 0.957
41 H 0.081 0.919
42 H 0.038 0.962
43 H 0.035 0.965
44 H 0.068 0.932
45 H 0.072 0.928
46 H 0.077 0.923
47 H 0.086 0.914
48 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -15.387 6.927 -14.040 21.951
hybrid contribution -0.665 -1.993 1.142 2.392
sum -16.052 4.934 -12.898 21.175
Atomic orbital electron populations
1.21971 0.76113 1.04820 1.02521 1.46379 1.06459 1.02114 1.78137
1.21709 0.97587 0.83899 1.02017 1.20496 0.91440 0.88633 0.91997
1.22140 1.03170 0.90277 1.05267 1.22368 0.92741 1.01184 0.94031
1.22513 0.93474 0.95236 1.02053 1.21502 0.90326 0.90970 0.97242
0.91749 1.22226 0.97045 1.01084 0.93170 1.22307 0.96229 1.01909
0.94822 1.22919 0.98127 0.92112 0.95006 1.65339 1.06406 1.43704
1.05530 1.21245 0.95287 0.96919 0.86692 1.18775 0.94177 0.86431
0.96121 1.20649 1.00269 1.10519 1.22141 0.93239 1.25607 0.96861
0.99531 0.95133 1.70111 1.30154 1.36184 1.18253 0.85833 0.79516
0.79714 0.77942 1.20108 1.21145 1.19141 1.22595 0.98483 1.08573
0.92657 1.22597 0.98649 1.02607 0.96419 1.72822 1.30326 0.95034
1.05738 1.73013 1.05326 1.21186 1.20270 0.92426 0.88700 0.89688
0.91707 0.90644 0.91712 0.80013 0.80295 0.91706 0.88200 0.91021
0.89404 0.95714 0.91857 0.96186 0.96546 0.93210 0.92848 0.92269
0.91387 0.90002
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.95 10.35 127.77 1.32 2.27 16
2 N -0.62 -12.71 3.39 -753.50 -2.56 -15.27 16
3 C 0.09 1.75 10.72 127.77 1.37 3.12 16
4 C 0.32 8.66 7.45 133.10 0.99 9.65 16
5 C -0.18 -3.77 9.35 22.65 0.21 -3.56 16
6 C -0.07 -1.76 9.90 22.49 0.22 -1.54 16
7 C 0.02 0.62 5.51 42.70 0.24 0.85 16
8 C 0.11 3.62 2.53 44.25 0.11 3.73 16
9 H 0.06 2.05 8.00 -2.39 -0.02 2.04 16
10 C -0.10 -2.49 6.54 31.49 0.21 -2.28 16
11 C -0.11 -3.21 7.00 31.49 0.22 -2.99 16
12 C 0.05 1.80 5.66 86.45 0.49 2.29 16
13 N -0.49 -20.17 4.38 -860.21 -3.77 -23.94 16
14 C 0.13 6.27 4.70 86.30 0.41 6.68 16
15 C 0.05 2.43 1.30 -52.93 -0.07 2.36 16
16 C -0.50 -28.03 7.95 25.60 0.20 -27.83 16
17 H 0.05 2.80 7.83 -2.91 -0.02 2.78 16
18 C 0.03 1.60 5.17 84.66 0.44 2.04 16
19 N -0.91 -53.13 12.80 21.45 0.27 -52.86 16
20 Si 0.94 43.86 29.55 68.60 2.03 45.89 16
21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16
22 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16
23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16
24 C -0.18 -9.82 9.88 30.59 0.30 -9.51 16
25 C -0.17 -8.31 9.74 30.59 0.30 -8.01 16
26 N -0.20 -7.80 10.90 -47.57 -0.52 -8.32 16
27 N -0.35 -12.54 10.04 -55.10 -0.55 -13.10 16
28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16
29 H 0.09 0.63 8.07 -2.39 -0.02 0.61 16
30 H 0.08 0.65 6.03 -2.39 -0.01 0.64 16
31 H 0.06 1.66 6.85 -2.38 -0.02 1.64 16
32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16
33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
34 H 0.18 2.24 6.14 -2.91 -0.02 2.22 16
35 H 0.18 2.78 8.06 -2.91 -0.02 2.75 16
36 H 0.06 1.72 7.85 -2.39 -0.02 1.70 16
37 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16
38 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16
39 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16
40 H 0.02 1.03 7.73 -2.39 -0.02 1.01 16
41 H 0.06 2.73 7.86 -2.38 -0.02 2.71 16
42 H 0.02 1.02 7.51 -2.39 -0.02 1.00 16
43 H 0.02 0.89 7.00 -2.39 -0.02 0.87 16
44 H 0.26 14.48 8.32 -92.71 -0.77 13.71 16
45 H 0.05 2.80 8.03 -2.39 -0.02 2.78 16
46 H 0.06 3.25 8.14 -2.38 -0.02 3.23 16
47 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16
48 H 0.08 4.12 8.14 -2.39 -0.02 4.10 16
Total: -1.00 -72.99 384.67 2.80 -70.19
By element:
Atomic # 1 Polarization: 19.18 SS G_CDS: 0.93 Total: 20.11 kcal
Atomic # 6 Polarization: -29.68 SS G_CDS: 6.96 Total: -22.72 kcal
Atomic # 7 Polarization: -106.35 SS G_CDS: -7.12 Total: -113.47 kcal
Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal
Total: -72.99 2.80 -70.19 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602843471.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 163.055 kcal
(2) G-P(sol) polarization free energy of solvation -72.985 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.070 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.186 kcal
(6) G-S(sol) free energy of system = (1) + (5) 92.869 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds