Wall clock time and date at job start Tue Mar 31 2020 12:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 119.99767 * 2 1 4 4 C 1.39043 * 120.00050 * 180.02562 * 2 1 3 5 5 C 1.39476 * 120.15986 * 4.99733 * 4 2 1 6 6 C 1.38563 * 117.90757 * 179.97438 * 5 4 2 7 7 C 1.38818 * 118.03650 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99227 * 179.97438 * 7 6 5 9 9 H 1.09001 * 110.46059 * 324.04037 * 8 7 6 10 10 C 1.54377 * 110.41199 * 86.45290 * 8 7 6 11 11 C 1.54258 * 105.06038 * 142.63481 * 10 8 7 12 12 C 1.54377 * 105.06217 * 359.97438 * 11 10 8 13 13 N 1.48564 * 104.69730 * 336.08989 * 12 11 10 14 14 C 1.46900 * 110.99974 * 159.09898 * 13 12 11 15 15 C 1.53000 * 109.47142 * 75.81466 * 14 13 12 16 16 C 1.50696 * 115.55171 * 269.72205 * 15 14 13 17 17 H 1.08005 * 120.00082 * 114.48876 * 16 15 14 18 18 C 1.37879 * 120.00194 * 294.49464 * 16 15 14 19 19 N 1.31507 * 119.99699 * 350.84020 * 18 16 15 20 20 Si 1.86799 * 120.00058 * 170.84263 * 18 16 15 21 21 H 1.48496 * 109.47428 * 59.99796 * 20 18 16 22 22 H 1.48502 * 109.46866 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46826 * 299.99606 * 20 18 16 24 24 C 1.52995 * 117.49816 * 124.01278 * 15 14 13 25 25 C 1.52994 * 60.00416 * 252.51259 * 24 15 14 26 26 N 1.31790 * 120.01457 * 0.27632 * 7 6 5 27 27 N 1.28344 * 122.28484 * 359.42022 * 26 7 6 28 28 H 1.09001 * 109.46808 * 269.99558 * 1 2 3 29 29 H 1.08994 * 109.47383 * 29.99740 * 1 2 3 30 30 H 1.08996 * 109.47267 * 150.00008 * 1 2 3 31 31 H 1.09007 * 109.47077 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47396 * 300.00211 * 3 2 1 33 33 H 1.09003 * 109.47348 * 60.00689 * 3 2 1 34 34 H 1.08006 * 121.04709 * 359.97438 * 5 4 2 35 35 H 1.08002 * 120.98053 * 179.97438 * 6 5 4 36 36 H 1.09002 * 110.32322 * 23.73157 * 10 8 7 37 37 H 1.09001 * 110.40913 * 261.57269 * 10 8 7 38 38 H 1.09009 * 110.32052 * 241.10393 * 11 10 8 39 39 H 1.09005 * 110.32685 * 118.89774 * 11 10 8 40 40 H 1.08994 * 110.41103 * 94.92710 * 12 11 10 41 41 H 1.09006 * 110.41326 * 217.25474 * 12 11 10 42 42 H 1.08995 * 109.47247 * 195.81472 * 14 13 12 43 43 H 1.09000 * 109.46761 * 315.81876 * 14 13 12 44 44 H 0.97002 * 120.00213 * 185.02591 * 19 18 16 45 45 H 1.08998 * 117.50130 * 0.02562 * 24 15 14 46 46 H 1.09004 * 117.50116 * 145.02299 * 24 15 14 47 47 H 1.09003 * 117.49971 * 252.51895 * 25 24 15 48 48 H 1.08993 * 117.50238 * 107.48801 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1602 -1.2041 -0.0005 5 6 1.4702 -2.4116 -0.1061 6 6 2.2095 -3.5836 -0.1025 7 6 3.5898 -3.4839 0.0065 8 6 4.4367 -4.7304 0.0156 9 1 3.9246 -5.5351 0.5432 10 6 4.7745 -5.1623 -1.4275 11 6 6.2231 -5.6881 -1.3598 12 6 6.6390 -5.5290 0.1183 13 7 5.7577 -4.4548 0.6443 14 6 5.6699 -4.5162 2.1094 15 6 6.9582 -3.9624 2.7212 16 6 8.0478 -4.9739 2.9677 17 1 8.9752 -4.9135 2.4174 18 6 7.8608 -5.9764 3.8956 19 7 6.8145 -5.9486 4.6917 20 14 9.0937 -7.3741 4.0218 21 1 10.4330 -6.8245 4.3525 22 1 8.6679 -8.3148 5.0891 23 1 9.1605 -8.0938 2.7246 24 6 6.8283 -2.8069 3.7156 25 6 7.3840 -2.5505 2.3134 26 7 4.1593 -2.2998 0.1080 27 7 3.4813 -1.2100 0.0998 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 3.2692 1.0696 0.0005 32 1 1.9341 1.8404 -0.8899 33 1 1.9342 1.8403 0.8901 34 1 0.3934 -2.4326 -0.1882 35 1 1.7260 -4.5461 -0.1812 36 1 4.7126 -4.3087 -2.1025 37 1 4.0997 -5.9531 -1.7554 38 1 6.8724 -5.0924 -2.0016 39 1 6.2592 -6.7374 -1.6528 40 1 6.4716 -6.4585 0.6625 41 1 7.6851 -5.2311 0.1890 42 1 4.8219 -3.9209 2.4478 43 1 5.5349 -5.5516 2.4222 44 1 6.7205 -6.6126 5.3926 45 1 5.8249 -2.4415 3.9342 46 1 7.5309 -2.7782 4.5484 47 1 8.4523 -2.3533 2.2236 48 1 6.7463 -2.0163 1.6092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602843471.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:44 Heat of formation + Delta-G solvation = 92.868948 kcal Electronic energy + Delta-G solvation = -27359.186372 eV Core-core repulsion = 23836.305165 eV Total energy + Delta-G solvation = -3522.881207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.95059 -39.94880 -38.06824 -37.57601 -34.14527 -34.02391 -32.69755 -32.44097 -29.58922 -28.98547 -27.72264 -26.56292 -26.06313 -24.97746 -23.03915 -22.82952 -21.93960 -21.35289 -20.56659 -18.37031 -18.32532 -18.04403 -17.27496 -16.58200 -16.47232 -16.35330 -15.62903 -15.51764 -15.31440 -15.15721 -15.04677 -14.56844 -14.44639 -14.02345 -13.83827 -13.42407 -13.34309 -13.09347 -13.01704 -12.97556 -12.81566 -12.77299 -12.62954 -12.33388 -12.16079 -11.96745 -11.89884 -11.77402 -11.34094 -11.28662 -11.17271 -10.91369 -10.75513 -10.37603 -10.27777 -9.92586 -9.09044 -8.69497 -8.06079 -6.14814 0.07055 0.33020 1.42606 1.43294 1.50910 1.93177 2.44723 2.78003 3.09299 3.18536 3.31204 3.69350 3.78080 3.81826 3.90526 3.98225 4.03357 4.19213 4.30405 4.31948 4.42615 4.47628 4.48766 4.53200 4.64849 4.72756 4.74824 4.77611 4.84073 4.87732 4.91993 4.97682 4.99961 5.03304 5.06445 5.09697 5.19035 5.24774 5.29589 5.31627 5.36720 5.42190 5.65268 5.69645 5.84780 6.13634 6.20047 6.28703 6.39407 6.51469 6.90747 7.49773 8.13115 9.01546 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.003844 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.243539 B = 7282.071434 C = 8052.933221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.615 5.615 3 C 0.091 3.909 4 C 0.315 3.685 5 C -0.176 4.176 6 C -0.074 4.074 7 C 0.019 3.981 8 C 0.110 3.890 9 H 0.065 0.935 10 C -0.097 4.097 11 C -0.115 4.115 12 C 0.046 3.954 13 N -0.486 5.486 14 C 0.127 3.873 15 C 0.046 3.954 16 C -0.498 4.498 17 H 0.049 0.951 18 C 0.029 3.971 19 N -0.909 5.909 20 Si 0.944 3.056 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.267 1.267 24 C -0.185 4.185 25 C -0.165 4.165 26 N -0.200 5.200 27 N -0.348 5.348 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.183 0.817 35 H 0.180 0.820 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.025 0.975 41 H 0.063 0.937 42 H 0.020 0.980 43 H 0.016 0.984 44 H 0.259 0.741 45 H 0.053 0.947 46 H 0.059 0.941 47 H 0.068 0.932 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.747 5.430 -14.185 22.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.331 5.331 3 C -0.052 4.052 4 C 0.074 3.926 5 C -0.209 4.209 6 C -0.103 4.103 7 C -0.133 4.133 8 C 0.000 4.000 9 H 0.083 0.917 10 C -0.135 4.135 11 C -0.153 4.153 12 C -0.082 4.082 13 N -0.210 5.210 14 C -0.001 4.001 15 C 0.045 3.955 16 C -0.536 4.536 17 H 0.068 0.932 18 C -0.171 4.171 19 N -0.547 5.547 20 Si 0.770 3.230 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.191 1.191 24 C -0.223 4.223 25 C -0.203 4.203 26 N -0.039 5.039 27 N -0.198 5.198 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.200 0.800 35 H 0.197 0.803 36 H 0.083 0.917 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.043 0.957 41 H 0.081 0.919 42 H 0.038 0.962 43 H 0.035 0.965 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.387 6.927 -14.040 21.951 hybrid contribution -0.665 -1.993 1.142 2.392 sum -16.052 4.934 -12.898 21.175 Atomic orbital electron populations 1.21971 0.76113 1.04820 1.02521 1.46379 1.06459 1.02114 1.78137 1.21709 0.97587 0.83899 1.02017 1.20496 0.91440 0.88633 0.91997 1.22140 1.03170 0.90277 1.05267 1.22368 0.92741 1.01184 0.94031 1.22513 0.93474 0.95236 1.02053 1.21502 0.90326 0.90970 0.97242 0.91749 1.22226 0.97045 1.01084 0.93170 1.22307 0.96229 1.01909 0.94822 1.22919 0.98127 0.92112 0.95006 1.65339 1.06406 1.43704 1.05530 1.21245 0.95287 0.96919 0.86692 1.18775 0.94177 0.86431 0.96121 1.20649 1.00269 1.10519 1.22141 0.93239 1.25607 0.96861 0.99531 0.95133 1.70111 1.30154 1.36184 1.18253 0.85833 0.79516 0.79714 0.77942 1.20108 1.21145 1.19141 1.22595 0.98483 1.08573 0.92657 1.22597 0.98649 1.02607 0.96419 1.72822 1.30326 0.95034 1.05738 1.73013 1.05326 1.21186 1.20270 0.92426 0.88700 0.89688 0.91707 0.90644 0.91712 0.80013 0.80295 0.91706 0.88200 0.91021 0.89404 0.95714 0.91857 0.96186 0.96546 0.93210 0.92848 0.92269 0.91387 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.95 10.35 127.77 1.32 2.27 16 2 N -0.62 -12.71 3.39 -753.50 -2.56 -15.27 16 3 C 0.09 1.75 10.72 127.77 1.37 3.12 16 4 C 0.32 8.66 7.45 133.10 0.99 9.65 16 5 C -0.18 -3.77 9.35 22.65 0.21 -3.56 16 6 C -0.07 -1.76 9.90 22.49 0.22 -1.54 16 7 C 0.02 0.62 5.51 42.70 0.24 0.85 16 8 C 0.11 3.62 2.53 44.25 0.11 3.73 16 9 H 0.06 2.05 8.00 -2.39 -0.02 2.04 16 10 C -0.10 -2.49 6.54 31.49 0.21 -2.28 16 11 C -0.11 -3.21 7.00 31.49 0.22 -2.99 16 12 C 0.05 1.80 5.66 86.45 0.49 2.29 16 13 N -0.49 -20.17 4.38 -860.21 -3.77 -23.94 16 14 C 0.13 6.27 4.70 86.30 0.41 6.68 16 15 C 0.05 2.43 1.30 -52.93 -0.07 2.36 16 16 C -0.50 -28.03 7.95 25.60 0.20 -27.83 16 17 H 0.05 2.80 7.83 -2.91 -0.02 2.78 16 18 C 0.03 1.60 5.17 84.66 0.44 2.04 16 19 N -0.91 -53.13 12.80 21.45 0.27 -52.86 16 20 Si 0.94 43.86 29.55 68.60 2.03 45.89 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 C -0.18 -9.82 9.88 30.59 0.30 -9.51 16 25 C -0.17 -8.31 9.74 30.59 0.30 -8.01 16 26 N -0.20 -7.80 10.90 -47.57 -0.52 -8.32 16 27 N -0.35 -12.54 10.04 -55.10 -0.55 -13.10 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.09 0.63 8.07 -2.39 -0.02 0.61 16 30 H 0.08 0.65 6.03 -2.39 -0.01 0.64 16 31 H 0.06 1.66 6.85 -2.38 -0.02 1.64 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.18 2.24 6.14 -2.91 -0.02 2.22 16 35 H 0.18 2.78 8.06 -2.91 -0.02 2.75 16 36 H 0.06 1.72 7.85 -2.39 -0.02 1.70 16 37 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.02 1.03 7.73 -2.39 -0.02 1.01 16 41 H 0.06 2.73 7.86 -2.38 -0.02 2.71 16 42 H 0.02 1.02 7.51 -2.39 -0.02 1.00 16 43 H 0.02 0.89 7.00 -2.39 -0.02 0.87 16 44 H 0.26 14.48 8.32 -92.71 -0.77 13.71 16 45 H 0.05 2.80 8.03 -2.39 -0.02 2.78 16 46 H 0.06 3.25 8.14 -2.38 -0.02 3.23 16 47 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16 48 H 0.08 4.12 8.14 -2.39 -0.02 4.10 16 Total: -1.00 -72.99 384.67 2.80 -70.19 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.93 Total: 20.11 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: 6.96 Total: -22.72 kcal Atomic # 7 Polarization: -106.35 SS G_CDS: -7.12 Total: -113.47 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -72.99 2.80 -70.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602843471.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.055 kcal (2) G-P(sol) polarization free energy of solvation -72.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds