Wall clock time and date at job start Tue Mar 31 2020 12:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38238 * 119.99957 * 2 1 4 4 C 1.38229 * 120.00114 * 180.02562 * 3 2 1 5 5 C 1.38236 * 120.00065 * 359.95202 * 4 3 2 6 6 C 1.50705 * 120.00209 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46972 * 90.00138 * 6 5 4 8 8 C 1.52999 * 109.46830 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.47233 * 304.99743 * 8 7 6 10 10 C 1.53003 * 109.46826 * 184.99776 * 8 7 6 11 11 N 1.46904 * 109.47505 * 64.99966 * 8 7 6 12 12 C 1.46904 * 110.99824 * 238.96126 * 11 8 7 13 13 C 1.53045 * 109.45357 * 274.52506 * 12 11 8 14 14 C 1.53201 * 109.30731 * 178.61345 * 13 12 11 15 15 N 1.46924 * 108.77154 * 54.63912 * 14 13 12 16 16 C 1.36939 * 120.62953 * 126.37158 * 15 14 13 17 17 H 1.08010 * 119.99414 * 206.33330 * 16 15 14 18 18 C 1.38809 * 120.00257 * 26.33196 * 16 15 14 19 19 N 1.31620 * 120.00145 * 18.11664 * 18 16 15 20 20 Si 1.86797 * 119.99930 * 198.11516 * 18 16 15 21 21 H 1.48504 * 109.47248 * 94.96229 * 20 18 16 22 22 H 1.48498 * 109.46933 * 214.95800 * 20 18 16 23 23 H 1.48499 * 109.47378 * 334.95995 * 20 18 16 24 24 C 1.46934 * 118.74028 * 306.38433 * 15 14 13 25 25 C 1.53031 * 109.45901 * 154.45806 * 12 11 8 26 26 C 1.38235 * 120.00059 * 0.27618 * 5 4 3 27 27 C 1.38233 * 120.00059 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47289 * 90.00278 * 1 2 3 29 29 H 1.08995 * 109.47200 * 210.00418 * 1 2 3 30 30 H 1.09005 * 109.47240 * 330.00339 * 1 2 3 31 31 H 1.08004 * 120.00009 * 359.96985 * 3 2 1 32 32 H 1.08006 * 120.00233 * 179.97438 * 4 3 2 33 33 H 1.08996 * 109.47112 * 329.99857 * 6 5 4 34 34 H 1.08996 * 109.47054 * 209.99742 * 6 5 4 35 35 H 1.08996 * 109.47432 * 59.99915 * 7 6 5 36 36 H 1.08996 * 109.46908 * 299.99693 * 7 6 5 37 37 H 1.09004 * 109.46650 * 174.75716 * 10 8 7 38 38 H 1.08999 * 109.46990 * 54.76182 * 10 8 7 39 39 H 1.08997 * 109.47341 * 294.75685 * 10 8 7 40 40 H 1.00893 * 111.00274 * 115.00294 * 11 8 7 41 41 H 1.09001 * 109.45968 * 34.48040 * 12 11 8 42 42 H 1.08994 * 109.49691 * 298.56268 * 13 12 11 43 43 H 1.08997 * 109.49983 * 58.66804 * 13 12 11 44 44 H 1.08997 * 109.58636 * 294.84529 * 14 13 12 45 45 H 1.08999 * 109.58143 * 174.42216 * 14 13 12 46 46 H 0.96991 * 120.00048 * 180.02562 * 19 18 16 47 47 H 1.08998 * 109.58419 * 293.82771 * 24 15 14 48 48 H 1.08996 * 109.70156 * 173.46881 * 24 15 14 49 49 H 1.09001 * 109.50227 * 301.33295 * 25 12 11 50 50 H 1.09002 * 109.49638 * 61.39929 * 25 12 11 51 51 H 1.08001 * 120.00135 * 179.72747 * 26 5 4 52 52 H 1.07993 * 120.00025 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0001 6 6 5.7787 0.0001 -0.0001 7 6 6.2887 0.0006 1.4424 8 6 7.8187 0.0013 1.4424 9 1 8.1824 -0.8405 0.8532 10 6 8.3287 -0.1239 2.8795 11 7 8.3079 1.2566 0.8568 12 6 9.1502 0.9962 -0.3183 13 6 10.5890 0.7356 0.1336 14 6 11.4572 0.4303 -1.0912 15 7 11.3173 1.5298 -2.0557 16 6 12.4223 2.1762 -2.5419 17 1 12.3434 3.1976 -2.8841 18 6 13.6437 1.5188 -2.5950 19 7 13.6876 0.2051 -2.5262 20 14 15.2251 2.4985 -2.7639 21 1 15.8093 2.7313 -1.4186 22 1 16.1909 1.7394 -3.5982 23 1 14.9325 3.8036 -3.4090 24 6 9.9693 1.9228 -2.4885 25 6 9.1178 2.2112 -1.2481 26 6 3.5806 -1.1971 -0.0048 27 6 2.1981 -1.1971 0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6581 2.1325 -0.0005 32 1 4.1205 2.1326 -0.0010 33 1 6.1420 0.8898 -0.5143 34 1 6.1420 -0.8901 -0.5135 35 1 5.9254 -0.8891 1.9566 36 1 5.9254 0.8908 1.9559 37 1 9.4147 -0.2171 2.8727 38 1 7.8911 -1.0072 3.3447 39 1 8.0437 0.7634 3.4448 40 1 8.8036 1.8064 1.5423 41 1 8.7726 0.1223 -0.8492 42 1 10.9758 1.6182 0.6429 43 1 10.6081 -0.1155 0.8142 44 1 11.1276 -0.5021 -1.5495 45 1 12.5000 0.3417 -0.7869 46 1 14.5410 -0.2542 -2.5629 47 1 9.5184 1.1121 -3.0608 48 1 10.0284 2.8181 -3.1074 49 1 8.0898 2.4104 -1.5508 50 1 9.5180 3.0800 -0.7255 51 1 4.1206 -2.1324 -0.0089 52 1 1.6582 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813039.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:34 Heat of formation + Delta-G solvation = 18.629077 kcal Electronic energy + Delta-G solvation = -26466.632837 eV Core-core repulsion = 23044.072691 eV Total energy + Delta-G solvation = -3422.560146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.60827 -38.44963 -36.37028 -34.27018 -32.89088 -31.14635 -30.99689 -29.97062 -29.76679 -28.01847 -26.58906 -24.53612 -23.24965 -22.78959 -22.06652 -21.43100 -20.70141 -20.50598 -18.97603 -16.79794 -16.13960 -15.88840 -15.27121 -15.18297 -14.90456 -14.61826 -14.20259 -13.89970 -13.62524 -13.52897 -13.45188 -13.28844 -13.10774 -12.95628 -12.61408 -12.57606 -12.44375 -12.36603 -12.04397 -11.71999 -11.42532 -11.35065 -11.18805 -11.03523 -10.80084 -10.75775 -10.71002 -10.63054 -10.56766 -10.34019 -10.11385 -9.96065 -9.62835 -9.45297 -9.00218 -8.54568 -8.46558 -7.96257 -6.66587 -5.76711 -3.17116 1.26073 1.32580 3.38540 3.45755 3.47223 3.66135 4.41779 4.51639 4.65469 4.69335 4.79528 4.93843 5.01285 5.06576 5.21875 5.32816 5.34588 5.36164 5.41644 5.44605 5.48810 5.56884 5.59076 5.60326 5.70254 5.71765 5.75633 5.83293 5.93080 5.99944 6.04380 6.05763 6.13217 6.18759 6.21231 6.36307 6.37654 6.40752 6.48424 6.55197 6.59395 6.65535 6.70302 6.72152 6.86333 6.95819 7.04491 7.37195 7.47780 7.65665 7.74768 7.81796 8.46649 9.23546 9.87953 10.43916 11.31610 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024039 B = 0.002377 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.498036 B =11778.182989 C =12313.900783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.120 4.120 4 C -0.112 4.112 5 C -0.076 4.076 6 C -0.077 4.077 7 C -0.094 4.094 8 C 0.081 3.919 9 H 0.063 0.937 10 C -0.169 4.169 11 N -0.683 5.683 12 C 0.097 3.903 13 C -0.166 4.166 14 C 0.173 3.827 15 N -0.593 5.593 16 C -0.248 4.248 17 H 0.066 0.934 18 C -0.002 4.002 19 N -0.904 5.904 20 Si 0.901 3.099 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.279 1.279 24 C 0.144 3.856 25 C -0.117 4.117 26 C -0.118 4.118 27 C -0.121 4.121 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.118 0.882 32 H 0.123 0.877 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.338 0.662 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.043 0.957 44 H 0.015 0.985 45 H 0.088 0.912 46 H 0.253 0.747 47 H 0.015 0.985 48 H 0.053 0.947 49 H 0.054 0.946 50 H 0.055 0.945 51 H 0.119 0.881 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.183 -1.924 9.248 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.138 4.138 4 C -0.130 4.130 5 C -0.076 4.076 6 C -0.115 4.115 7 C -0.132 4.132 8 C -0.029 4.029 9 H 0.081 0.919 10 C -0.227 4.227 11 N -0.313 5.313 12 C -0.013 4.013 13 C -0.207 4.207 14 C 0.047 3.953 15 N -0.316 5.316 16 C -0.378 4.378 17 H 0.084 0.916 18 C -0.200 4.200 19 N -0.549 5.549 20 Si 0.732 3.268 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.018 3.982 25 C -0.156 4.156 26 C -0.136 4.136 27 C -0.139 4.139 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.136 0.864 32 H 0.141 0.859 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.156 0.844 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.033 0.967 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.033 0.967 48 H 0.072 0.928 49 H 0.073 0.927 50 H 0.074 0.926 51 H 0.137 0.863 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -22.615 -1.914 8.847 24.359 hybrid contribution 1.724 0.008 0.384 1.766 sum -20.891 -1.906 9.231 22.919 Atomic orbital electron populations 1.20761 0.91538 1.02485 1.02110 1.19873 0.95853 0.93345 1.00954 1.21016 0.94300 0.97326 1.01158 1.21104 0.93928 0.97985 0.99957 1.20069 0.96380 0.92891 0.98300 1.20579 0.89498 1.03528 0.97865 1.21552 0.94617 1.01285 0.95736 1.21601 0.94763 0.92528 0.94037 0.91912 1.22304 1.01268 1.01995 0.97129 1.60754 1.42989 1.17427 1.10139 1.21617 0.90932 0.98112 0.90611 1.22876 0.97178 1.00010 1.00649 1.20720 0.99313 0.89023 0.86266 1.44085 1.00498 1.39419 1.47557 1.19236 0.87002 0.94373 1.37141 0.91602 1.24999 0.98669 0.95186 1.01119 1.70044 1.24394 1.06065 1.54420 0.86275 0.83639 0.79393 0.77529 1.21585 1.21842 1.20390 1.20922 0.86425 0.97631 0.93268 1.21970 0.99043 0.97200 0.97427 1.21067 0.94023 0.97770 1.00699 1.20984 0.94238 0.97313 1.01347 0.91410 0.91798 0.91755 0.86398 0.85894 0.89553 0.91789 0.92643 0.91770 0.92511 0.92384 0.92303 0.84411 0.91446 0.92699 0.93844 0.96708 0.89407 0.93735 0.96666 0.92825 0.92737 0.92612 0.86284 0.86479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.01 36.00 0.36 -0.41 16 2 C -0.10 -0.96 5.88 -104.63 -0.62 -1.57 16 3 C -0.12 -1.19 9.70 -39.58 -0.38 -1.58 16 4 C -0.11 -1.22 9.70 -39.59 -0.38 -1.60 16 5 C -0.08 -0.86 5.13 -104.62 -0.54 -1.39 16 6 C -0.08 -0.89 5.23 -27.88 -0.15 -1.03 16 7 C -0.09 -1.02 4.87 -26.73 -0.13 -1.15 16 8 C 0.08 0.96 2.61 -67.71 -0.18 0.78 16 9 H 0.06 0.83 7.20 -51.93 -0.37 0.45 16 10 C -0.17 -1.78 9.02 37.16 0.33 -1.45 16 11 N -0.68 -9.18 5.63 -99.69 -0.56 -9.74 16 12 C 0.10 1.58 2.29 -67.67 -0.15 1.43 16 13 C -0.17 -3.12 5.33 -26.60 -0.14 -3.26 16 14 C 0.17 4.14 5.33 -3.71 -0.02 4.12 16 15 N -0.59 -14.92 3.00 -172.31 -0.52 -15.44 16 16 C -0.25 -6.86 9.60 -15.06 -0.14 -7.00 16 17 H 0.07 1.80 7.89 -52.48 -0.41 1.38 16 18 C 0.00 -0.05 4.90 -17.43 -0.09 -0.13 16 19 N -0.90 -26.44 11.13 55.49 0.62 -25.82 16 20 Si 0.90 21.88 29.59 -169.99 -5.03 16.85 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.14 3.05 6.51 -3.71 -0.02 3.03 16 25 C -0.12 -2.04 5.69 -26.62 -0.15 -2.20 16 26 C -0.12 -1.24 9.70 -39.58 -0.38 -1.62 16 27 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 31 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 33 H 0.09 1.11 7.70 -51.93 -0.40 0.71 16 34 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.64 8.07 -51.93 -0.42 0.22 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 40 H 0.34 4.51 7.83 -39.30 -0.31 4.20 16 41 H 0.07 1.17 7.47 -51.93 -0.39 0.78 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.04 0.75 7.99 -51.93 -0.42 0.34 16 44 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 2.37 5.95 -51.93 -0.31 2.06 16 46 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 49 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 51 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 52 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 406.13 15.07 6.12 6.12 Total: -1.00 -29.18 406.13 -12.29 -41.46 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -9.75 Total: 3.17 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -3.17 Total: -16.60 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: -0.46 Total: -51.00 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -29.18 -12.29 -41.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813039.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.094 kcal (2) G-P(sol) polarization free energy of solvation -29.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds