Wall clock time and date at job start Tue Mar 31 2020 12:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38238 * 119.99957 * 2 1 4 4 C 1.38229 * 120.00114 * 180.02562 * 3 2 1 5 5 C 1.38236 * 120.00065 * 359.95202 * 4 3 2 6 6 C 1.50705 * 120.00209 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46972 * 90.00138 * 6 5 4 8 8 C 1.52999 * 109.46830 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.47233 * 304.99743 * 8 7 6 10 10 C 1.53003 * 109.46826 * 184.99776 * 8 7 6 11 11 N 1.46904 * 109.47505 * 64.99966 * 8 7 6 12 12 C 1.46904 * 110.99824 * 238.96126 * 11 8 7 13 13 C 1.53045 * 109.45357 * 274.52506 * 12 11 8 14 14 C 1.53201 * 109.30731 * 178.61345 * 13 12 11 15 15 N 1.46924 * 108.77154 * 54.63912 * 14 13 12 16 16 C 1.36939 * 120.62953 * 126.37158 * 15 14 13 17 17 H 1.08010 * 119.99414 * 206.33330 * 16 15 14 18 18 C 1.38809 * 120.00257 * 26.33196 * 16 15 14 19 19 N 1.31620 * 120.00145 * 18.11664 * 18 16 15 20 20 Si 1.86797 * 119.99930 * 198.11516 * 18 16 15 21 21 H 1.48504 * 109.47248 * 94.96229 * 20 18 16 22 22 H 1.48498 * 109.46933 * 214.95800 * 20 18 16 23 23 H 1.48499 * 109.47378 * 334.95995 * 20 18 16 24 24 C 1.46934 * 118.74028 * 306.38433 * 15 14 13 25 25 C 1.53031 * 109.45901 * 154.45806 * 12 11 8 26 26 C 1.38235 * 120.00059 * 0.27618 * 5 4 3 27 27 C 1.38233 * 120.00059 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47289 * 90.00278 * 1 2 3 29 29 H 1.08995 * 109.47200 * 210.00418 * 1 2 3 30 30 H 1.09005 * 109.47240 * 330.00339 * 1 2 3 31 31 H 1.08004 * 120.00009 * 359.96985 * 3 2 1 32 32 H 1.08006 * 120.00233 * 179.97438 * 4 3 2 33 33 H 1.08996 * 109.47112 * 329.99857 * 6 5 4 34 34 H 1.08996 * 109.47054 * 209.99742 * 6 5 4 35 35 H 1.08996 * 109.47432 * 59.99915 * 7 6 5 36 36 H 1.08996 * 109.46908 * 299.99693 * 7 6 5 37 37 H 1.09004 * 109.46650 * 174.75716 * 10 8 7 38 38 H 1.08999 * 109.46990 * 54.76182 * 10 8 7 39 39 H 1.08997 * 109.47341 * 294.75685 * 10 8 7 40 40 H 1.00893 * 111.00274 * 115.00294 * 11 8 7 41 41 H 1.09001 * 109.45968 * 34.48040 * 12 11 8 42 42 H 1.08994 * 109.49691 * 298.56268 * 13 12 11 43 43 H 1.08997 * 109.49983 * 58.66804 * 13 12 11 44 44 H 1.08997 * 109.58636 * 294.84529 * 14 13 12 45 45 H 1.08999 * 109.58143 * 174.42216 * 14 13 12 46 46 H 0.96991 * 120.00048 * 180.02562 * 19 18 16 47 47 H 1.08998 * 109.58419 * 293.82771 * 24 15 14 48 48 H 1.08996 * 109.70156 * 173.46881 * 24 15 14 49 49 H 1.09001 * 109.50227 * 301.33295 * 25 12 11 50 50 H 1.09002 * 109.49638 * 61.39929 * 25 12 11 51 51 H 1.08001 * 120.00135 * 179.72747 * 26 5 4 52 52 H 1.07993 * 120.00025 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0001 6 6 5.7787 0.0001 -0.0001 7 6 6.2887 0.0006 1.4424 8 6 7.8187 0.0013 1.4424 9 1 8.1824 -0.8405 0.8532 10 6 8.3287 -0.1239 2.8795 11 7 8.3079 1.2566 0.8568 12 6 9.1502 0.9962 -0.3183 13 6 10.5890 0.7356 0.1336 14 6 11.4572 0.4303 -1.0912 15 7 11.3173 1.5298 -2.0557 16 6 12.4223 2.1762 -2.5419 17 1 12.3434 3.1976 -2.8841 18 6 13.6437 1.5188 -2.5950 19 7 13.6876 0.2051 -2.5262 20 14 15.2251 2.4985 -2.7639 21 1 15.8093 2.7313 -1.4186 22 1 16.1909 1.7394 -3.5982 23 1 14.9325 3.8036 -3.4090 24 6 9.9693 1.9228 -2.4885 25 6 9.1178 2.2112 -1.2481 26 6 3.5806 -1.1971 -0.0048 27 6 2.1981 -1.1971 0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6581 2.1325 -0.0005 32 1 4.1205 2.1326 -0.0010 33 1 6.1420 0.8898 -0.5143 34 1 6.1420 -0.8901 -0.5135 35 1 5.9254 -0.8891 1.9566 36 1 5.9254 0.8908 1.9559 37 1 9.4147 -0.2171 2.8727 38 1 7.8911 -1.0072 3.3447 39 1 8.0437 0.7634 3.4448 40 1 8.8036 1.8064 1.5423 41 1 8.7726 0.1223 -0.8492 42 1 10.9758 1.6182 0.6429 43 1 10.6081 -0.1155 0.8142 44 1 11.1276 -0.5021 -1.5495 45 1 12.5000 0.3417 -0.7869 46 1 14.5410 -0.2542 -2.5629 47 1 9.5184 1.1121 -3.0608 48 1 10.0284 2.8181 -3.1074 49 1 8.0898 2.4104 -1.5508 50 1 9.5180 3.0800 -0.7255 51 1 4.1206 -2.1324 -0.0089 52 1 1.6582 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610813039.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:33 Heat of formation + Delta-G solvation = 5.290483 kcal Electronic energy + Delta-G solvation = -26467.211242 eV Core-core repulsion = 23044.072691 eV Total energy + Delta-G solvation = -3423.138551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.40548 -39.80205 -37.74565 -35.42005 -34.33541 -32.67386 -31.74006 -31.48967 -30.96206 -29.43058 -27.31038 -26.40540 -24.11002 -23.75444 -23.53622 -23.10123 -21.69858 -21.36664 -20.54596 -18.74739 -17.00587 -16.89038 -16.72597 -16.25015 -15.98363 -15.90644 -15.37576 -15.22564 -15.18044 -14.79522 -14.54008 -14.37334 -14.20249 -14.09107 -13.96031 -13.69464 -13.43174 -13.23419 -13.03875 -12.96967 -12.82573 -12.60698 -12.56483 -12.42466 -12.20952 -12.10632 -11.98107 -11.89818 -11.84511 -11.73614 -11.58423 -11.46615 -11.29763 -11.00723 -10.56732 -9.76337 -9.35218 -9.13753 -8.70213 -7.87934 -5.31824 0.50046 0.56368 1.45342 1.46558 1.56131 2.50436 2.90031 3.20951 3.31230 3.69905 3.83288 3.96773 3.99130 4.09488 4.16951 4.19823 4.23036 4.31282 4.40330 4.46590 4.52076 4.56125 4.64922 4.68467 4.71344 4.78842 4.82901 4.86443 4.86674 4.88401 4.90455 4.99006 5.05115 5.05945 5.14837 5.22262 5.26623 5.29503 5.29650 5.34440 5.38140 5.41003 5.50973 5.52103 5.60354 5.63501 5.72539 5.76623 5.86740 6.21654 6.26744 6.37807 6.60823 7.13740 7.86096 8.36968 9.18003 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024039 B = 0.002377 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.498036 B =11778.182989 C =12313.900783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.107 4.107 3 C -0.129 4.129 4 C -0.125 4.125 5 C -0.091 4.091 6 C -0.071 4.071 7 C -0.084 4.084 8 C 0.081 3.919 9 H 0.051 0.949 10 C -0.164 4.164 11 N -0.673 5.673 12 C 0.111 3.889 13 C -0.150 4.150 14 C 0.179 3.821 15 N -0.610 5.610 16 C -0.259 4.259 17 H 0.067 0.933 18 C -0.055 4.055 19 N -0.936 5.936 20 Si 0.967 3.033 21 H -0.286 1.286 22 H -0.295 1.295 23 H -0.267 1.267 24 C 0.140 3.860 25 C -0.103 4.103 26 C -0.129 4.129 27 C -0.128 4.128 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.134 0.866 32 H 0.124 0.876 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.342 0.658 41 H 0.060 0.940 42 H 0.050 0.950 43 H 0.058 0.942 44 H -0.008 1.008 45 H 0.053 0.947 46 H 0.249 0.751 47 H 0.011 0.989 48 H 0.053 0.947 49 H 0.076 0.924 50 H 0.052 0.948 51 H 0.127 0.873 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.114 -1.278 10.433 26.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.107 4.107 3 C -0.147 4.147 4 C -0.143 4.143 5 C -0.091 4.091 6 C -0.108 4.108 7 C -0.122 4.122 8 C -0.029 4.029 9 H 0.069 0.931 10 C -0.222 4.222 11 N -0.303 5.303 12 C 0.001 3.999 13 C -0.190 4.190 14 C 0.053 3.947 15 N -0.334 5.334 16 C -0.389 4.389 17 H 0.085 0.915 18 C -0.250 4.250 19 N -0.583 5.583 20 Si 0.795 3.205 21 H -0.213 1.213 22 H -0.222 1.222 23 H -0.192 1.192 24 C 0.014 3.986 25 C -0.142 4.142 26 C -0.147 4.147 27 C -0.146 4.146 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.152 0.848 32 H 0.142 0.858 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.161 0.839 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.010 0.990 45 H 0.071 0.929 46 H 0.058 0.942 47 H 0.029 0.971 48 H 0.072 0.928 49 H 0.095 0.905 50 H 0.070 0.930 51 H 0.145 0.855 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -24.581 -1.251 10.044 26.583 hybrid contribution 2.237 -0.223 -0.019 2.248 sum -22.345 -1.474 10.025 24.535 Atomic orbital electron populations 1.20805 0.89630 1.03482 1.02839 1.20245 0.97393 0.93093 0.99930 1.21276 0.94111 0.98381 1.00895 1.21237 0.94608 0.97984 1.00494 1.20100 0.96147 0.93446 0.99447 1.20470 0.89963 1.02416 0.97958 1.21457 0.93553 1.01707 0.95469 1.21649 0.95439 0.91143 0.94664 0.93094 1.22253 1.00711 1.03111 0.96159 1.60714 1.41675 1.18343 1.09575 1.21350 0.89662 0.97289 0.91575 1.22673 0.97693 1.00347 0.98312 1.20527 0.98249 0.88051 0.87884 1.44357 1.01481 1.39441 1.48143 1.19557 0.88139 0.94607 1.36625 0.91535 1.25771 1.01632 0.96069 1.01539 1.70200 1.24705 1.07533 1.55855 0.85246 0.79599 0.78295 0.77324 1.21336 1.22208 1.19202 1.21076 0.85166 0.97283 0.95062 1.21784 0.99271 0.97351 0.95810 1.21251 0.94673 0.97886 1.00859 1.21272 0.94110 0.98351 1.00902 0.90706 0.90775 0.90856 0.84817 0.85778 0.91049 0.92401 0.91618 0.91824 0.93341 0.91032 0.91416 0.83905 0.92144 0.93073 0.92333 0.99037 0.92889 0.94181 0.97124 0.92834 0.90525 0.92955 0.85530 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 71.23 0.71 -0.54 16 2 C -0.11 -1.83 5.88 -19.87 -0.12 -1.95 16 3 C -0.13 -2.37 9.70 22.27 0.22 -2.15 16 4 C -0.13 -2.61 9.70 22.27 0.22 -2.39 16 5 C -0.09 -1.97 5.13 -19.86 -0.10 -2.07 16 6 C -0.07 -1.56 5.23 29.85 0.16 -1.40 16 7 C -0.08 -1.68 4.87 30.59 0.15 -1.53 16 8 C 0.08 1.78 2.61 44.92 0.12 1.90 16 9 H 0.05 1.28 7.20 -2.39 -0.02 1.26 16 10 C -0.16 -3.11 9.02 71.98 0.65 -2.46 16 11 N -0.67 -16.96 5.63 -469.32 -2.64 -19.60 16 12 C 0.11 3.55 2.29 44.94 0.10 3.65 16 13 C -0.15 -5.58 5.33 30.68 0.16 -5.41 16 14 C 0.18 8.82 5.33 86.37 0.46 9.28 16 15 N -0.61 -31.29 3.00 -699.07 -2.10 -33.39 16 16 C -0.26 -14.53 9.60 84.03 0.81 -13.72 16 17 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 18 C -0.06 -3.14 4.90 84.86 0.42 -2.72 16 19 N -0.94 -56.37 11.13 21.65 0.24 -56.13 16 20 Si 0.97 45.58 29.59 68.60 2.03 47.61 16 21 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 C 0.14 5.93 6.51 86.36 0.56 6.49 16 25 C -0.10 -3.48 5.69 30.67 0.17 -3.31 16 26 C -0.13 -2.56 9.70 22.27 0.22 -2.35 16 27 C -0.13 -2.28 9.70 22.27 0.22 -2.07 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.69 8.08 -2.39 -0.02 0.67 16 30 H 0.07 0.70 8.09 -2.38 -0.02 0.68 16 31 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.12 2.44 8.06 -2.91 -0.02 2.42 16 33 H 0.07 1.77 7.70 -2.39 -0.02 1.76 16 34 H 0.06 1.32 8.08 -2.39 -0.02 1.30 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.05 1.00 8.07 -2.38 -0.02 0.98 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 40 H 0.34 8.39 7.83 -89.70 -0.70 7.69 16 41 H 0.06 2.05 7.47 -2.39 -0.02 2.04 16 42 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.06 1.99 7.99 -2.39 -0.02 1.97 16 44 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 45 H 0.05 2.97 5.95 -2.39 -0.01 2.95 16 46 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 47 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.05 2.23 7.93 -2.39 -0.02 2.21 16 49 H 0.08 2.29 8.14 -2.39 -0.02 2.28 16 50 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 52 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -63.54 406.13 2.80 -60.74 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 0.15 Total: 23.53 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 5.12 Total: -22.76 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -4.50 Total: -109.12 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -63.54 2.80 -60.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813039.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.033 kcal (2) G-P(sol) polarization free energy of solvation -63.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds