Wall clock time and date at job start Tue Mar 31 2020 12:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38257 * 119.99885 * 2 1 4 4 C 1.38210 * 120.00087 * 179.80793 * 3 2 1 5 5 C 1.38260 * 119.99739 * 0.41901 * 4 3 2 6 6 C 1.38217 * 119.99959 * 359.80775 * 5 4 3 7 7 C 1.50696 * 119.99602 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.47379 * 270.02170 * 7 6 5 9 9 C 1.53006 * 109.47625 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.46421 * 55.00138 * 9 8 7 11 11 C 1.52996 * 109.47478 * 175.00269 * 9 8 7 12 12 N 1.46904 * 109.46956 * 295.00692 * 9 8 7 13 13 C 1.46903 * 110.99566 * 154.99616 * 12 9 8 14 14 C 1.53039 * 109.45887 * 275.02125 * 13 12 9 15 15 C 1.53196 * 109.31042 * 178.60479 * 14 13 12 16 16 N 1.46919 * 108.76645 * 54.65748 * 15 14 13 17 17 C 1.36939 * 120.63343 * 126.35805 * 16 15 14 18 18 H 1.07993 * 120.00412 * 208.02662 * 17 16 15 19 19 C 1.38812 * 119.99527 * 28.02656 * 17 16 15 20 20 N 1.31621 * 120.00125 * 17.51885 * 19 17 16 21 21 Si 1.86805 * 119.99897 * 197.52581 * 19 17 16 22 22 H 1.48496 * 109.47112 * 94.06428 * 21 19 17 23 23 H 1.48503 * 109.46800 * 214.06428 * 21 19 17 24 24 H 1.48497 * 109.46923 * 334.06168 * 21 19 17 25 25 C 1.46927 * 118.74216 * 306.38421 * 16 15 14 26 26 C 1.53041 * 109.45657 * 154.97109 * 13 12 9 27 27 C 1.38213 * 119.99962 * 180.27022 * 2 1 3 28 28 H 1.09005 * 109.47206 * 269.72963 * 1 2 3 29 29 H 1.09003 * 109.47240 * 29.73003 * 1 2 3 30 30 H 1.09001 * 109.47172 * 149.72835 * 1 2 3 31 31 H 1.08000 * 120.00196 * 359.97438 * 3 2 1 32 32 H 1.08000 * 120.00377 * 180.21055 * 4 3 2 33 33 H 1.08000 * 119.99826 * 179.79211 * 5 4 3 34 34 H 1.08996 * 109.47789 * 30.02722 * 7 6 5 35 35 H 1.09004 * 109.46985 * 150.02755 * 7 6 5 36 36 H 1.08998 * 109.47470 * 300.00569 * 8 7 6 37 37 H 1.09001 * 109.47032 * 60.00576 * 8 7 6 38 38 H 1.08998 * 109.47315 * 179.97438 * 11 9 8 39 39 H 1.09005 * 109.47223 * 300.00239 * 11 9 8 40 40 H 1.09007 * 109.46950 * 60.00227 * 11 9 8 41 41 H 1.00901 * 111.00060 * 31.04394 * 12 9 8 42 42 H 1.08998 * 109.46419 * 35.00025 * 13 12 9 43 43 H 1.09000 * 109.49977 * 298.57013 * 14 13 12 44 44 H 1.09000 * 109.49653 * 58.66579 * 14 13 12 45 45 H 1.09004 * 109.59381 * 294.86851 * 15 14 13 46 46 H 1.09002 * 109.69918 * 174.50886 * 15 14 13 47 47 H 0.97000 * 119.99674 * 180.02562 * 20 19 17 48 48 H 1.08995 * 109.58345 * 293.82538 * 25 16 15 49 49 H 1.08989 * 109.70951 * 173.46062 * 25 16 15 50 50 H 1.09003 * 109.49748 * 301.33922 * 26 13 12 51 51 H 1.08999 * 109.49648 * 61.43195 * 26 13 12 52 52 H 1.07999 * 120.00021 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0040 5 6 4.2717 0.0001 -0.0007 6 6 3.5806 -1.1969 -0.0055 7 6 4.3342 -2.5019 -0.0112 8 6 4.5891 -2.9373 -1.4556 9 6 5.3537 -4.2626 -1.4615 10 1 4.8059 -5.0006 -0.8754 11 6 5.4998 -4.7608 -2.9007 12 7 6.6856 -4.0622 -0.8750 13 6 7.2109 -5.3171 -0.3206 14 6 6.6835 -5.5054 1.1036 15 6 7.2051 -6.8316 1.6657 16 7 8.6703 -6.8470 1.5582 17 6 9.4480 -7.0987 2.6568 18 1 10.4450 -6.6883 2.7182 19 6 8.9547 -7.8816 3.6916 20 7 7.9101 -8.6565 3.4902 21 14 9.7735 -7.8351 5.3700 22 1 9.0777 -6.8471 6.2330 23 1 9.6967 -9.1797 5.9956 24 1 11.1971 -7.4416 5.2155 25 6 9.2854 -6.5865 0.2495 26 6 8.7402 -5.2632 -0.2969 27 6 2.1981 -1.1969 -0.0056 28 1 -0.3634 -0.0048 1.0277 29 1 -0.3634 0.8924 -0.5096 30 1 -0.3633 -0.8875 -0.5180 31 1 1.6583 2.1327 -0.0004 32 1 4.1204 2.1327 0.0074 33 1 5.3517 0.0001 -0.0010 34 1 5.2866 -2.3739 0.5032 35 1 3.7451 -3.2639 0.4993 36 1 3.6368 -3.0654 -1.9700 37 1 5.1782 -2.1754 -1.9661 38 1 6.0449 -5.7047 -2.9049 39 1 4.5115 -4.9095 -3.3358 40 1 6.0476 -4.0228 -3.4868 41 1 6.6665 -3.3370 -0.1737 42 1 6.8866 -6.1523 -0.9414 43 1 7.0284 -4.6834 1.7310 44 1 5.5937 -5.5201 1.0891 45 1 6.7880 -7.6604 1.0937 46 1 6.9145 -6.9269 2.7120 47 1 7.5652 -9.2032 4.2134 48 1 9.0379 -7.3952 -0.4380 49 1 10.3676 -6.5183 0.3591 50 1 9.1144 -5.1054 -1.3084 51 1 9.0654 -4.4435 0.3438 52 1 1.6581 -2.1322 -0.0096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813667.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:43 Heat of formation + Delta-G solvation = 18.531812 kcal Electronic energy + Delta-G solvation = -26506.809651 eV Core-core repulsion = 23084.245287 eV Total energy + Delta-G solvation = -3422.564364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.74148 -38.47235 -36.43553 -34.10053 -32.89884 -32.13800 -30.85618 -29.76167 -28.79013 -28.17676 -27.09519 -24.73259 -24.03074 -22.18331 -22.10937 -21.44491 -20.61714 -20.07560 -19.12477 -16.84066 -16.65642 -15.97025 -15.47371 -15.25381 -14.87716 -14.65911 -14.17599 -13.87089 -13.73176 -13.48135 -13.41095 -13.27332 -13.16766 -12.97001 -12.66008 -12.59167 -12.46710 -12.24380 -12.08313 -11.69663 -11.46703 -11.42492 -11.26633 -11.11259 -11.02380 -10.80076 -10.72782 -10.70353 -10.41152 -10.35172 -10.11092 -9.96612 -9.63710 -9.46731 -8.94582 -8.72561 -8.47155 -7.96885 -6.63999 -5.76603 -3.18414 1.18423 1.22075 3.38809 3.45907 3.47348 3.56856 4.42052 4.49019 4.51870 4.59327 4.69414 4.94176 4.98210 5.00261 5.08259 5.15770 5.31381 5.36079 5.36793 5.42099 5.48024 5.53371 5.54288 5.59821 5.65595 5.67373 5.78120 5.79312 5.87488 5.95461 5.98013 6.01737 6.04062 6.17423 6.22634 6.30897 6.36742 6.37752 6.39494 6.50301 6.57354 6.60525 6.68490 6.73067 6.85868 6.87823 7.05404 7.36437 7.47548 7.64738 7.75496 7.82465 8.47904 9.24119 9.88085 10.45165 11.31874 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015008 B = 0.002656 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.207307 B =10539.306296 C =11454.187333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.130 4.130 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.069 4.069 7 C -0.087 4.087 8 C -0.111 4.111 9 C 0.081 3.919 10 H 0.044 0.956 11 C -0.138 4.138 12 N -0.685 5.685 13 C 0.095 3.905 14 C -0.166 4.166 15 C 0.175 3.825 16 N -0.592 5.592 17 C -0.250 4.250 18 H 0.065 0.935 19 C 0.000 4.000 20 N -0.904 5.904 21 Si 0.901 3.099 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.278 1.278 25 C 0.145 3.855 26 C -0.117 4.117 27 C -0.119 4.119 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.058 0.942 41 H 0.336 0.664 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.043 0.957 45 H 0.015 0.985 46 H 0.085 0.915 47 H 0.253 0.747 48 H 0.015 0.985 49 H 0.054 0.946 50 H 0.054 0.946 51 H 0.055 0.945 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.820 17.007 -10.439 23.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.148 4.148 4 C -0.133 4.133 5 C -0.140 4.140 6 C -0.069 4.069 7 C -0.125 4.125 8 C -0.149 4.149 9 C -0.028 4.028 10 H 0.062 0.938 11 C -0.195 4.195 12 N -0.317 5.317 13 C -0.014 4.014 14 C -0.206 4.206 15 C 0.049 3.951 16 N -0.315 5.315 17 C -0.379 4.379 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.548 5.548 21 Si 0.731 3.269 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.018 3.982 26 C -0.157 4.157 27 C -0.137 4.137 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.155 0.845 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.034 0.966 46 H 0.103 0.897 47 H 0.063 0.937 48 H 0.033 0.967 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.074 0.926 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.554 16.814 -10.936 23.662 hybrid contribution -0.220 -0.100 1.784 1.801 sum -12.774 16.714 -9.152 22.941 Atomic orbital electron populations 1.20793 0.91349 1.02659 1.02300 1.19906 0.95970 0.93213 0.99618 1.20990 0.94315 0.97356 1.02133 1.21124 0.94276 0.98002 0.99888 1.21088 1.00016 0.91968 1.00934 1.19906 0.93630 0.95145 0.98258 1.20713 1.00068 0.93804 0.97866 1.21735 1.00255 0.97322 0.95590 1.21503 0.89555 0.95754 0.96031 0.93775 1.21773 1.00685 1.01414 0.95675 1.60821 1.23139 1.09241 1.38478 1.21522 0.95518 0.90504 0.93866 1.22840 0.98379 1.02509 0.96921 1.20674 0.83253 0.90155 1.01041 1.44060 1.01494 1.82154 1.03816 1.19217 0.98751 1.24570 0.95404 0.91683 1.25040 0.98777 0.96254 0.99717 1.70046 1.26697 1.26830 1.31265 0.86286 0.79100 0.76886 0.84602 1.21543 1.21807 1.20374 1.20924 0.96422 0.93016 0.87867 1.21973 0.94136 0.99791 0.99761 1.20941 0.93639 0.97533 1.01588 0.91221 0.91675 0.91562 0.86419 0.86187 0.85981 0.90682 0.90940 0.91534 0.91060 0.92639 0.93135 0.92302 0.84466 0.91384 0.92723 0.93855 0.96649 0.89689 0.93724 0.96666 0.92789 0.92687 0.92639 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 2 C -0.09 -0.82 5.88 -104.62 -0.62 -1.43 16 3 C -0.13 -1.18 9.70 -39.58 -0.38 -1.56 16 4 C -0.11 -1.07 10.05 -39.58 -0.40 -1.47 16 5 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 6 C -0.07 -0.73 5.13 -104.63 -0.54 -1.27 16 7 C -0.09 -0.92 5.17 -27.89 -0.14 -1.06 16 8 C -0.11 -1.16 4.79 -26.73 -0.13 -1.28 16 9 C 0.08 1.00 2.46 -67.71 -0.17 0.83 16 10 H 0.04 0.60 7.11 -51.93 -0.37 0.23 16 11 C -0.14 -1.60 9.40 37.16 0.35 -1.25 16 12 N -0.68 -9.59 6.06 -99.69 -0.60 -10.20 16 13 C 0.10 1.61 2.24 -67.67 -0.15 1.46 16 14 C -0.17 -3.15 5.31 -26.61 -0.14 -3.29 16 15 C 0.18 4.22 5.31 -3.71 -0.02 4.20 16 16 N -0.59 -15.02 2.99 -172.32 -0.52 -15.54 16 17 C -0.25 -6.94 9.58 -15.06 -0.14 -7.08 16 18 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 19 C 0.00 0.01 4.90 -17.43 -0.09 -0.07 16 20 N -0.90 -26.52 11.22 55.49 0.62 -25.90 16 21 Si 0.90 21.92 29.59 -169.99 -5.03 16.89 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.14 3.10 6.51 -3.71 -0.02 3.07 16 26 C -0.12 -2.10 5.69 -26.61 -0.15 -2.25 16 27 C -0.12 -1.21 9.36 -39.59 -0.37 -1.58 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.07 0.83 6.37 -51.93 -0.33 0.49 16 35 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.71 7.43 -51.93 -0.39 0.32 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.34 4.58 6.22 -39.29 -0.24 4.33 16 42 H 0.07 1.22 7.11 -51.93 -0.37 0.85 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.04 0.76 7.41 -51.93 -0.38 0.37 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 2.30 6.06 -51.93 -0.31 1.98 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.05 1.13 7.94 -51.94 -0.41 0.72 16 50 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 51 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 52 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 402.13 15.07 6.06 6.06 Total: -1.00 -29.61 402.13 -12.14 -41.75 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -9.54 Total: 3.04 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -3.14 Total: -16.11 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.50 Total: -51.63 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.61 -12.14 -41.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813667.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.283 kcal (2) G-P(sol) polarization free energy of solvation -29.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds