Wall clock time and date at job start Tue Mar 31 2020 12:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38257 * 119.99885 * 2 1 4 4 C 1.38210 * 120.00087 * 179.80793 * 3 2 1 5 5 C 1.38260 * 119.99739 * 0.41901 * 4 3 2 6 6 C 1.38217 * 119.99959 * 359.80775 * 5 4 3 7 7 C 1.50696 * 119.99602 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.47379 * 270.02170 * 7 6 5 9 9 C 1.53006 * 109.47625 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.46421 * 55.00138 * 9 8 7 11 11 C 1.52996 * 109.47478 * 175.00269 * 9 8 7 12 12 N 1.46904 * 109.46956 * 295.00692 * 9 8 7 13 13 C 1.46903 * 110.99566 * 154.99616 * 12 9 8 14 14 C 1.53039 * 109.45887 * 275.02125 * 13 12 9 15 15 C 1.53196 * 109.31042 * 178.60479 * 14 13 12 16 16 N 1.46919 * 108.76645 * 54.65748 * 15 14 13 17 17 C 1.36939 * 120.63343 * 126.35805 * 16 15 14 18 18 H 1.07993 * 120.00412 * 208.02662 * 17 16 15 19 19 C 1.38812 * 119.99527 * 28.02656 * 17 16 15 20 20 N 1.31621 * 120.00125 * 17.51885 * 19 17 16 21 21 Si 1.86805 * 119.99897 * 197.52581 * 19 17 16 22 22 H 1.48496 * 109.47112 * 94.06428 * 21 19 17 23 23 H 1.48503 * 109.46800 * 214.06428 * 21 19 17 24 24 H 1.48497 * 109.46923 * 334.06168 * 21 19 17 25 25 C 1.46927 * 118.74216 * 306.38421 * 16 15 14 26 26 C 1.53041 * 109.45657 * 154.97109 * 13 12 9 27 27 C 1.38213 * 119.99962 * 180.27022 * 2 1 3 28 28 H 1.09005 * 109.47206 * 269.72963 * 1 2 3 29 29 H 1.09003 * 109.47240 * 29.73003 * 1 2 3 30 30 H 1.09001 * 109.47172 * 149.72835 * 1 2 3 31 31 H 1.08000 * 120.00196 * 359.97438 * 3 2 1 32 32 H 1.08000 * 120.00377 * 180.21055 * 4 3 2 33 33 H 1.08000 * 119.99826 * 179.79211 * 5 4 3 34 34 H 1.08996 * 109.47789 * 30.02722 * 7 6 5 35 35 H 1.09004 * 109.46985 * 150.02755 * 7 6 5 36 36 H 1.08998 * 109.47470 * 300.00569 * 8 7 6 37 37 H 1.09001 * 109.47032 * 60.00576 * 8 7 6 38 38 H 1.08998 * 109.47315 * 179.97438 * 11 9 8 39 39 H 1.09005 * 109.47223 * 300.00239 * 11 9 8 40 40 H 1.09007 * 109.46950 * 60.00227 * 11 9 8 41 41 H 1.00901 * 111.00060 * 31.04394 * 12 9 8 42 42 H 1.08998 * 109.46419 * 35.00025 * 13 12 9 43 43 H 1.09000 * 109.49977 * 298.57013 * 14 13 12 44 44 H 1.09000 * 109.49653 * 58.66579 * 14 13 12 45 45 H 1.09004 * 109.59381 * 294.86851 * 15 14 13 46 46 H 1.09002 * 109.69918 * 174.50886 * 15 14 13 47 47 H 0.97000 * 119.99674 * 180.02562 * 20 19 17 48 48 H 1.08995 * 109.58345 * 293.82538 * 25 16 15 49 49 H 1.08989 * 109.70951 * 173.46062 * 25 16 15 50 50 H 1.09003 * 109.49748 * 301.33922 * 26 13 12 51 51 H 1.08999 * 109.49648 * 61.43195 * 26 13 12 52 52 H 1.07999 * 120.00021 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0040 5 6 4.2717 0.0001 -0.0007 6 6 3.5806 -1.1969 -0.0055 7 6 4.3342 -2.5019 -0.0112 8 6 4.5891 -2.9373 -1.4556 9 6 5.3537 -4.2626 -1.4615 10 1 4.8059 -5.0006 -0.8754 11 6 5.4998 -4.7608 -2.9007 12 7 6.6856 -4.0622 -0.8750 13 6 7.2109 -5.3171 -0.3206 14 6 6.6835 -5.5054 1.1036 15 6 7.2051 -6.8316 1.6657 16 7 8.6703 -6.8470 1.5582 17 6 9.4480 -7.0987 2.6568 18 1 10.4450 -6.6883 2.7182 19 6 8.9547 -7.8816 3.6916 20 7 7.9101 -8.6565 3.4902 21 14 9.7735 -7.8351 5.3700 22 1 9.0777 -6.8471 6.2330 23 1 9.6967 -9.1797 5.9956 24 1 11.1971 -7.4416 5.2155 25 6 9.2854 -6.5865 0.2495 26 6 8.7402 -5.2632 -0.2969 27 6 2.1981 -1.1969 -0.0056 28 1 -0.3634 -0.0048 1.0277 29 1 -0.3634 0.8924 -0.5096 30 1 -0.3633 -0.8875 -0.5180 31 1 1.6583 2.1327 -0.0004 32 1 4.1204 2.1327 0.0074 33 1 5.3517 0.0001 -0.0010 34 1 5.2866 -2.3739 0.5032 35 1 3.7451 -3.2639 0.4993 36 1 3.6368 -3.0654 -1.9700 37 1 5.1782 -2.1754 -1.9661 38 1 6.0449 -5.7047 -2.9049 39 1 4.5115 -4.9095 -3.3358 40 1 6.0476 -4.0228 -3.4868 41 1 6.6665 -3.3370 -0.1737 42 1 6.8866 -6.1523 -0.9414 43 1 7.0284 -4.6834 1.7310 44 1 5.5937 -5.5201 1.0891 45 1 6.7880 -7.6604 1.0937 46 1 6.9145 -6.9269 2.7120 47 1 7.5652 -9.2032 4.2134 48 1 9.0379 -7.3952 -0.4380 49 1 10.3676 -6.5183 0.3591 50 1 9.1144 -5.1054 -1.3084 51 1 9.0654 -4.4435 0.3438 52 1 1.6581 -2.1322 -0.0096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610813667.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:42 Heat of formation + Delta-G solvation = 4.671265 kcal Electronic energy + Delta-G solvation = -26507.410689 eV Core-core repulsion = 23084.245287 eV Total energy + Delta-G solvation = -3423.165402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.50614 -39.82112 -37.81760 -35.36115 -34.15471 -33.09686 -32.35192 -31.49378 -29.80810 -29.48658 -27.71227 -26.50893 -25.03001 -23.80267 -23.19024 -22.81695 -21.47137 -21.03569 -20.74232 -18.78400 -17.36734 -17.03742 -16.77523 -16.50044 -16.16449 -15.71856 -15.38433 -15.28167 -15.12229 -14.80128 -14.56734 -14.35443 -14.27650 -14.04547 -13.91869 -13.84009 -13.30632 -13.15145 -13.03968 -13.00202 -12.92065 -12.63064 -12.57338 -12.47243 -12.29106 -12.09608 -12.06090 -12.01353 -11.87848 -11.74357 -11.64701 -11.40336 -11.34247 -11.09686 -10.57313 -9.66579 -9.44382 -9.23893 -8.69125 -7.88657 -5.34061 0.46676 0.50533 1.45164 1.46417 1.55907 2.50047 2.85264 3.19684 3.30130 3.68967 3.69394 3.88894 3.97898 4.04859 4.10320 4.19179 4.22393 4.25909 4.33730 4.43824 4.51164 4.52190 4.57218 4.64427 4.70535 4.73943 4.80174 4.82429 4.84008 4.84872 4.86855 4.94920 4.98730 5.04950 5.08598 5.18901 5.23057 5.24175 5.29499 5.31662 5.35030 5.38282 5.47027 5.49869 5.60504 5.63313 5.70516 5.71311 5.76569 6.16871 6.22764 6.38018 6.57790 7.13558 7.85243 8.37242 9.17547 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015008 B = 0.002656 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.207307 B =10539.306296 C =11454.187333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.137 4.137 4 C -0.121 4.121 5 C -0.137 4.137 6 C -0.082 4.082 7 C -0.082 4.082 8 C -0.099 4.099 9 C 0.081 3.919 10 H 0.033 0.967 11 C -0.135 4.135 12 N -0.676 5.676 13 C 0.108 3.892 14 C -0.149 4.149 15 C 0.182 3.818 16 N -0.610 5.610 17 C -0.261 4.261 18 H 0.066 0.934 19 C -0.053 4.053 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.286 1.286 23 H -0.294 1.294 24 H -0.267 1.267 25 C 0.140 3.860 26 C -0.104 4.104 27 C -0.134 4.134 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.127 0.873 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.041 0.959 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.340 0.660 42 H 0.061 0.939 43 H 0.050 0.950 44 H 0.057 0.943 45 H -0.008 1.008 46 H 0.050 0.950 47 H 0.249 0.751 48 H 0.011 0.989 49 H 0.054 0.946 50 H 0.077 0.923 51 H 0.052 0.948 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.290 19.091 -11.263 25.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.155 4.155 4 C -0.139 4.139 5 C -0.155 4.155 6 C -0.082 4.082 7 C -0.119 4.119 8 C -0.136 4.136 9 C -0.029 4.029 10 H 0.051 0.949 11 C -0.193 4.193 12 N -0.308 5.308 13 C -0.002 4.002 14 C -0.189 4.189 15 C 0.056 3.944 16 N -0.334 5.334 17 C -0.392 4.392 18 H 0.084 0.916 19 C -0.248 4.248 20 N -0.582 5.582 21 Si 0.795 3.205 22 H -0.213 1.213 23 H -0.221 1.221 24 H -0.192 1.192 25 C 0.014 3.986 26 C -0.143 4.143 27 C -0.152 4.152 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.145 0.855 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.160 0.840 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.010 0.990 46 H 0.068 0.932 47 H 0.058 0.942 48 H 0.029 0.971 49 H 0.073 0.927 50 H 0.096 0.904 51 H 0.070 0.930 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.018 18.924 -11.788 25.818 hybrid contribution -0.095 -0.739 1.991 2.126 sum -13.113 18.185 -9.798 24.467 Atomic orbital electron populations 1.20832 0.89746 1.03538 1.02875 1.20240 0.97324 0.93066 0.98934 1.21308 0.94467 0.98180 1.01547 1.21410 0.94715 0.98487 0.99323 1.21259 1.00462 0.92302 1.01504 1.19958 0.93969 0.95155 0.99083 1.20635 0.99649 0.93887 0.97777 1.21616 1.00347 0.96057 0.95622 1.21578 0.88555 0.96606 0.96130 0.94854 1.21753 1.01612 1.00710 0.95185 1.60794 1.24394 1.07636 1.37982 1.21276 0.94943 0.91771 0.92243 1.22625 0.99125 0.99119 0.98048 1.20474 0.83045 0.92085 0.98835 1.44332 1.01884 1.82352 1.04833 1.19541 0.99070 1.24084 0.96460 0.91590 1.25811 0.99683 0.96209 1.03071 1.70199 1.28259 1.27800 1.31983 0.85258 0.78652 0.76464 0.80142 1.21321 1.22119 1.19156 1.21076 0.96541 0.94736 0.86210 1.21797 0.94661 0.97292 1.00563 1.21122 0.93686 0.98276 1.02111 0.90705 0.90422 0.91115 0.84449 0.84406 0.85531 0.91319 0.91530 0.90553 0.90938 0.93973 0.91433 0.91949 0.83956 0.92065 0.93102 0.92401 0.98961 0.93172 0.94154 0.97058 0.92707 0.90436 0.92955 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 71.24 0.71 -0.64 16 2 C -0.10 -1.64 5.88 -19.86 -0.12 -1.76 16 3 C -0.14 -2.23 9.70 22.27 0.22 -2.02 16 4 C -0.12 -2.07 10.05 22.27 0.22 -1.85 16 5 C -0.14 -2.65 9.70 22.27 0.22 -2.43 16 6 C -0.08 -1.65 5.13 -19.87 -0.10 -1.75 16 7 C -0.08 -1.64 5.17 29.85 0.15 -1.49 16 8 C -0.10 -1.88 4.79 30.59 0.15 -1.73 16 9 C 0.08 1.85 2.46 44.92 0.11 1.96 16 10 H 0.03 0.86 7.11 -2.38 -0.02 0.84 16 11 C -0.13 -2.87 9.40 71.98 0.68 -2.19 16 12 N -0.68 -17.77 6.06 -469.31 -2.84 -20.61 16 13 C 0.11 3.53 2.24 44.94 0.10 3.63 16 14 C -0.15 -5.62 5.31 30.67 0.16 -5.45 16 15 C 0.18 9.01 5.31 86.37 0.46 9.47 16 16 N -0.61 -31.45 2.99 -699.11 -2.09 -33.54 16 17 C -0.26 -14.70 9.58 84.03 0.81 -13.89 16 18 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 19 C -0.05 -3.00 4.90 84.86 0.42 -2.58 16 20 N -0.94 -56.51 11.22 21.65 0.24 -56.27 16 21 Si 0.97 45.62 29.59 68.60 2.03 47.65 16 22 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 23 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 C 0.14 5.98 6.51 86.36 0.56 6.54 16 26 C -0.10 -3.58 5.69 30.67 0.17 -3.41 16 27 C -0.13 -2.57 9.36 22.27 0.21 -2.36 16 28 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.08 0.72 8.08 -2.39 -0.02 0.70 16 30 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 31 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 32 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 33 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.07 1.44 6.37 -2.39 -0.02 1.43 16 35 H 0.07 1.40 8.09 -2.38 -0.02 1.38 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.04 1.01 7.43 -2.39 -0.02 0.99 16 39 H 0.07 1.20 8.14 -2.38 -0.02 1.19 16 40 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.34 8.67 6.22 -89.69 -0.56 8.11 16 42 H 0.06 2.13 7.11 -2.39 -0.02 2.12 16 43 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.06 2.01 7.41 -2.39 -0.02 1.99 16 45 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 46 H 0.05 2.82 6.06 -2.39 -0.01 2.80 16 47 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 48 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.05 2.29 7.94 -2.39 -0.02 2.27 16 50 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 51 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 52 H 0.12 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -64.12 402.13 2.77 -61.35 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.31 Total: 23.37 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 5.13 Total: -21.95 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -4.69 Total: -110.42 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -64.12 2.77 -61.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813667.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.017 kcal (2) G-P(sol) polarization free energy of solvation -64.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds