Wall clock time and date at job start Tue Mar 31 2020 12:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38239 * 119.99990 * 2 1 4 4 C 1.38229 * 119.99825 * 179.74486 * 3 2 1 5 5 C 1.50705 * 119.99749 * 180.27193 * 4 3 2 6 6 C 1.38233 * 120.00270 * 0.55812 * 4 3 2 7 7 C 1.50707 * 120.00101 * 179.72242 * 6 4 3 8 8 H 1.09000 * 109.46982 * 196.93447 * 7 6 4 9 9 C 1.53002 * 109.46812 * 76.93774 * 7 6 4 10 10 N 1.46889 * 109.47200 * 316.93465 * 7 6 4 11 11 C 1.46961 * 111.00088 * 303.80184 * 10 7 6 12 12 C 1.53051 * 109.36366 * 176.81124 * 11 10 7 13 13 N 1.46952 * 109.36576 * 58.40389 * 12 11 10 14 14 C 1.46897 * 111.00078 * 176.81247 * 13 12 11 15 15 C 1.50698 * 109.47744 * 57.89888 * 14 13 12 16 16 H 1.08005 * 119.99660 * 5.05086 * 15 14 13 17 17 C 1.37873 * 120.00735 * 185.05596 * 15 14 13 18 18 N 1.31504 * 120.00496 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99665 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47128 * 89.99996 * 19 17 15 21 21 H 1.48495 * 109.47147 * 210.00070 * 19 17 15 22 22 H 1.48499 * 109.47093 * 330.00209 * 19 17 15 23 23 C 1.46963 * 110.87891 * 300.67374 * 13 12 11 24 24 C 1.46955 * 111.00367 * 180.02562 * 10 7 6 25 25 C 1.38232 * 119.99993 * 359.69693 * 6 4 3 26 26 C 1.50700 * 120.00291 * 180.02562 * 25 6 4 27 27 C 1.38236 * 120.00080 * 0.02562 * 25 6 4 28 28 H 1.08998 * 109.46958 * 269.72442 * 1 2 3 29 29 H 1.08999 * 109.47098 * 29.72368 * 1 2 3 30 30 H 1.09005 * 109.47133 * 149.72776 * 1 2 3 31 31 H 1.08001 * 119.99562 * 0.02562 * 3 2 1 32 32 H 1.08991 * 109.47467 * 269.03159 * 5 4 3 33 33 H 1.09000 * 109.46894 * 29.03790 * 5 4 3 34 34 H 1.09005 * 109.46629 * 149.03729 * 5 4 3 35 35 H 1.09000 * 109.46685 * 294.41348 * 9 7 6 36 36 H 1.08993 * 109.47554 * 54.41835 * 9 7 6 37 37 H 1.09001 * 109.46541 * 174.42190 * 9 7 6 38 38 H 1.09000 * 109.48670 * 296.77787 * 11 10 7 39 39 H 1.08998 * 109.49018 * 56.84441 * 11 10 7 40 40 H 1.08997 * 109.48990 * 298.43064 * 12 11 10 41 41 H 1.09005 * 109.48770 * 178.36309 * 12 11 10 42 42 H 1.09003 * 109.46959 * 177.90067 * 14 13 12 43 43 H 1.09004 * 109.47204 * 297.89392 * 14 13 12 44 44 H 0.97001 * 120.00592 * 180.02562 * 18 17 15 45 45 H 1.09000 * 109.48949 * 299.35675 * 23 13 12 46 46 H 1.08998 * 109.49105 * 179.28797 * 23 13 12 47 47 H 1.09005 * 109.48276 * 303.15476 * 24 10 7 48 48 H 1.08998 * 109.48730 * 63.19410 * 24 10 7 49 49 H 1.08996 * 109.47217 * 270.01977 * 26 25 6 50 50 H 1.09005 * 109.47159 * 30.02188 * 26 25 6 51 51 H 1.09000 * 109.47334 * 150.02329 * 26 25 6 52 52 H 1.07994 * 120.00311 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0053 5 6 4.3339 2.5023 0.0115 6 6 4.2717 0.0001 -0.0010 7 6 5.7788 0.0001 -0.0015 8 1 6.1420 -0.9814 -0.3060 9 6 6.2892 0.3190 1.4052 10 7 6.2681 1.0167 -0.9422 11 6 5.7236 0.7937 -2.2888 12 6 6.1921 1.9161 -3.2179 13 7 7.6611 1.9449 -3.2451 14 6 8.1504 2.9615 -4.1857 15 6 7.6063 4.3113 -3.7946 16 1 7.0289 4.4188 -2.8882 17 6 7.8453 5.4091 -4.5938 18 7 7.3700 6.5868 -4.2527 19 14 8.8444 5.2234 -6.1613 20 1 7.9360 4.9082 -7.2929 21 1 9.5642 6.4914 -6.4426 22 1 9.8274 4.1228 -5.9942 23 6 8.2056 2.1679 -1.8984 24 6 7.7371 1.0452 -0.9698 25 6 3.5806 -1.1971 -0.0063 26 6 4.3341 -2.5022 -0.0126 27 6 2.1982 -1.1972 -0.0059 28 1 -0.3633 -0.0049 1.0276 29 1 -0.3633 0.8924 -0.5095 30 1 -0.3634 -0.8876 -0.5181 31 1 1.6581 2.1325 0.0004 32 1 4.5346 2.8109 -1.0143 33 1 3.7355 3.2649 0.5100 34 1 5.2768 2.3749 0.5436 35 1 6.0098 1.3386 1.6705 36 1 5.8468 -0.3763 2.1185 37 1 7.3746 0.2220 1.4284 38 1 6.0765 -0.1647 -2.6696 39 1 4.6345 0.7891 -2.2446 40 1 5.8163 2.8716 -2.8521 41 1 5.8133 1.7371 -4.2242 42 1 9.2398 2.9872 -4.1587 43 1 7.8178 2.7139 -5.1938 44 1 7.5379 7.3591 -4.8152 45 1 7.8527 3.1264 -1.5176 46 1 9.2947 2.1726 -1.9427 47 1 8.1162 1.2239 0.0365 48 1 8.1125 0.0894 -1.3354 49 1 4.5157 -2.8119 -1.0418 50 1 5.2865 -2.3743 0.5018 51 1 3.7450 -3.2643 0.4975 52 1 1.6583 -2.1324 -0.0104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611174243.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:46 Heat of formation + Delta-G solvation = 33.162891 kcal Electronic energy + Delta-G solvation = -28130.751057 eV Core-core repulsion = 24708.821145 eV Total energy + Delta-G solvation = -3421.929913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.42585 -38.47334 -35.98851 -33.69644 -33.24228 -32.25279 -30.89646 -30.12055 -27.87697 -27.63621 -26.73798 -26.52379 -24.77216 -22.82342 -21.95139 -21.06044 -20.64120 -19.62446 -19.05476 -16.86502 -16.47213 -16.11072 -15.16060 -14.56774 -14.39845 -14.30038 -14.24902 -14.08433 -13.97856 -13.75168 -13.35116 -13.24201 -12.86178 -12.78692 -12.73930 -12.47881 -12.38454 -12.28002 -12.17529 -11.90031 -11.73444 -11.63767 -11.32675 -11.15893 -11.01723 -10.89633 -10.80233 -10.65141 -10.52695 -10.34642 -10.15430 -9.98985 -9.83919 -9.44977 -8.57551 -8.43478 -8.26371 -7.91084 -7.15758 -6.08391 -4.07806 1.39173 1.49571 3.28457 3.36279 3.40203 3.73229 4.14944 4.41170 4.69503 4.76229 4.93718 4.97341 4.99727 5.19603 5.25118 5.25254 5.29621 5.35104 5.42264 5.47261 5.51630 5.56354 5.65232 5.67264 5.72048 5.76324 5.80062 5.85323 5.87730 5.91504 5.99084 6.01394 6.11036 6.17962 6.20867 6.25034 6.34248 6.36485 6.58301 6.60663 6.64458 6.73141 6.80645 6.91328 6.92653 6.97521 7.08250 7.16360 7.40447 7.43135 7.58707 8.08652 8.13432 8.47236 8.95560 9.54790 11.04433 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017520 B = 0.003607 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.816298 B = 7760.870403 C = 8441.357805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.084 4.084 3 C -0.134 4.134 4 C -0.041 4.041 5 C -0.109 4.109 6 C -0.085 4.085 7 C 0.119 3.881 8 H 0.048 0.952 9 C -0.145 4.145 10 N -0.522 5.522 11 C 0.060 3.940 12 C 0.065 3.935 13 N -0.537 5.537 14 C 0.155 3.845 15 C -0.549 4.549 16 H 0.078 0.922 17 C 0.073 3.927 18 N -0.899 5.899 19 Si 0.877 3.123 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.265 1.265 23 C 0.063 3.937 24 C 0.057 3.943 25 C -0.077 4.077 26 C -0.116 4.116 27 C -0.134 4.134 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.026 0.974 43 H 0.024 0.976 44 H 0.263 0.737 45 H 0.053 0.947 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.032 0.968 49 H 0.068 0.932 50 H 0.067 0.933 51 H 0.063 0.937 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.460 -16.343 11.142 21.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 C -0.152 4.152 4 C -0.041 4.041 5 C -0.165 4.165 6 C -0.085 4.085 7 C 0.011 3.989 8 H 0.066 0.934 9 C -0.203 4.203 10 N -0.247 5.247 11 C -0.068 4.068 12 C -0.064 4.064 13 N -0.261 5.261 14 C 0.028 3.972 15 C -0.587 4.587 16 H 0.095 0.905 17 C -0.130 4.130 18 N -0.537 5.537 19 Si 0.705 3.295 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.190 1.190 23 C -0.065 4.065 24 C -0.071 4.071 25 C -0.077 4.077 26 C -0.172 4.172 27 C -0.153 4.153 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.044 0.956 43 H 0.042 0.958 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.091 0.909 48 H 0.050 0.950 49 H 0.086 0.914 50 H 0.086 0.914 51 H 0.082 0.918 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.444 -16.159 11.079 21.335 hybrid contribution 0.379 0.115 -0.995 1.071 sum -8.065 -16.045 10.083 20.595 Atomic orbital electron populations 1.20761 0.91608 1.02539 1.01962 1.19829 0.95692 0.93190 0.99675 1.20947 0.93775 0.97341 1.03123 1.19841 0.92980 0.95565 0.95709 1.21011 0.99833 0.91840 1.03842 1.19449 0.94557 0.92159 1.02384 1.20522 0.90637 0.93996 0.93745 0.93393 1.21947 1.00689 1.02788 0.94850 1.62441 1.08168 1.46282 1.07797 1.22216 0.99037 0.97725 0.87785 1.21950 0.89300 0.97378 0.97748 1.62615 1.07269 1.48664 1.07542 1.20138 0.95657 0.89506 0.91890 1.21700 1.34807 0.91958 1.10267 0.90451 1.24958 0.95154 0.95167 0.97719 1.69923 1.45539 0.99626 1.38602 0.86821 0.80984 0.77670 0.84050 1.20271 1.21381 1.18961 1.21943 0.98594 0.96879 0.89119 1.22264 0.87017 0.98450 0.99401 1.19667 0.93608 0.94579 0.99884 1.20822 1.00006 0.94165 1.02224 1.20716 0.93248 0.97225 1.04063 0.91499 0.91635 0.91866 0.86375 0.90034 0.93732 0.89508 0.91030 0.92538 0.92264 0.95258 0.90996 0.92547 0.91696 0.95634 0.95832 0.92750 0.92899 0.91594 0.90877 0.95003 0.91368 0.91383 0.91828 0.86687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.01 36.01 0.36 -0.63 16 2 C -0.08 -0.97 5.88 -104.62 -0.62 -1.58 16 3 C -0.13 -1.71 9.35 -39.58 -0.37 -2.08 16 4 C -0.04 -0.56 4.85 -104.62 -0.51 -1.06 16 5 C -0.11 -1.58 8.22 36.01 0.30 -1.28 16 6 C -0.09 -1.10 3.63 -104.62 -0.38 -1.48 16 7 C 0.12 1.50 1.56 -68.87 -0.11 1.40 16 8 H 0.05 0.60 6.01 -51.93 -0.31 0.29 16 9 C -0.15 -1.62 8.58 37.16 0.32 -1.30 16 10 N -0.52 -7.71 1.92 -227.88 -0.44 -8.14 16 11 C 0.06 0.98 4.40 -3.76 -0.02 0.97 16 12 C 0.06 1.28 5.22 -3.77 -0.02 1.26 16 13 N -0.54 -11.16 4.92 -235.91 -1.16 -12.32 16 14 C 0.15 3.72 4.22 -4.98 -0.02 3.70 16 15 C -0.55 -15.13 8.21 -34.44 -0.28 -15.41 16 16 H 0.08 2.32 6.07 -52.48 -0.32 2.00 16 17 C 0.07 2.07 5.47 -17.83 -0.10 1.97 16 18 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 19 Si 0.88 21.44 27.37 -169.99 -4.65 16.79 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.27 -6.25 6.69 56.52 0.38 -5.88 16 23 C 0.06 1.20 5.33 -3.76 -0.02 1.18 16 24 C 0.06 0.86 5.31 -3.77 -0.02 0.84 16 25 C -0.08 -0.91 5.88 -104.62 -0.62 -1.53 16 26 C -0.12 -1.10 9.22 36.01 0.33 -0.77 16 27 C -0.13 -1.53 9.36 -39.58 -0.37 -1.90 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 31 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 32 H 0.08 1.37 6.61 -51.93 -0.34 1.03 16 33 H 0.04 0.60 8.08 -51.93 -0.42 0.18 16 34 H 0.09 1.26 4.24 -51.93 -0.22 1.04 16 35 H 0.07 0.85 5.96 -51.93 -0.31 0.54 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.61 6.65 -51.93 -0.35 0.27 16 38 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 1.17 6.13 -51.93 -0.32 0.85 16 40 H 0.06 1.26 5.96 -51.93 -0.31 0.95 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.03 0.62 7.51 -51.93 -0.39 0.23 16 43 H 0.02 0.57 7.29 -51.93 -0.38 0.20 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.05 1.14 6.85 -51.93 -0.36 0.78 16 46 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 47 H 0.07 0.98 6.27 -51.93 -0.33 0.65 16 48 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.07 0.63 6.43 -51.93 -0.33 0.29 16 51 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 52 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 379.45 15.07 5.72 5.72 Total: -1.00 -29.51 379.45 -10.80 -40.31 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -8.90 Total: 1.86 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -2.14 Total: -17.73 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -0.82 Total: -46.94 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.65 Total: 16.79 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.51 -10.80 -40.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174243.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.470 kcal (2) G-P(sol) polarization free energy of solvation -29.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds